1MUHA

Crystal structure of tn5 transposase complexed with transposon end dna
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
473
structure length
455
Chain Sequence
ALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQLRESFTPQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords DNA TRANSFERRED STRAND
publication title Three-dimensional structure of the Tn5 synaptic complex transposition intermediate.
pubmed doi rcsb
source organism Escherichia coli
total genus 159
structure length 455
sequence length 473
ec nomenclature
pdb deposition date 2002-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 1muhA01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 1muhA03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 1muhA02
1MM8A 1B7EA 3ECPA 1MUHA 1MUSA 4DM0A
chains in the Genus database with same CATH superfamily
4ZBQA 2XVUA 1E7EA 2BXOA 3H3AA 4ZUXV 2KBZA 4ZBKA 2XVQA 1LNSA 3JQZA 2GUTA 2BX8A 4DHXB 2VUEA 1E7GA 3VQIA 2QHBA 2DYOA 2OT3A 1BJ5A 2BXCA 3H37A 4WA6B 2BXKA 5GIPA 2DBXA 4TQ1A 4F5VA 1HK1A 1NT2B 3GQXA 4LB9A 4ZBRA 1H9ZA 3CX9A 2EFEA 4L9KA 1AO6A 2QM6A 1KXPD 1E7FA 2BXGA 2LQIA 3JRYA 4GDKB 4N0UD 2DYMA 1LOTA 1TXUA 2JUHA 3KJLA 4ZC6A 5IJFA 5GIOA 2EFCA 1HK2A 1BKEA 4GDLB 2EFDA 1B7EA 4HGKA 2LXSA 3SIVB 3SIUB 3A73A 2I2ZA 3MHSB 1MA9A 1E7BA 5FUOA 2DG5A 4DM0A 4D7XA 2BXLA 3V09A 4GG2A 2ROHA 2AJEA 4FJCB 4J2VA 4M70B 4OTTA 3PLAA 4TQ0A 3ICXA 4LUFA 4C31B 1MM8A 1TF0A 2BXNA 3MHHB 2DBUA 2XVWA 3A75A 2Z8IA 2LOQA 4GDXA 4BKEA 5HOZA 1MUHA 1E7HA 1SB0A 2XMOA 4Z69A 5GHKA 5D7GA 3LU8A 3TDLA 1E7AA 3NVKA 4F5SA 1H5WA 4LB2A 2EFHA 2XVVA 4IW1A 5IFOA 1O9XA 2VUFA 3GA9L 2BXIA 4FK5B 2YDFA 4OTUA 4F5TA 2AGHB 2BXPA 4NAWB 4LA0A 2XW0A 1JNBA 3BPJA 1MUSA 2I30A 1IJGA 1MIWA 2DBWA 3G9KD 4N3ZA 4S1YA 5ID7A 4IW2A 2K0NA 4EMXA 3GQUA 3WHSA 2BXHA 4JK4A 1J78A 2KWFA 4G03A 2BXBA 4K71A 4L9QA 1GNIA 1VFIA 3M99C 4BY9C 4G04A 2BXFA 3NMUA 3FWBC 1N5UA 3B9LA 4K2CA 2E0XA 4F5UA 1E78A 4OR0A 2V36A 1GNJA 2NQOA 4G01A 4FIPB 2BXDA 4MBEC 3UIVA 3V08A 3WHRA 3NVIA 1HK5A 1E7IA 2XW1A 3FWCC 5DBYA 2E0YA 2Z8KA 2NNWA 3NVMA 4E99A 1KDXA 3B9MA 4W4UB 5GINA 4I9OA 4OT2A 3ECPA 1HK3A 5IJEA 2LXTA 2BXQA 5IIXA 3KIKA 1E7CA 4Z9OA 1VZSA 3W1SA 4L8UA 5DQFA 1UORA 2Z8JA 4N0FD 5ID9A 3LU6A 1KW2A 2BXAA 3LU7A 3V03A 5IJ5A 1MIVA 1FOUA 1HK4A 2QMCA 2XSIA 5IIUA 3FNMA 4HGMB 4PO0A 2LQHA 2BXMA 2BXEA 1HA2A 1BM0A 2CKXA 4LUHA 3SQJA 5B5TA 3WHQA 1MIYA 5BPKA 5IIHA 2OZBB 4ZCGA 2VDBA 1J7EA
chains in the Genus database with same CATH topology
1MM8A 1B7EA 3ECPA 1MUHA 1MUSA 4DM0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MM8 A;  1B7E A;  3ECP A;  1MUH A;  1MUS A;  4DM0 A; 
