1AJCA

Three-dimensional structure of the d153g mutant of e. coli alkaline phosphatase: a mutant with weaker magnesium binding and increased catalytic activity
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
Knots found
sequence length
449
structure length
446
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQGATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Non specific mono-esterase
source organism Escherichia coli
publication title Crystallographic analysis of reversible metal binding observed in a mutant (Asp153-->Gly) of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
total genus 160
structure length 446
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1995-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ajcA00
1EI6A 4B56A 5C66A 2W5QA 4ZG6A 3A52A 4GTXA 1AJBA 5DLWA 5TJ3A 4CXSA 3TX0A 2W5SA 1URAA 4FDIA 3E2DA 4LRBA 1ED8A 2GA3A 1ED9A 2W5RA 2W8SA 5L0BA 5LRNA 1HDHA 1E33P 3TWZA 3WAWA 3WAYA 1ELZA 3T01A 2XR9A 4ZG7A 4LRFA 2X98A 4KJDA 3NKOA 3DYCA 5LRMA 3WAXA 4N7TA 1Y6VA 1EW2A 1ALIA 4FDJA 5L0KA 2IUCB 4CYRA 5LIAA 4LREA 3MK0A 4LRCA 3T02A 1ANJA 2W8DA 1E3CP 1KHNA 1EJJA 5AJ9A 5KXAA 1KHLA 2IFYA 1AJAA 4NWXA 1ELXA 4MY4A 5IJSA 5L0EA 1AUKA 3DPCA 3WAVA 3MK1A 4CXUA 4GTWA 1URBA 1AJCA 5GOVA 1P49A 1HQAA 1AJDA 1ZEBA 2ANHA 5DLVA 5DLTA 3TG0A 4UPIA 2GLQA 3OT9A 5K4PA 2RH6A 1K7HA 4GTYA 2D1GA 3NKMA 4UPKA 4UOOA 1EW9A 3NKNA 5GRRA 1ALJA 1Y7AA 1ZEDA 1FSUA 2IUCA 3CMRA 4LR8A 5EGEA 5HRTA 3UN2A 3IDDA 4LQYA 2XRGA 4CYSA 1KHJA 2W5WA 3NKPA 1SHNA 1ELYA 1O99A 3SZZA 1EQJA 4ZGAA 1HJKA 1KH9A 5LQQA 3BDFA 4LR2A 4UOPA 1KH4A 4LR7A 4UPLA 1E2SP 2W5VA 3NKQA 2QZUA 1ALKA 4ZG9A 4LR9A 4MIVA 3M7VA 2G9YA 3BDGB 4TN0A 5INHA 2W5XA 2GSOA 3MK2A 5EGHA 3UN5A 1ANIA 3WBHA 1N2LA 3IGZB 1KH7A 3UO0A 2GSUA 3BDHA 3T00A 3ED4A 3SZYA 3NVLA 1KHKA 5IJQA 4LRAA 1O98A 3UN3A 3M8WA 4KM4A 1EW8A 3M8ZA 1B8JA 1ALHA 2ZKTA 3IGYB 1ZEFA 3B5QA 3M8YA 1N2KA 3UNYA 4UORA 3Q3QA 3LXQA 4CXKA 4NWJA 1KH5A 4LRDA 4YR1A 1E1ZP 4MHXA 2W5TA 1SHQA 3BDGA 3NKRA 2GSNA 4GTZA 4KAVA 4UPHA 4KAYA 4KJGA 2VQRA 3KD8A 4QAXA
chains in the Genus database with same CATH superfamily
