1MUSA

Crystal structure of tn5 transposase complexed with resolved outside end dna
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
474
structure length
458
Chain Sequence
SALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQKASRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPPSQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords DNA transferred strand
publication title Structure/function insights into Tn5 transposition.
pubmed doi rcsb
source organism Escherichia coli
total genus 157
structure length 458
sequence length 474
ec nomenclature
pdb deposition date 2002-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 1musA01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 1musA03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 1musA02
1MUHA 1B7EA 1MUSA 1MM8A 4DM0A 3ECPA
chains in the Genus database with same CATH superfamily
3CX9A 3MHHB 1E78A 5D7GA 1E7HA 2EFDA 4OT2A 2ROHA 5DBYA 1HK5A 2E0XA 4G03A 2BXDA 2OT3A 3ECPA 2LQHA 3SIVB 5IJFA 2Z8IA 4F5TA 5GHKA 4E99A 1LOTA 2BXKA 4OTUA 1E7IA 2XW0A 4K2CA 4EMXA 1MIVA 1HK1A 2BXCA 3V09A 4TQ1A 4J2VA 2LXTA 2KBZA 4OR0A 2QHBA 4JK4A 2BX8A 2XVUA 3NMUA 4ZBRA 3SIUB 1NT2B 1SB0A 1HK3A 1HA2A 3FWBC 3FNMA 3H3AA 4D7XA 5IIUA 3KJLA 5BPKA 1BKEA 2BXFA 2DBXA 5IJ5A 4F5SA 3NVKA 4IW1A 3G9KD 2EFEA 1KW2A 1E7EA 3ICXA 2QMCA 4L9QA 4BY9C 3A73A 2DYOA 4S1YA 1HK2A 4WA6B 4BKEA 1E7AA 2BXPA 2AGHB 2VUEA 2XSIA 4HGKA 2CKXA 4L8UA 4PO0A 3V03A 2LXSA 1FOUA 2Z8JA 2YDFA 4GDLB 3LU7A 3WHRA 3WHQA 5GINA 5GIPA 1GNJA 4FJCB 1IJGA 3M99C 2XVQA 1B7EA 1J7EA 3GQXA 5ID9A 4TQ0A 4DM0A 2BXHA 3NVMA 2BXGA 4HGMB 1MUHA 3B9MA 2Z8KA 5B5TA 3SQJA 2VUFA 5DQFA 1GNIA 2I2ZA 4G01A 4K71A 2DYMA 4GG2A 1E7CA 2GUTA 3A75A 2EFHA 2BXNA 2K0NA 3LU6A 2DG5A 5IIHA 1E7BA 2DBUA 4FIPB 4F5UA 1H9ZA 2DBWA 1MIWA 3MHSB 1J78A 1O9XA 2BXBA 2V36A 1E7FA 3GQUA 3GA9L 1KDXA 1TXUA 1MIYA 2I30A 2KWFA 2XMOA 3WHSA 3FWCC 5ID7A 2VDBA 2BXLA 2BXIA 4ZBQA 4MBEC 3W1SA 2XW1A 4ZBKA 5IFOA 4ZC6A 1UORA 2BXAA 1BM0A 1MA9A 4Z69A 2LOQA 1N5UA 4LB2A 2OZBB 1MUSA 2XVWA 2BXEA 3JQZA 4L9KA 1MM8A 1VZSA 2NNWA 3LU8A 4N3ZA 5GIOA 1TF0A 3B9LA 4FK5B 1BJ5A 4N0FD 4ZCGA 4LUFA 4I9OA 3KIKA 3VQIA 5FUOA 4LB9A 3PLAA 4IW2A 4ZUXV 3UIVA 3JRYA 2E0YA 1KXPD 4LUHA 4DHXB 5HOZA 2LQIA 4N0UD 3BPJA 4M70B 3NVIA 4Z9OA 3TDLA 4C31B 2BXMA 4OTTA 1JNBA 1HK4A 2BXOA 1VFIA 2JUHA 3H37A 2EFCA 4GDKB 4GDXA 4NAWB 5IJEA 1LNSA 3V08A 4G04A 1E7GA 4W4UB 1H5WA 2AJEA 2XVVA 2NQOA 2QM6A 5IIXA 1AO6A 2BXQA 4F5VA 4LA0A
chains in the Genus database with same CATH topology
1MUHA 1B7EA 1MUSA 1MM8A 4DM0A 3ECPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MUH A;  1B7E A;  1MUS A;  1MM8 A;  4DM0 A;  3ECP A; 
