1AJCA

Three-dimensional structure of the d153g mutant of e. coli alkaline phosphatase: a mutant with weaker magnesium binding and increased catalytic activity
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
Knots found
sequence length
449
structure length
446
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQGATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords ALKALINE PHOSPHATASE
publication title Crystallographic analysis of reversible metal binding observed in a mutant (Asp153-->Gly) of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Non specific mono-esterase
total genus 160
structure length 446
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1995-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ajcA00
1AJBA 3NKNA 5KXAA 1Y6VA 3NKOA 3TX0A 5L0BA 1HDHA 1SHQA 3M8ZA 3IGZB 4LRCA 1EQJA 5LIAA 1FSUA 3BDGB 4UORA 1ALHA 3T02A 4CYSA 5INHA 2IFYA 2XRGA 5DLWA 1O98A 3T00A 4MIVA 1KHKA 4ZG9A 4QAXA 4YR1A 2RH6A 3E2DA 1Y7AA 4B56A 5HRTA 1AJCA 4KJGA 4NWXA 4UPKA 3SZZA 1EW8A 2W5XA 1URBA 3BDFA 1ALIA 1SHNA 3A52A 4KJDA 3NKQA 3WAYA 4LQYA 2GSUA 4KM4A 5DLVA 5GOVA 1KH7A 2IUCB 5LRNA 3KD8A 4N7TA 3MK0A 4TN0A 1KH5A 5LQQA 1B8JA 2XR9A 1ZEDA 2GSOA 2X98A 2W8SA 2QZUA 3SZYA 1ED9A 1ALJA 3UN2A 1AJAA 2D1GA 3CMRA 1EW9A 5IJSA 4CXSA 4CXUA 2W5VA 3WAWA 3UNYA 1ZEBA 4ZG6A 4KAYA 3NKRA 1KHNA 4LR2A 3TG0A 3ED4A 1EJJA 5LRMA 5TJ3A 1EW2A 1ANJA 4FDIA 3NKMA 2W5TA 4CYRA 1E33P 4LR7A 2W8DA 3M7VA 1KHJA 4ZG7A 4GTWA 4UPIA 3LXQA 1ED8A 4FDJA 2ZKTA 5L0EA 2W5RA 1AJDA 3MK2A 3T01A 1URAA 3BDGA 3BDHA 2W5QA 3DPCA 4UOOA 1E1ZP 4UPHA 1HQAA 5DLTA 1ANIA 3WBHA 4KAVA 3TWZA 2GSNA 3OT9A 3IGYB 1KH4A 2GA3A 4GTXA 3B5QA 4UOPA 4MY4A 2W5WA 5EGHA 5IJQA 3UN3A 4MHXA 2ANHA 1E3CP 4LR9A 5EGEA 5L0KA 1P49A 3MK1A 3M8WA 5AJ9A 4LRDA 1N2LA 2IUCA 1ELYA 1HJKA 1KH9A 4GTZA 2W5SA 1KHLA 1N2KA 2GLQA 1AUKA 3WAXA 4LREA 3WAVA 5C66A 4LRBA 1ZEFA 4CXKA 4LRAA 5GRRA 1ELZA 1E2SP 3UO0A 1EI6A 1K7HA 1O99A 3IDDA 3DYCA 3M8YA 5K4PA 2VQRA 4ZGAA 3UN5A 4GTYA 3NKPA 1ALKA 1ELXA 4UPLA 2G9YA 4NWJA 4LRFA 3Q3QA 4LR8A 3NVLA