1EI6A 4B56A 5C66A 2W5QA 4ZG6A 3A52A 4GTXA 1AJBA 5DLWA 5TJ3A 4CXSA 3TX0A 2W5SA 1URAA 4FDIA 3E2DA 4LRBA 1ED8A 2GA3A 1ED9A 2W5RA 2W8SA 5L0BA 5LRNA 1HDHA 1E33P 3TWZA 3WAWA 3WAYA 1ELZA 3T01A 2XR9A 4ZG7A 4LRFA 2X98A 4KJDA 3NKOA 3DYCA 5LRMA 3WAXA 4N7TA 1Y6VA 1EW2A 1ALIA 4FDJA 5L0KA 2IUCB 4CYRA 5LIAA 4LREA 3MK0A 4LRCA 3T02A 1ANJA 2W8DA 1E3CP 1KHNA 1EJJA 5AJ9A 5KXAA 1KHLA 2IFYA 1AJAA 4NWXA 1ELXA 4MY4A 5IJSA 5L0EA 1AUKA 3DPCA 3WAVA 3MK1A 4CXUA 4GTWA 1URBA 1AJCA 5GOVA 1P49A 1HQAA 1AJDA 1ZEBA 2ANHA 5DLVA 5DLTA 3TG0A 4UPIA 2GLQA 3OT9A 5K4PA 2RH6A 1K7HA 4GTYA 2D1GA 3NKMA 4UPKA 4UOOA 1EW9A 3NKNA 5GRRA 1ALJA 1Y7AA 1ZEDA 1FSUA 2IUCA 3CMRA 4LR8A 5EGEA 5HRTA 3UN2A 3IDDA 4LQYA 2XRGA 4CYSA 1KHJA 2W5WA 3NKPA 1SHNA 1ELYA 1O99A 3SZZA 1EQJA 4ZGAA 1HJKA 1KH9A 5LQQA 3BDFA 4LR2A 4UOPA 1KH4A 4LR7A 4UPLA 1E2SP 2W5VA 3NKQA 2QZUA 1ALKA 4ZG9A 4LR9A 4MIVA 3M7VA 2G9YA 3BDGB 4TN0A 5INHA 2W5XA 2GSOA 3MK2A 5EGHA 3UN5A 1ANIA 3WBHA 1N2LA 3IGZB 1KH7A 3UO0A 2GSUA 3BDHA 3T00A 3ED4A 3SZYA 3NVLA 1KHKA 5IJQA 4LRAA 1O98A 3UN3A 3M8WA 4KM4A 1EW8A 3M8ZA 1B8JA 1ALHA 2ZKTA 3IGYB 1ZEFA 3B5QA 3M8YA 1N2KA 3UNYA 4UORA 3Q3QA 3LXQA 4CXKA 4NWJA 1KH5A 4LRDA 4YR1A 1E1ZP 4MHXA 2W5TA 1SHQA 3BDGA 3NKRA 2GSNA 4GTZA 4KAVA 4UPHA 4KAYA 4KJGA 2VQRA 3KD8A 4QAXA
chains in the Genus database with same CATH topology
1EI6A 4B56A 5C66A 2W5QA 4ZG6A 3A52A 4GTXA 1AJBA 5DLWA 5TJ3A 4CXSA 3TX0A 2W5SA 1URAA 4FDIA 3E2DA 4LRBA 1ED8A 2GA3A 1ED9A 2W5RA 2W8SA 5L0BA 5LRNA 1HDHA 1E33P 3TWZA 3WAWA 3WAYA 1ELZA 3T01A 2XR9A 4ZG7A 4LRFA 2X98A 4KJDA 3NKOA 3DYCA 5LRMA 3WAXA 4N7TA 1Y6VA 1EW2A 1ALIA 4FDJA 5L0KA 2IUCB 4CYRA 5LIAA 4LREA 3MK0A 4LRCA 3T02A 1ANJA 2W8DA 1E3CP 1KHNA 1EJJA 5AJ9A 5KXAA 1KHLA 2IFYA 1AJAA 4NWXA 1ELXA 4MY4A 5IJSA 5L0EA 1AUKA 3DPCA 3WAVA 3MK1A 4CXUA 4GTWA 1URBA 1AJCA 5GOVA 1P49A 1HQAA 1AJDA 1ZEBA 2ANHA 5DLVA 5DLTA 3TG0A 4UPIA 2GLQA 3OT9A 5K4PA 2RH6A 1K7HA 4GTYA 2D1GA 3NKMA 4UPKA 4UOOA 1EW9A 3NKNA 5GRRA 1ALJA 1Y7AA 1ZEDA 1FSUA 2IUCA 3CMRA 4LR8A 5EGEA 5HRTA 3UN2A 3IDDA 4LQYA 2XRGA 4CYSA 1KHJA 2W5WA 3NKPA 1SHNA 1ELYA 1O99A 3SZZA 1EQJA 4ZGAA 1HJKA 1KH9A 5LQQA 3BDFA 4LR2A 4UOPA 1KH4A 4LR7A 4UPLA 1E2SP 2W5VA 