3ECPA

Crystal structure of tn5 transposase complexed with 5' phosphorylated transposon end dna
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
475
structure length
458
Chain Sequence
TSALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQLRESFTPSQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna recombination/dna
molecule keywords Tn5 transposase
publication title Phosphate coordination and movement of DNA in the Tn5 synaptic complex: role of the (R)YREK motif
pubmed doi rcsb
source organism Escherichia coli
total genus 156
structure length 458
sequence length 475
ec nomenclature
pdb deposition date 2008-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 3ecpA01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 3ecpA03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 3ecpA02
3ECPA 1MUSA 1MUHA 4DM0A 1B7EA 1MM8A
chains in the Genus database with same CATH superfamily
3SIUB 1NT2B 3ICXA 5ID9A 5IIXA 4FK5B 2Z8IA 4G03A 1JNBA 4DHXB 1MUSA 4D7XA 4L9KA 5GINA 1H9ZA 1J78A 1MIYA 1VFIA 3G9KD 3V03A 2XSIA 1AO6A 2QHBA 4K71A 5FUOA 2DYOA 2BXOA 1O9XA 2OT3A 4N0UD 2XW1A 4NAWB 3UIVA 1H5WA 2JUHA 2AJEA 4LUHA 4IW1A 4HGMB 5GHKA 4MBEC 4J2VA 2LOQA 4F5TA 2BXAA 2Z8KA 3JRYA 4N0FD 5DBYA 2NQOA 3GA9L 3H3AA 4F5VA 1KDXA 3A75A 3KJLA 4W4UB 1SB0A 3MHHB 2LXSA 3WHQA 4C31B 5IJ5A 1E7IA 1BKEA 5IJEA 5IFOA 4S1YA 1E7EA 3MHSB 1LOTA 2XMOA 1FOUA 1UORA 4GDKB 5HOZA 5IJFA 3WHSA 1B7EA 4GDXA 1E7CA 4ZBRA 4BY9C 1E7AA 2DBWA 4L9QA 1E7HA 1HK4A 3M99C 1LNSA 3FNMA 3V09A 3LU6A 2EFDA 1KXPD 2DBUA 2XVWA 4ZCGA 5B5TA 5D7GA 3NMUA 2XVVA 4Z69A 4HGKA 4GG2A 2OZBB 2BXHA 2K0NA 2YDFA 1MIWA 2BXLA 1MA9A 2BXNA 2BXPA 3NVMA 5IIHA 1N5UA 1HK2A 4IW2A 4Z9OA 5IIUA 4ZUXV 3FWBC 3LU8A 3JQZA 2BXMA 2BXBA 4PO0A 3V08A 3H37A 3ECPA 1IJGA 2EFCA 4LB9A 5GIPA 2GUTA 1HK5A 3B9MA 4N3ZA 5BPKA 2DYMA 1E7GA 1KW2A 2V36A 4FJCB 4ZBKA 4DM0A 1MM8A 3NVKA 1HK3A 4OTUA 1HA2A 1E7FA 2XVUA 2DBXA 5DQFA 4G04A 4TQ1A 4LA0A 4ZBQA 2VDBA 3PLAA 2VUFA 4JK4A 3VQIA 2Z8JA 4E99A 4WA6B 4F5UA 2XW0A 1J7EA 1GNIA 2BXQA 5ID7A 4F5SA 1HK1A 3KIKA 2LQHA 2AGHB 1MIVA 3LU7A 3SQJA 4M70B 3W1SA 1BJ5A 3TDLA 4I9OA 1VZSA 4BKEA 4EMXA 2QM6A 2ROHA 2CKXA 2BXCA 2EFEA 2BX8A 4K2CA 2BXIA 3SIVB 3WHRA 2E0XA 4LB2A 2DG5A 1MUHA 3GQXA 2E0YA 4OTTA 1E7BA 1E78A 2BXFA 3BPJA 4L8UA 2KWFA 2I30A 2KBZA 2LQIA 2QMCA 1BM0A 4OR0A 1TXUA 2NNWA 3GQUA 3A73A 2LXTA 1TF0A 4LUFA 2BXDA 2BXGA 5GIOA 2EFHA 3NVIA 4GDLB 2I2ZA 2BXKA 3CX9A 2VUEA 4TQ0A 4FIPB 4ZC6A 4OT2A 3B9LA 1GNJA 2BXEA 4G01A 2XVQA 3FWCC
chains in the Genus database with same CATH topology
3ECPA 1MUSA 1MUHA 4DM0A 1B7EA 1MM8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ECP A;  1MUS A;  1MUH A;  4DM0 A;  1B7E A;  1MM8 A; 
