4DM0A

Tn5 transposase: 20mer outside end 2 mn complex
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
475
structure length
460
Chain Sequence
TSALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPVESQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords Transposase for transposon Tn5
publication title Two-metal active site binding of a TN5 transposase synaptic complex
pubmed rcsb
source organism Escherichia coli
total genus 154
structure length 460
sequence length 475
ec nomenclature ec 3.1.-.-:
pdb deposition date 2012-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 4dm0A01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 4dm0A03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 4dm0A02
3ECPA 1MM8A 1MUSA 1B7EA 4DM0A 1MUHA
chains in the Genus database with same CATH superfamily
4N3ZA 4ZC6A 4MBEC 1KDXA 4HGKA 3M99C 2BXMA 2XW1A 3ICXA 2V36A 2AGHB 4G03A 4L9QA 2DYMA 3B9MA 4NAWB 3TDLA 3ECPA 2DBWA 1E7FA 4PO0A 4F5TA 3SIUB 1HK3A 3GQUA 2ROHA 4GDXA 2BXHA 4K71A 4GG2A 2CKXA 3V03A 1HK4A 2EFEA 3CX9A 2VUFA 4S1YA 4ZUXV 4G01A 4I9OA 4C31B 2BXKA 1BKEA 5GINA 2VUEA 2GUTA 2LXTA 1GNJA 4LB2A 4ZBRA 3NVKA 1HK1A 2BX8A 2Z8IA 2DBXA 5IFOA 1N5UA 1JNBA 3FWCC 1VFIA 2QM6A 4BY9C 4OR0A 1LNSA 4G04A 1E7AA 4ZBKA 2BXEA 4EMXA 2BXIA 1AO6A 1J78A 3MHSB 2BXLA 4DHXB 2NQOA 2LQHA 2I2ZA 5FUOA 4L9KA 1LOTA 3LU6A 4FK5B 3LU8A 1TF0A 3A73A 5ID9A 4W4UB 4WA6B 2XMOA 4HGMB 1B7EA 2BXBA 2BXDA 1TXUA 3H3AA 1HA2A 4TQ1A 2JUHA 2BXGA 2NNWA 4Z9OA 1HK2A 1UORA 2XVUA 3G9KD 2I30A 2BXQA 4F5SA 4GDLB 1GNIA 5DBYA 4ZCGA 3LU7A 1E7EA 3JQZA 3GA9L 3MHHB 2OT3A 4LB9A 1E7IA 1MIVA 3NVMA 2LOQA 2QHBA 5ID7A 1H5WA 4N0UD 2K0NA 2XVQA 5GHKA 2XW0A 1VZSA 1MA9A 5IJ5A 1MUSA 2BXCA 2XSIA 5DQFA 2EFCA 3PLAA 4F5UA 1E7HA 4LUHA 1NT2B 3W1SA 1MM8A 2YDFA 1E7BA 3V08A 1E78A 2DG5A 1E7CA 2BXAA 2XVWA 3KJLA 3SQJA 5IIUA 4OTUA 1H9ZA 2AJEA 2LQIA 2KBZA 2QMCA 3V09A 5GIOA 3B9LA 1IJGA 1MIYA 3WHQA 3WHSA 5IIHA 2KWFA 4N0FD 1KW2A 2XVVA 3BPJA 4E99A 1BM0A 3JRYA 2VDBA 4JK4A 2BXOA 1E7GA 3GQXA 5B5TA 4OTTA 5IJEA 4FIPB 4F5VA 4FJCB 4GDKB 2E0XA 4IW2A 4LUFA 4L8UA 3KIKA 3A75A 3UIVA 2OZBB 1FOUA 3VQIA 4Z69A 2BXPA 1KXPD 3FWBC 4J2VA 4BKEA 1MIWA 1BJ5A 5BPKA 2EFHA 3NVIA 3WHRA 5IIXA 1MUHA 1J7EA 3NMUA 3FNMA 2Z8JA 4ZBQA 1SB0A 4D7XA 5IJFA 4LA0A 5GIPA 2DBUA 3SIVB 2EFDA 4IW1A 2E0YA 1O9XA 2DYOA 4OT2A 2BXFA 2Z8KA 4M70B 5HOZA 4TQ0A 4K2CA 2LXSA 1HK5A 5D7GA 4DM0A 3H37A 2BXNA
chains in the Genus database with same CATH topology
3ECPA 1MM8A 1MUSA 1B7EA 4DM0A 1MUHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ECP A;  1MM8 A;  1MUS A;  1B7E A;  4DM0 A;  1MUH A; 