3NKQA 2QZUA 1ALKA 4ZG9A 4LR9A 4MIVA 3M7VA 2G9YA 3BDGB 4TN0A 5INHA 2W5XA 2GSOA 3MK2A 5EGHA 3UN5A 1ANIA 3WBHA 1N2LA 3IGZB 1KH7A 3UO0A 2GSUA 3BDHA 3T00A 3ED4A 3SZYA 3NVLA 1KHKA 5IJQA 4LRAA 1O98A 3UN3A 3M8WA 4KM4A 1EW8A 3M8ZA 1B8JA 1ALHA 2ZKTA 3IGYB 1ZEFA 3B5QA 3M8YA 1N2KA 3UNYA 4UORA 3Q3QA 3LXQA 4CXKA 4NWJA 1KH5A 4LRDA 4YR1A 1E1ZP 4MHXA 2W5TA 1SHQA 3BDGA 3NKRA 2GSNA 4GTZA 4KAVA 4UPHA 4KAYA 4KJGA 2VQRA 3KD8A 4QAXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EI6 A;  4B56 A;  5C66 A;  2W5Q A;  4ZG6 A;  3A52 A;  4GTX A;  1AJB A;  5DLW A;  5TJ3 A;  4CXS A;  3TX0 A;  2W5S A;  1URA A;  4FDI A;  3E2D A;  4LRB A;  1ED8 A;  2GA3 A;  1ED9 A;  2W5R A;  2W8S A;  5L0B A;  5LRN A;  1HDH A;  1E33 P;  3TWZ A;  3WAW A;  3WAY A;  1ELZ A;  3T01 A;  2XR9 A;  4ZG7 A;  4LRF A;  2X98 A;  4KJD A;  3NKO A;  3DYC A;  5LRM A;  3WAX A;  4N7T A;  1Y6V A;  1EW2 A;  1ALI A;  4FDJ A;  5L0K A;  2IUC B;  4CYR A;  5LIA A;  4LRE A;  3MK0 A;  4LRC A;  3T02 A;  1ANJ A;  2W8D A;  1E3C P;  1KHN A;  1EJJ A;  5AJ9 A;  5KXA A;  1KHL A;  2IFY A;  1AJA A;  4NWX A;  1ELX A;  4MY4 A;  5IJS A;  5L0E A;  1AUK A;  3DPC A;  3WAV A;  3MK1 A;  4CXU A;  4GTW A;  1URB A;  1AJC A;  5GOV A;  1P49 A;  1HQA A;  1AJD A;  1ZEB A;  2ANH A;  5DLV A;  5DLT A;  3TG0 A;  4UPI A;  2GLQ A;  3OT9 A;  5K4P A;  2RH6 A;  1K7H A;  4GTY A;  2D1G A;  3NKM A;  4UPK A;  4UOO A;  1EW9 A;  3NKN A;  5GRR A;  1ALJ A;  1Y7A A;  1ZED A;  1FSU A;  2IUC A;  3CMR A;  4LR8 A;  5EGE A;  5HRT A;  3UN2 A;  3IDD A;  4LQY A;  2XRG A;  4CYS A;  1KHJ A;  2W5W A;  3NKP A;  1SHN A;  1ELY A;  1O99 A;  3SZZ A;  1EQJ A;  4ZGA A;  1HJK A;  1KH9 A;  5LQQ A;  3BDF A;  4LR2 A;  4UOP A;  1KH4 A;  4LR7 A;  4UPL A;  1E2S P;  2W5V A;  3NKQ A;  2QZU A;  1ALK A;  4ZG9 A;  4LR9 A;  4MIV A;  3M7V A;  2G9Y A;  3BDG B;  4TN0 A;  5INH A;  2W5X A;  2GSO A;  3MK2 A;  5EGH A;  3UN5 A;  1ANI A;  3WBH A;  1N2L A;  3IGZ B;  1KH7 A;  3UO0 A;  2GSU A;  3BDH A;  3T00 A;  3ED4 A;  3SZY A;  3NVL A;  1KHK A;  5IJQ A;  4LRA A;  1O98 A;  3UN3 A;  3M8W A;  4KM4 A;  1EW8 A;  3M8Z A;  1B8J A;  1ALH A;  2ZKT A;  3IGY B;  1ZEF A;  3B5Q A;  3M8Y A;  1N2K A;  3UNY A;  4UOR A;  3Q3Q A;  3LXQ A;  4CXK A;  4NWJ A;  1KH5 A;  4LRD A;  4YR1 A;  1E1Z P;  4MHX A;  2W5T A;  1SHQ A;  3BDG A;  3NKR A;  2GSN A;  4GTZ A;  4KAV A;  4UPH A;  4KAY A;  4KJG A;  2VQR A;  3KD8 A;  4QAX A; 