#chains in the Genus database with same CATH topology
 3SIU B;  1NT2 B;  3ICX A;  5ID9 A;  5IIX A;  4FK5 B;  2Z8I A;  4G03 A;  1JNB A;  4DHX B;  1MUS A;  4D7X A;  4L9K A;  5GIN A;  1H9Z A;  1J78 A;  1MIY A;  1VFI A;  3G9K D;  3V03 A;  2XSI A;  1AO6 A;  2QHB A;  4K71 A;  5FUO A;  2DYO A;  2BXO A;  1O9X A;  2OT3 A;  4N0U D;  2XW1 A;  4NAW B;  3UIV A;  1H5W A;  2JUH A;  2AJE A;  4LUH A;  4IW1 A;  4HGM B;  5GHK A;  4MBE C;  4J2V A;  2LOQ A;  4F5T A;  2BXA A;  2Z8K A;  3JRY A;  4N0F D;  5DBY A;  2NQO A;  3GA9 L;  3H3A A;  4F5V A;  1KDX A;  3A75 A;  3KJL A;  4W4U B;  1SB0 A;  3MHH B;  2LXS A;  3WHQ A;  4C31 B;  5IJ5 A;  1E7I A;  1BKE A;  5IJE A;  5IFO A;  4S1Y A;  1E7E A;  3MHS B;  1LOT A;  2XMO A;  1FOU A;  1UOR A;  4GDK B;  5HOZ A;  5IJF A;  3WHS A;  1B7E A;  4GDX A;  1E7C A;  4ZBR A;  4BY9 C;  1E7A A;  2DBW A;  4L9Q A;  1E7H A;  1HK4 A;  3M99 C;  1LNS A;  3FNM A;  3V09 A;  3LU6 A;  2EFD A;  1KXP D;  2DBU A;  2XVW A;  4ZCG A;  5B5T A;  5D7G A;  3NMU A;  2XVV A;  4Z69 A;  4HGK A;  4GG2 A;  2OZB B;  2BXH A;  2K0N A;  2YDF A;  1MIW A;  2BXL A;  1MA9 A;  2BXN A;  2BXP A;  3NVM A;  5IIH A;  1N5U A;  1HK2 A;  4IW2 A;  4Z9O A;  5IIU A;  4ZUX V;  3FWB C;  3LU8 A;  3JQZ A;  2BXM A;  2BXB A;  4PO0 A;  3V08 A;  3H37 A;  3ECP A;  1IJG A;  2EFC A;  4LB9 A;  5GIP A;  2GUT A;  1HK5 A;  3B9M A;  4N3Z A;  5BPK A;  2DYM A;  1E7G A;  1KW2 A;  2V36 A;  4FJC B;  4ZBK A;  4DM0 A;  1MM8 A;  3NVK A;  1HK3 A;  4OTU A;  1HA2 A;  1E7F A;  2XVU A;  2DBX A;  5DQF A;  4G04 A;  4TQ1 A;  4LA0 A;  4ZBQ A;  2VDB A;  3PLA A;  2VUF A;  4JK4 A;  3VQI A;  2Z8J A;  4E99 A;  4WA6 B;  4F5U A;  2XW0 A;  1J7E A;  1GNI A;  2BXQ A;  5ID7 A;  4F5S A;  1HK1 A;  3KIK A;  2LQH A;  2AGH B;  1MIV A;  3LU7 A;  3SQJ A;  4M70 B;  3W1S A;  1BJ5 A;  3TDL A;  4I9O A;  1VZS A;  4BKE A;  4EMX A;  2QM6 A;  2ROH A;  2CKX A;  2BXC A;  2EFE A;  2BX8 A;  4K2C A;  2BXI A;  3SIV B;  3WHR A;  2E0X A;  4LB2 A;  2DG5 A;  1MUH A;  3GQX A;  2E0Y A;  4OTT A;  1E7B A;  1E78 A;  2BXF A;  3BPJ A;  4L8U A;  2KWF A;  2I30 A;  2KBZ A;  2LQI A;  2QMC A;  1BM0 A;  4OR0 A;  1TXU A;  2NNW A;  3GQU A;  3A73 A;  2LXT A;  1TF0 A;  4LUF A;  2BXD A;  2BXG A;  5GIO A;  2EFH A;  3NVI A;  4GDL B;  2I2Z A;  2BXK A;  3CX9 A;  2VUE A;  4TQ0 A;  4FIP B;  4ZC6 A;  4OT2 A;  3B9L A;  1GNJ A;  2BXE A;  4G01 A;  2XVQ A;  3FWC C; 
#chains in the Genus database with same CATH homology
 3ECP A;  1MUS A;  1MUH A;  4DM0 A;  1B7E A;  1MM8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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