1MUHA

Crystal structure of tn5 transposase complexed with transposon end dna
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
473
structure length
455
Chain Sequence
ALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQLRESFTPQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords DNA TRANSFERRED STRAND
publication title Three-dimensional structure of the Tn5 synaptic complex transposition intermediate.
pubmed doi rcsb
source organism Escherichia coli
total genus 159
structure length 455
sequence length 473
ec nomenclature
pdb deposition date 2002-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 1muhA01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 1muhA03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 1muhA02
1B7EA 1MM8A 4DM0A 3ECPA 1MUHA 1MUSA
chains in the Genus database with same CATH superfamily
4GDLB 4F5VA 1HK4A 4JK4A 4M70B 2DBUA 2VDBA 2BXKA 4N0UD 1J78A 1MIVA 3NVKA 1MM8A 3KJLA 2BXCA 3V08A 3KIKA 1VFIA 4TQ0A 5ID9A 3UIVA 2AGHB 4TQ1A 4ZBRA 2BXHA 2NQOA 3GQXA 3SIVB 2XSIA 4G04A 1B7EA 2LXTA 4MBEC 2LQIA 4BY9C 4L8UA 1AO6A 2VUFA 1HK1A 4D7XA 3NVIA 2XMOA 2V36A 5GIPA 2BXPA 4GDKB 2LXSA 2E0YA 4F5TA 5GINA 1H9ZA 3H37A 2XVWA 4GG2A 2QHBA 1HA2A 3G9KD 1MUHA 1H5WA 4F5UA 2XVVA 4L9KA 1MIWA 1GNIA 1GNJA 3FWCC 4ZUXV 4N3ZA 2E0XA 4GDXA 2DYMA 5IFOA 5IIUA 4OR0A 2EFHA 2BXGA 5IIXA 2XVQA 3FWBC 5B5TA 4NAWB 4W4UB 1E7CA 2KWFA 2BXOA 3CX9A 3LU7A 3B9LA 4S1YA 2BXNA 3MHHB 1HK5A 1E7GA 3GA9L 1KW2A 4HGKA 4DHXB 4DM0A 4LUHA 3WHQA 2OT3A 2DYOA 1UORA 2VUEA 5IJEA 4I9OA 5D7GA 4LA0A 1E7IA 3JQZA 4LUFA 5FUOA 5GIOA 1KXPD 1MIYA 1O9XA 4IW1A 3ECPA 2KBZA 2JUHA 2BXMA 2BXAA 4OTUA 4ZC6A 3W1SA 4Z69A 4LB9A 1FOUA 5DBYA 2EFEA 2GUTA 4C31B 2ROHA 1E7EA 5DQFA 4ZBKA 1BKEA 2EFCA 2BXFA 3B9MA 2I2ZA 2CKXA 1TXUA 3ICXA 1E7FA 2I30A 4LB2A 2DBXA 3M99C 2BXEA 3SIUB 1MA9A 4IW2A 4ZBQA 2BX8A 2NNWA 4Z9OA 3SQJA 4E99A 3FNMA 3LU6A 1HK2A 2K0NA 4N0FD 1NT2B 4ZCGA 1LOTA 2BXDA 2Z8JA 2LQHA 4L9QA 1N5UA 4FIPB 2AJEA 3TDLA 3A75A 3PLAA 2EFDA 4PO0A 3NMUA 2Z8IA 3H3AA 1E7BA 4K2CA 3WHRA 3GQUA 4G03A 3V03A 1SB0A 5BPKA 4BKEA 2LOQA 2XW0A 3BPJA 3VQIA 3LU8A 1LNSA 1BM0A 1HK3A 3A73A 4FK5B 3MHSB 4EMXA 5IIHA 2OZBB 1E78A 4HGMB 2BXIA 2XW1A 2YDFA 3JRYA 2BXQA 1E7AA 3NVMA 2QM6A 4FJCB 4G01A 1VZSA 4OT2A 2BXLA 4K71A 2DBWA 5HOZA 1TF0A 4WA6B 5ID7A 2QMCA 5IJ5A 1JNBA 3V09A 1IJGA 2DG5A 5IJFA 4J2VA 4F5SA 1J7EA 2Z8KA 2XVUA 1BJ5A 2BXBA 3WHSA 5GHKA 1E7HA 4OTTA 1KDXA 1MUSA
chains in the Genus database with same CATH topology
1B7EA 1MM8A 4DM0A 3ECPA 1MUHA 1MUSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B7E A;  1MM8 A;  4DM0 A;  3ECP A;  1MUH A;  1MUS A; 