#chains in the Genus database with same CATH topology
 4ZBQ A;  2XVU A;  1E7E A;  2BXO A;  3H3A A;  4ZUX V;  2KBZ A;  4ZBK A;  2XVQ A;  1LNS A;  3JQZ A;  2GUT A;  2BX8 A;  4DHX B;  2VUE A;  1E7G A;  3VQI A;  2QHB A;  2DYO A;  2OT3 A;  1BJ5 A;  2BXC A;  3H37 A;  4WA6 B;  2BXK A;  5GIP A;  2DBX A;  4TQ1 A;  4F5V A;  1HK1 A;  1NT2 B;  3GQX A;  4LB9 A;  4ZBR A;  1H9Z A;  3CX9 A;  2EFE A;  4L9K A;  1AO6 A;  2QM6 A;  1KXP D;  1E7F A;  2BXG A;  2LQI A;  3JRY A;  4GDK B;  4N0U D;  2DYM A;  1LOT A;  1TXU A;  2JUH A;  3KJL A;  4ZC6 A;  5IJF A;  5GIO A;  2EFC A;  1HK2 A;  1BKE A;  4GDL B;  2EFD A;  1B7E A;  4HGK A;  2LXS A;  3SIV B;  3SIU B;  3A73 A;  2I2Z A;  3MHS B;  1MA9 A;  1E7B A;  5FUO A;  2DG5 A;  4DM0 A;  4D7X A;  2BXL A;  3V09 A;  4GG2 A;  2ROH A;  2AJE A;  4FJC B;  4J2V A;  4M70 B;  4OTT A;  3PLA A;  4TQ0 A;  3ICX A;  4LUF A;  4C31 B;  1MM8 A;  1TF0 A;  2BXN A;  3MHH B;  2DBU A;  2XVW A;  3A75 A;  2Z8I A;  2LOQ A;  4GDX A;  4BKE A;  5HOZ A;  1MUH A;  1E7H A;  1SB0 A;  2XMO A;  4Z69 A;  5GHK A;  5D7G A;  3LU8 A;  3TDL A;  1E7A A;  3NVK A;  4F5S A;  1H5W A;  4LB2 A;  2EFH A;  2XVV A;  4IW1 A;  5IFO A;  1O9X A;  2VUF A;  3GA9 L;  2BXI A;  4FK5 B;  2YDF A;  4OTU A;  4F5T A;  2AGH B;  2BXP A;  4NAW B;  4LA0 A;  2XW0 A;  1JNB A;  3BPJ A;  1MUS A;  2I30 A;  1IJG A;  1MIW A;  2DBW A;  3G9K D;  4N3Z A;  4S1Y A;  5ID7 A;  4IW2 A;  2K0N A;  4EMX A;  3GQU A;  3WHS A;  2BXH A;  4JK4 A;  1J78 A;  2KWF A;  4G03 A;  2BXB A;  4K71 A;  4L9Q A;  1GNI A;  1VFI A;  3M99 C;  4BY9 C;  4G04 A;  2BXF A;  3NMU A;  3FWB C;  1N5U A;  3B9L A;  4K2C A;  2E0X A;  4F5U A;  1E78 A;  4OR0 A;  2V36 A;  1GNJ A;  2NQO A;  4G01 A;  4FIP B;  2BXD A;  4MBE C;  3UIV A;  3V08 A;  3WHR A;  3NVI A;  1HK5 A;  1E7I A;  2XW1 A;  3FWC C;  5DBY A;  2E0Y A;  2Z8K A;  2NNW A;  3NVM A;  4E99 A;  1KDX A;  3B9M A;  4W4U B;  5GIN A;  4I9O A;  4OT2 A;  3ECP A;  1HK3 A;  5IJE A;  2LXT A;  2BXQ A;  5IIX A;  3KIK A;  1E7C A;  4Z9O A;  1VZS A;  3W1S A;  4L8U A;  5DQF A;  1UOR A;  2Z8J A;  4N0F D;  5ID9 A;  3LU6 A;  1KW2 A;  2BXA A;  3LU7 A;  3V03 A;  5IJ5 A;  1MIV A;  1FOU A;  1HK4 A;  2QMC A;  2XSI A;  5IIU A;  3FNM A;  4HGM B;  4PO0 A;  2LQH A;  2BXM A;  2BXE A;  1HA2 A;  1BM0 A;  2CKX A;  4LUH A;  3SQJ A;  5B5T A;  3WHQ A;  1MIY A;  5BPK A;  5IIH A;  2OZB B;  4ZCG A;  2VDB A;  1J7E A; 
#chains in the Genus database with same CATH homology
 1MM8 A;  1B7E A;  3ECP A;  1MUH A;  1MUS A;  4DM0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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