chains in the Genus database with same CATH superfamily
1AJBA 3NKNA 5KXAA 1Y6VA 3NKOA 3TX0A 5L0BA 1HDHA 1SHQA 3M8ZA 3IGZB 4LRCA 1EQJA 5LIAA 1FSUA 3BDGB 4UORA 1ALHA 3T02A 4CYSA 5INHA 2IFYA 2XRGA 5DLWA 1O98A 3T00A 4MIVA 1KHKA 4ZG9A 4QAXA 4YR1A 2RH6A 3E2DA 1Y7AA 4B56A 5HRTA 1AJCA 4KJGA 4NWXA 4UPKA 3SZZA 1EW8A 2W5XA 1URBA 3BDFA 1ALIA 1SHNA 3A52A 4KJDA 3NKQA 3WAYA 4LQYA 2GSUA 4KM4A 5DLVA 5GOVA 1KH7A 2IUCB 5LRNA 3KD8A 4N7TA 3MK0A 4TN0A 1KH5A 5LQQA 1B8JA 2XR9A 1ZEDA 2GSOA 2X98A 2W8SA 2QZUA 3SZYA 1ED9A 1ALJA 3UN2A 1AJAA 2D1GA 3CMRA 1EW9A 5IJSA 4CXSA 4CXUA 2W5VA 3WAWA 3UNYA 1ZEBA 4ZG6A 4KAYA 3NKRA 1KHNA 4LR2A 3TG0A 3ED4A 1EJJA 5LRMA 5TJ3A 1EW2A 1ANJA 4FDIA 3NKMA 2W5TA 4CYRA 1E33P 4LR7A 2W8DA 3M7VA 1KHJA 4ZG7A 4GTWA 4UPIA 3LXQA 1ED8A 4FDJA 2ZKTA 5L0EA 2W5RA 1AJDA 3MK2A 3T01A 1URAA 3BDGA 3BDHA 2W5QA 3DPCA 4UOOA 1E1ZP 4UPHA 1HQAA 5DLTA 1ANIA 3WBHA 4KAVA 3TWZA 2GSNA 3OT9A 3IGYB 1KH4A 2GA3A 4GTXA 3B5QA 4UOPA 4MY4A 2W5WA 5EGHA 5IJQA 3UN3A 4MHXA 2ANHA 1E3CP 4LR9A 5EGEA 5L0KA 1P49A 3MK1A 3M8WA 5AJ9A 4LRDA 1N2LA 2IUCA 1ELYA 1HJKA 1KH9A 4GTZA 2W5SA 1KHLA 1N2KA 2GLQA 1AUKA 3WAXA 4LREA 3WAVA 5C66A 4LRBA 1ZEFA 4CXKA 4LRAA 5GRRA 1ELZA 1E2SP 3UO0A 1EI6A 1K7HA 1O99A 3IDDA 3DYCA 3M8YA 5K4PA 2VQRA 4ZGAA 3UN5A 4GTYA 3NKPA 1ALKA 1ELXA 4UPLA 2G9YA 4NWJA 4LRFA 3Q3QA 4LR8A 3NVLA
chains in the Genus database with same CATH topology
1AJBA 3NKNA 5KXAA 1Y6VA 3NKOA 3TX0A 5L0BA 1HDHA 1SHQA 3M8ZA 3IGZB 4LRCA 1EQJA 5LIAA 1FSUA 3BDGB 4UORA 1ALHA 3T02A 4CYSA 5INHA 2IFYA 2XRGA 5DLWA 1O98A 3T00A 4MIVA 1KHKA 4ZG9A 4QAXA 4YR1A 2RH6A 3E2DA 1Y7AA 4B56A 5HRTA 1AJCA 4KJGA 4NWXA 4UPKA 3SZZA 1EW8A 2W5XA 1URBA 3BDFA 1ALIA 1SHNA 3A52A 4KJDA 3NKQA 3WAYA 4LQYA 2GSUA 4KM4A 5DLVA 5GOVA 1KH7A 2IUCB 5LRNA 3KD8A 4N7TA 3MK0A 4TN0A 1KH5A 5LQQA 1B8JA 2XR9A 1ZEDA 2GSOA 2X98A 2W8SA 2QZUA 3SZYA 1ED9A 