#chains in the Genus database with same CATH topology
 4N3Z A;  4ZC6 A;  4MBE C;  1KDX A;  4HGK A;  3M99 C;  2BXM A;  2XW1 A;  3ICX A;  2V36 A;  2AGH B;  4G03 A;  4L9Q A;  2DYM A;  3B9M A;  4NAW B;  3TDL A;  3ECP A;  2DBW A;  1E7F A;  4PO0 A;  4F5T A;  3SIU B;  1HK3 A;  3GQU A;  2ROH A;  4GDX A;  2BXH A;  4K71 A;  4GG2 A;  2CKX A;  3V03 A;  1HK4 A;  2EFE A;  3CX9 A;  2VUF A;  4S1Y A;  4ZUX V;  4G01 A;  4I9O A;  4C31 B;  2BXK A;  1BKE A;  5GIN A;  2VUE A;  2GUT A;  2LXT A;  1GNJ A;  4LB2 A;  4ZBR A;  3NVK A;  1HK1 A;  2BX8 A;  2Z8I A;  2DBX A;  5IFO A;  1N5U A;  1JNB A;  3FWC C;  1VFI A;  2QM6 A;  4BY9 C;  4OR0 A;  1LNS A;  4G04 A;  1E7A A;  4ZBK A;  2BXE A;  4EMX A;  2BXI A;  1AO6 A;  1J78 A;  3MHS B;  2BXL A;  4DHX B;  2NQO A;  2LQH A;  2I2Z A;  5FUO A;  4L9K A;  1LOT A;  3LU6 A;  4FK5 B;  3LU8 A;  1TF0 A;  3A73 A;  5ID9 A;  4W4U B;  4WA6 B;  2XMO A;  4HGM B;  1B7E A;  2BXB A;  2BXD A;  1TXU A;  3H3A A;  1HA2 A;  4TQ1 A;  2JUH A;  2BXG A;  2NNW A;  4Z9O A;  1HK2 A;  1UOR A;  2XVU A;  3G9K D;  2I30 A;  2BXQ A;  4F5S A;  4GDL B;  1GNI A;  5DBY A;  4ZCG A;  3LU7 A;  1E7E A;  3JQZ A;  3GA9 L;  3MHH B;  2OT3 A;  4LB9 A;  1E7I A;  1MIV A;  3NVM A;  2LOQ A;  2QHB A;  5ID7 A;  1H5W A;  4N0U D;  2K0N A;  2XVQ A;  5GHK A;  2XW0 A;  1VZS A;  1MA9 A;  5IJ5 A;  1MUS A;  2BXC A;  2XSI A;  5DQF A;  2EFC A;  3PLA A;  4F5U A;  1E7H A;  4LUH A;  1NT2 B;  3W1S A;  1MM8 A;  2YDF A;  1E7B A;  3V08 A;  1E78 A;  2DG5 A;  1E7C A;  2BXA A;  2XVW A;  3KJL A;  3SQJ A;  5IIU A;  4OTU A;  1H9Z A;  2AJE A;  2LQI A;  2KBZ A;  2QMC A;  3V09 A;  5GIO A;  3B9L A;  1IJG A;  1MIY A;  3WHQ A;  3WHS A;  5IIH A;  2KWF A;  4N0F D;  1KW2 A;  2XVV A;  3BPJ A;  4E99 A;  1BM0 A;  3JRY A;  2VDB A;  4JK4 A;  2BXO A;  1E7G A;  3GQX A;  5B5T A;  4OTT A;  5IJE A;  4FIP B;  4F5V A;  4FJC B;  4GDK B;  2E0X A;  4IW2 A;  4LUF A;  4L8U A;  3KIK A;  3A75 A;  3UIV A;  2OZB B;  1FOU A;  3VQI A;  4Z69 A;  2BXP A;  1KXP D;  3FWB C;  4J2V A;  4BKE A;  1MIW A;  1BJ5 A;  5BPK A;  2EFH A;  3NVI A;  3WHR A;  5IIX A;  1MUH A;  1J7E A;  3NMU A;  3FNM A;  2Z8J A;  4ZBQ A;  1SB0 A;  4D7X A;  5IJF A;  4LA0 A;  5GIP A;  2DBU A;  3SIV B;  2EFD A;  4IW1 A;  2E0Y A;  1O9X A;  2DYO A;  4OT2 A;  2BXF A;  2Z8K A;  4M70 B;  5HOZ A;  4TQ0 A;  4K2C A;  2LXS A;  1HK5 A;  5D7G A;  4DM0 A;  3H37 A;  2BXN A; 
#chains in the Genus database with same CATH homology
 3ECP A;  1MM8 A;  1MUS A;  1B7E A;  4DM0 A;  1MUH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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