#chains in the Genus database with same CATH topology
 4GDL B;  4F5V A;  1HK4 A;  4JK4 A;  4M70 B;  2DBU A;  2VDB A;  2BXK A;  4N0U D;  1J78 A;  1MIV A;  3NVK A;  1MM8 A;  3KJL A;  2BXC A;  3V08 A;  3KIK A;  1VFI A;  4TQ0 A;  5ID9 A;  3UIV A;  2AGH B;  4TQ1 A;  4ZBR A;  2BXH A;  2NQO A;  3GQX A;  3SIV B;  2XSI A;  4G04 A;  1B7E A;  2LXT A;  4MBE C;  2LQI A;  4BY9 C;  4L8U A;  1AO6 A;  2VUF A;  1HK1 A;  4D7X A;  3NVI A;  2XMO A;  2V36 A;  5GIP A;  2BXP A;  4GDK B;  2LXS A;  2E0Y A;  4F5T A;  5GIN A;  1H9Z A;  3H37 A;  2XVW A;  4GG2 A;  2QHB A;  1HA2 A;  3G9K D;  1MUH A;  1H5W A;  4F5U A;  2XVV A;  4L9K A;  1MIW A;  1GNI A;  1GNJ A;  3FWC C;  4ZUX V;  4N3Z A;  2E0X A;  4GDX A;  2DYM A;  5IFO A;  5IIU A;  4OR0 A;  2EFH A;  2BXG A;  5IIX A;  2XVQ A;  3FWB C;  5B5T A;  4NAW B;  4W4U B;  1E7C A;  2KWF A;  2BXO A;  3CX9 A;  3LU7 A;  3B9L A;  4S1Y A;  2BXN A;  3MHH B;  1HK5 A;  1E7G A;  3GA9 L;  1KW2 A;  4HGK A;  4DHX B;  4DM0 A;  4LUH A;  3WHQ A;  2OT3 A;  2DYO A;  1UOR A;  2VUE A;  5IJE A;  4I9O A;  5D7G A;  4LA0 A;  1E7I A;  3JQZ A;  4LUF A;  5FUO A;  5GIO A;  1KXP D;  1MIY A;  1O9X A;  4IW1 A;  3ECP A;  2KBZ A;  2JUH A;  2BXM A;  2BXA A;  4OTU A;  4ZC6 A;  3W1S A;  4Z69 A;  4LB9 A;  1FOU A;  5DBY A;  2EFE A;  2GUT A;  4C31 B;  2ROH A;  1E7E A;  5DQF A;  4ZBK A;  1BKE A;  2EFC A;  2BXF A;  3B9M A;  2I2Z A;  2CKX A;  1TXU A;  3ICX A;  1E7F A;  2I30 A;  4LB2 A;  2DBX A;  3M99 C;  2BXE A;  3SIU B;  1MA9 A;  4IW2 A;  4ZBQ A;  2BX8 A;  2NNW A;  4Z9O A;  3SQJ A;  4E99 A;  3FNM A;  3LU6 A;  1HK2 A;  2K0N A;  4N0F D;  1NT2 B;  4ZCG A;  1LOT A;  2BXD A;  2Z8J A;  2LQH A;  4L9Q A;  1N5U A;  4FIP B;  2AJE A;  3TDL A;  3A75 A;  3PLA A;  2EFD A;  4PO0 A;  3NMU A;  2Z8I A;  3H3A A;  1E7B A;  4K2C A;  3WHR A;  3GQU A;  4G03 A;  3V03 A;  1SB0 A;  5BPK A;  4BKE A;  2LOQ A;  2XW0 A;  3BPJ A;  3VQI A;  3LU8 A;  1LNS A;  1BM0 A;  1HK3 A;  3A73 A;  4FK5 B;  3MHS B;  4EMX A;  5IIH A;  2OZB B;  1E78 A;  4HGM B;  2BXI A;  2XW1 A;  2YDF A;  3JRY A;  2BXQ A;  1E7A A;  3NVM A;  2QM6 A;  4FJC B;  4G01 A;  1VZS A;  4OT2 A;  2BXL A;  4K71 A;  2DBW A;  5HOZ A;  1TF0 A;  4WA6 B;  5ID7 A;  2QMC A;  5IJ5 A;  1JNB A;  3V09 A;  1IJG A;  2DG5 A;  5IJF A;  4J2V A;  4F5S A;  1J7E A;  2Z8K A;  2XVU A;  1BJ5 A;  2BXB A;  3WHS A;  5GHK A;  1E7H A;  4OTT A;  1KDX A;  1MUS A; 
#chains in the Genus database with same CATH homology
 1B7E A;  1MM8 A;  4DM0 A;  3ECP A;  1MUH A;  1MUS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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