#chains in the Genus database with same CATH topology
 1EI6 A;  4B56 A;  5C66 A;  2W5Q A;  4ZG6 A;  3A52 A;  4GTX A;  1AJB A;  5DLW A;  5TJ3 A;  4CXS A;  3TX0 A;  2W5S A;  1URA A;  4FDI A;  3E2D A;  4LRB A;  1ED8 A;  2GA3 A;  1ED9 A;  2W5R A;  2W8S A;  5L0B A;  5LRN A;  1HDH A;  1E33 P;  3TWZ A;  3WAW A;  3WAY A;  1ELZ A;  3T01 A;  2XR9 A;  4ZG7 A;  4LRF A;  2X98 A;  4KJD A;  3NKO A;  3DYC A;  5LRM A;  3WAX A;  4N7T A;  1Y6V A;  1EW2 A;  1ALI A;  4FDJ A;  5L0K A;  2IUC B;  4CYR A;  5LIA A;  4LRE A;  3MK0 A;  4LRC A;  3T02 A;  1ANJ A;  2W8D A;  1E3C P;  1KHN A;  1EJJ A;  5AJ9 A;  5KXA A;  1KHL A;  2IFY A;  1AJA A;  4NWX A;  1ELX A;  4MY4 A;  5IJS A;  5L0E A;  1AUK A;  3DPC A;  3WAV A;  3MK1 A;  4CXU A;  4GTW A;  1URB A;  1AJC A;  5GOV A;  1P49 A;  1HQA A;  1AJD A;  1ZEB A;  2ANH A;  5DLV A;  5DLT A;  3TG0 A;  4UPI A;  2GLQ A;  3OT9 A;  5K4P A;  2RH6 A;  1K7H A;  4GTY A;  2D1G A;  3NKM A;  4UPK A;  4UOO A;  1EW9 A;  3NKN A;  5GRR A;  1ALJ A;  1Y7A A;  1ZED A;  1FSU A;  2IUC A;  3CMR A;  4LR8 A;  5EGE A;  5HRT A;  3UN2 A;  3IDD A;  4LQY A;  2XRG A;  4CYS A;  1KHJ A;  2W5W A;  3NKP A;  1SHN A;  1ELY A;  1O99 A;  3SZZ A;  1EQJ A;  4ZGA A;  1HJK A;  1KH9 A;  5LQQ A;  3BDF A;  4LR2 A;  4UOP A;  1KH4 A;  4LR7 A;  4UPL A;  1E2S P;  2W5V A;  3NKQ A;  2QZU A;  1ALK A;  4ZG9 A;  4LR9 A;  4MIV A;  3M7V A;  2G9Y A;  3BDG B;  4TN0 A;  5INH A;  2W5X A;  2GSO A;  3MK2 A;  5EGH A;  3UN5 A;  1ANI A;  3WBH A;  1N2L A;  3IGZ B;  1KH7 A;  3UO0 A;  2GSU A;  3BDH A;  3T00 A;  3ED4 A;  3SZY A;  3NVL A;  1KHK A;  5IJQ A;  4LRA A;  1O98 A;  3UN3 A;  3M8W A;  4KM4 A;  1EW8 A;  3M8Z A;  1B8J A;  1ALH A;  2ZKT A;  3IGY B;  1ZEF A;  3B5Q A;  3M8Y A;  1N2K A;  3UNY A;  4UOR A;  3Q3Q A;  3LXQ A;  4CXK A;  4NWJ A;  1KH5 A;  4LRD A;  4YR1 A;  1E1Z P;  4MHX A;  2W5T A;  1SHQ A;  3BDG A;  3NKR A;  2GSN A;  4GTZ A;  4KAV A;  4UPH A;  4KAY A;  4KJG A;  2VQR A;  3KD8 A;  4QAX A; 
