The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
156
|
sequence length |
475
|
structure length |
458
|
Chain Sequence |
TSALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQLRESFTPSQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Phosphate coordination and movement of DNA in the Tn5 synaptic complex: role of the (R)YREK motif
pubmed doi rcsb |
| molecule tags |
Dna recombination/dna
|
| source organism |
Escherichia coli
|
| molecule keywords |
Tn5 transposase
|
| total genus |
156
|
| structure length |
458
|
| sequence length |
475
|
| ec nomenclature | |
| pdb deposition date | 2008-09-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01609 | DDE_Tnp_1 | Transposase DDE domain |
| A | PF02281 | Dimer_Tnp_Tn5 | Transposase Tn5 dimerisation domain |
| A | PF14706 | Tnp_DNA_bind | Transposase DNA-binding |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Tn5 transposase; domain 1 | ||
| Mainly Alpha | Orthogonal Bundle | Transferase Inhibitor Protein From Tn5; Chain A, domain2 | Transferase Inhibitor Protein From Tn5; Chain | ||
| Alpha Beta | Alpha-Beta Complex | Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | Transposase Inhibitor Protein From Tn5; Chain A, domain 1 |
#chains in the Genus database with same CATH superfamily 3ECP A; 1MUS A; 4DM0 A; 1B7E A; 1MUH A; 1MM8 A; #chains in the Genus database with same CATH topology 2EFH A; 4DM0 A; 2XSI A; 1E7F A; 2JUH A; 3V03 A; 1H5W A; 2AJE A; 2V36 A; 4F5S A; 2OZB B; 2DBW A; 2DBU A; 1MUS A; 2BXE A; 2VDB A; 4LUF A; 3NMU A; 4EMX A; 4K2C A; 2LQH A; 2BXH A; 4TQ1 A; 5IJE A; 2BXK A; 1GNJ A; 4Z9O A; 1E7E A; 4G03 A; 1E7A A; 5B5T A; 1HK2 A; 2OT3 A; 1J78 A; 3FWC C; 5IFO A; 4C31 B; 5BPK A; 5GIN A; 2E0Y A; 2VUE A; 2DG5 A; 4BY9 C; 3UIV A; 5ID7 A; 2BXP A; 2LXT A; 4OTT A; 3NVK A; 4LB9 A; 3ECP A; 3H37 A; 2BXQ A; 4GG2 A; 2GUT A; 5IIH A; 1O9X A; 2XMO A; 3SIU B; 5DQF A; 1HK1 A; 3LU7 A; 2EFE A; 4ZBR A; 3G9K D; 1J7E A; 2ROH A; 4L9K A; 4LUH A; 4FK5 B; 1MA9 A; 2KBZ A; 5D7G A; 2BXM A; 1MIY A; 3W1S A; 2BXA A; 3M99 C; 4OR0 A; 2QHB A; 4L9Q A; 4MBE C; 2NNW A; 3B9M A; 3CX9 A; 1VZS A; 4IW2 A; 1E7G A; 2NQO A; 4J2V A; 1KDX A; 2I30 A; 3GQU A; 3FWB C; 3KIK A; 4GDK B; 3SIV B; 2BXL A; 3V09 A; 1E7H A; 4I9O A; 2BXN A; 4GDX A; 1KXP D; 2LQI A; 1E7B A; 1H9Z A; 3VQI A; 2DBX A; 3ICX A; 2BXF A; 1LOT A; 2BXO A; 3BPJ A; 1BKE A; 2DYO A; 3B9L A; 4S1Y A; 1AO6 A; 3NVI A; 2QM6 A; 4ZUX V; 4F5V A; 2XVQ A; 5IJF A; 2I2Z A; 2VUF A; 4D7X A; 2Z8I A; 2K0N A; 3KJL A; 4M70 B; 5HOZ A; 3MHS B; 2YDF A; 2XW0 A; 4FJC B; 5DBY A; 4PO0 A; 3NVM A; 5IIU A; 2LXS A; 2KWF A; 3JRY A; 4FIP B; 4GDL B; 3JQZ A; 3A75 A; 3PLA A; 4DHX B; 3H3A A; 1B7E A; 1KW2 A; 3GA9 L; 3LU6 A; 1BM0 A; 4F5T A; 4JK4 A; 2BXC A; 4ZCG A; 5GIO A; 1E7C A; 1HK5 A; 1HK3 A; 1N5U A; 4Z69 A; 2Z8K A; 2CKX A; 3WHR A; 4TQ0 A; 2XVV A; 3WHQ A; 2XVU A; 4N0F D; 5GHK A; 3WHS A; 4G01 A; 4IW1 A; 3MHH B; 2DYM A; 4K71 A; 3TDL A; 1LNS A; 2BXI A; 1TF0 A; 1GNI A; 2XW1 A; 1MIV A; 1BJ5 A; 2BXG A; 1MM8 A; 2LOQ A; 1SB0 A; 4BKE A; 1UOR A; 3SQJ A; 5ID9 A; 5IJ5 A; 4E99 A; 4OTU A; 1HA2 A; 1HK4 A; 4N0U D; 1NT2 B; 4LA0 A; 1E78 A; 4ZBK A; 1IJG A; 1VFI A; 4ZBQ A; 2BX8 A; 4LB2 A; 4OT2 A; 3LU8 A; 1MIW A; 2E0X A; 4L8U A; 5GIP A; 4N3Z A; 1MUH A; 5IIX A; 1TXU A; 2AGH B; 4NAW B; 1E7I A; 4WA6 B; 3GQX A; 4ZC6 A; 1FOU A; 3FNM A; 4G04 A; 2XVW A; 5FUO A; 4W4U B; 3A73 A; 2QMC A; 1JNB A; 3V08 A; 2EFC A; 4HGK A; 4F5U A; 2EFD A; 2Z8J A; 2BXD A; 4HGM B; 2BXB A; #chains in the Genus database with same CATH homology 3ECP A; 1MUS A; 4DM0 A; 1B7E A; 1MUH A; 1MM8 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