#chains in the Genus database with same CATH topology
 3CX9 A;  3MHH B;  1E78 A;  5D7G A;  1E7H A;  2EFD A;  4OT2 A;  2ROH A;  5DBY A;  1HK5 A;  2E0X A;  4G03 A;  2BXD A;  2OT3 A;  3ECP A;  2LQH A;  3SIV B;  5IJF A;  2Z8I A;  4F5T A;  5GHK A;  4E99 A;  1LOT A;  2BXK A;  4OTU A;  1E7I A;  2XW0 A;  4K2C A;  4EMX A;  1MIV A;  1HK1 A;  2BXC A;  3V09 A;  4TQ1 A;  4J2V A;  2LXT A;  2KBZ A;  4OR0 A;  2QHB A;  4JK4 A;  2BX8 A;  2XVU A;  3NMU A;  4ZBR A;  3SIU B;  1NT2 B;  1SB0 A;  1HK3 A;  1HA2 A;  3FWB C;  3FNM A;  3H3A A;  4D7X A;  5IIU A;  3KJL A;  5BPK A;  1BKE A;  2BXF A;  2DBX A;  5IJ5 A;  4F5S A;  3NVK A;  4IW1 A;  3G9K D;  2EFE A;  1KW2 A;  1E7E A;  3ICX A;  2QMC A;  4L9Q A;  4BY9 C;  3A73 A;  2DYO A;  4S1Y A;  1HK2 A;  4WA6 B;  4BKE A;  1E7A A;  2BXP A;  2AGH B;  2VUE A;  2XSI A;  4HGK A;  2CKX A;  4L8U A;  4PO0 A;  3V03 A;  2LXS A;  1FOU A;  2Z8J A;  2YDF A;  4GDL B;  3LU7 A;  3WHR A;  3WHQ A;  5GIN A;  5GIP A;  1GNJ A;  4FJC B;  1IJG A;  3M99 C;  2XVQ A;  1B7E A;  1J7E A;  3GQX A;  5ID9 A;  4TQ0 A;  4DM0 A;  2BXH A;  3NVM A;  2BXG A;  4HGM B;  1MUH A;  3B9M A;  2Z8K A;  5B5T A;  3SQJ A;  2VUF A;  5DQF A;  1GNI A;  2I2Z A;  4G01 A;  4K71 A;  2DYM A;  4GG2 A;  1E7C A;  2GUT A;  3A75 A;  2EFH A;  2BXN A;  2K0N A;  3LU6 A;  2DG5 A;  5IIH A;  1E7B A;  2DBU A;  4FIP B;  4F5U A;  1H9Z A;  2DBW A;  1MIW A;  3MHS B;  1J78 A;  1O9X A;  2BXB A;  2V36 A;  1E7F A;  3GQU A;  3GA9 L;  1KDX A;  1TXU A;  1MIY A;  2I30 A;  2KWF A;  2XMO A;  3WHS A;  3FWC C;  5ID7 A;  2VDB A;  2BXL A;  2BXI A;  4ZBQ A;  4MBE C;  3W1S A;  2XW1 A;  4ZBK A;  5IFO A;  4ZC6 A;  1UOR A;  2BXA A;  1BM0 A;  1MA9 A;  4Z69 A;  2LOQ A;  1N5U A;  4LB2 A;  2OZB B;  1MUS A;  2XVW A;  2BXE A;  3JQZ A;  4L9K A;  1MM8 A;  1VZS A;  2NNW A;  3LU8 A;  4N3Z A;  5GIO A;  1TF0 A;  3B9L A;  4FK5 B;  1BJ5 A;  4N0F D;  4ZCG A;  4LUF A;  4I9O A;  3KIK A;  3VQI A;  5FUO A;  4LB9 A;  3PLA A;  4IW2 A;  4ZUX V;  3UIV A;  3JRY A;  2E0Y A;  1KXP D;  4LUH A;  4DHX B;  5HOZ A;  2LQI A;  4N0U D;  3BPJ A;  4M70 B;  3NVI A;  4Z9O A;  3TDL A;  4C31 B;  2BXM A;  4OTT A;  1JNB A;  1HK4 A;  2BXO A;  1VFI A;  2JUH A;  3H37 A;  2EFC A;  4GDK B;  4GDX A;  4NAW B;  5IJE A;  1LNS A;  3V08 A;  4G04 A;  1E7G A;  4W4U B;  1H5W A;  2AJE A;  2XVV A;  2NQO A;  2QM6 A;  5IIX A;  1AO6 A;  2BXQ A;  4F5V A;  4LA0 A; 
#chains in the Genus database with same CATH homology
 1MUH A;  1B7E A;  1MUS A;  1MM8 A;  4DM0 A;  3ECP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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