#chains in the Genus database with same CATH homology
 1EI6 A;  4B56 A;  5C66 A;  2W5Q A;  4ZG6 A;  3A52 A;  4GTX A;  1AJB A;  5DLW A;  5TJ3 A;  4CXS A;  3TX0 A;  2W5S A;  1URA A;  4FDI A;  3E2D A;  4LRB A;  1ED8 A;  2GA3 A;  1ED9 A;  2W5R A;  2W8S A;  5L0B A;  5LRN A;  1HDH A;  1E33 P;  3TWZ A;  3WAW A;  3WAY A;  1ELZ A;  3T01 A;  2XR9 A;  4ZG7 A;  4LRF A;  2X98 A;  4KJD A;  3NKO A;  3DYC A;  5LRM A;  3WAX A;  4N7T A;  1Y6V A;  1EW2 A;  1ALI A;  4FDJ A;  5L0K A;  2IUC B;  4CYR A;  5LIA A;  4LRE A;  3MK0 A;  4LRC A;  3T02 A;  1ANJ A;  2W8D A;  1E3C P;  1KHN A;  1EJJ A;  5AJ9 A;  5KXA A;  1KHL A;  2IFY A;  1AJA A;  4NWX A;  1ELX A;  4MY4 A;  5IJS A;  5L0E A;  1AUK A;  3DPC A;  3WAV A;  3MK1 A;  4CXU A;  4GTW A;  1URB A;  1AJC A;  5GOV A;  1P49 A;  1HQA A;  1AJD A;  1ZEB A;  2ANH A;  5DLV A;  5DLT A;  3TG0 A;  4UPI A;  2GLQ A;  3OT9 A;  5K4P A;  2RH6 A;  1K7H A;  4GTY A;  2D1G A;  3NKM A;  4UPK A;  4UOO A;  1EW9 A;  3NKN A;  5GRR A;  1ALJ A;  1Y7A A;  1ZED A;  1FSU A;  2IUC A;  3CMR A;  4LR8 A;  5EGE A;  5HRT A;  3UN2 A;  3IDD A;  4LQY A;  2XRG A;  4CYS A;  1KHJ A;  2W5W A;  3NKP A;  1SHN A;  1ELY A;  1O99 A;  3SZZ A;  1EQJ A;  4ZGA A;  1HJK A;  1KH9 A;  5LQQ A;  3BDF A;  4LR2 A;  4UOP A;  1KH4 A;  4LR7 A;  4UPL A;  1E2S P;  2W5V A;  3NKQ A;  2QZU A;  1ALK A;  4ZG9 A;  4LR9 A;  4MIV A;  3M7V A;  2G9Y A;  3BDG B;  4TN0 A;  5INH A;  2W5X A;  2GSO A;  3MK2 A;  5EGH A;  3UN5 A;  1ANI A;  3WBH A;  1N2L A;  3IGZ B;  1KH7 A;  3UO0 A;  2GSU A;  3BDH A;  3T00 A;  3ED4 A;  3SZY A;  3NVL A;  1KHK A;  5IJQ A;  4LRA A;  1O98 A;  3UN3 A;  3M8W A;  4KM4 A;  1EW8 A;  3M8Z A;  1B8J A;  1ALH A;  2ZKT A;  3IGY B;  1ZEF A;  3B5Q A;  3M8Y A;  1N2K A;  3UNY A;  4UOR A;  3Q3Q A;  3LXQ A;  4CXK A;  4NWJ A;  1KH5 A;  4LRD A;  4YR1 A;  1E1Z P;  4MHX A;  2W5T A;  1SHQ A;  3BDG A;  3NKR A;  2GSN A;  4GTZ A;  4KAV A;  4UPH A;  4KAY A;  4KJG A;  2VQR A;  3KD8 A;  4QAX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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