1ALJA 3UN2A 1AJAA 2D1GA 3CMRA 1EW9A 5IJSA 4CXSA 4CXUA 2W5VA 3WAWA 3UNYA 1ZEBA 4ZG6A 4KAYA 3NKRA 1KHNA 4LR2A 3TG0A 3ED4A 1EJJA 5LRMA 5TJ3A 1EW2A 1ANJA 4FDIA 3NKMA 2W5TA 4CYRA 1E33P 4LR7A 2W8DA 3M7VA 1KHJA 4ZG7A 4GTWA 4UPIA 3LXQA 1ED8A 4FDJA 2ZKTA 5L0EA 2W5RA 1AJDA 3MK2A 3T01A 1URAA 3BDGA 3BDHA 2W5QA 3DPCA 4UOOA 1E1ZP 4UPHA 1HQAA 5DLTA 1ANIA 3WBHA 4KAVA 3TWZA 2GSNA 3OT9A 3IGYB 1KH4A 2GA3A 4GTXA 3B5QA 4UOPA 4MY4A 2W5WA 5EGHA 5IJQA 3UN3A 4MHXA 2ANHA 1E3CP 4LR9A 5EGEA 5L0KA 1P49A 3MK1A 3M8WA 5AJ9A 4LRDA 1N2LA 2IUCA 1ELYA 1HJKA 1KH9A 4GTZA 2W5SA 1KHLA 1N2KA 2GLQA 1AUKA 3WAXA 4LREA 3WAVA 5C66A 4LRBA 1ZEFA 4CXKA 4LRAA 5GRRA 1ELZA 1E2SP 3UO0A 1EI6A 1K7HA 1O99A 3IDDA 3DYCA 3M8YA 5K4PA 2VQRA 4ZGAA 3UN5A 4GTYA 3NKPA 1ALKA 1ELXA 4UPLA 2G9YA 4NWJA 4LRFA 3Q3QA 4LR8A 3NVLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AJB A;  3NKN A;  5KXA A;  1Y6V A;  3NKO A;  3TX0 A;  5L0B A;  1HDH A;  1SHQ A;  3M8Z A;  3IGZ B;  4LRC A;  1EQJ A;  5LIA A;  1FSU A;  3BDG B;  4UOR A;  1ALH A;  3T02 A;  4CYS A;  5INH A;  2IFY A;  2XRG A;  5DLW A;  1O98 A;  3T00 A;  4MIV A;  1KHK A;  4ZG9 A;  4QAX A;  4YR1 A;  2RH6 A;  3E2D A;  1Y7A A;  4B56 A;  5HRT A;  1AJC A;  4KJG A;  4NWX A;  4UPK A;  3SZZ A;  1EW8 A;  2W5X A;  1URB A;  3BDF A;  1ALI A;  1SHN A;  3A52 A;  4KJD A;  3NKQ A;  3WAY A;  4LQY A;  2GSU A;  4KM4 A;  5DLV A;  5GOV A;  1KH7 A;  2IUC B;  5LRN A;  3KD8 A;  4N7T A;  3MK0 A;  4TN0 A;  1KH5 A;  5LQQ A;  1B8J A;  2XR9 A;  1ZED A;  2GSO A;  2X98 A;  2W8S A;  2QZU A;  3SZY A;  1ED9 A;  1ALJ A;  3UN2 A;  1AJA A;  2D1G A;  3CMR A;  1EW9 A;  5IJS A;  4CXS A;  4CXU A;  2W5V A;  3WAW A;  3UNY A;  1ZEB A;  4ZG6 A;  4KAY A;  3NKR A;  1KHN A;  4LR2 A;  3TG0 A;  3ED4 A;  1EJJ A;  5LRM A;  5TJ3 A;  1EW2 A;  1ANJ A;  4FDI A;  3NKM A;  2W5T A;  4CYR A;  1E33 P;  4LR7 A;  2W8D A;  3M7V A;  1KHJ A;  4ZG7 A;  4GTW A;  4UPI A;  3LXQ A;  1ED8 A;  4FDJ A;  2ZKT A;  5L0E A;  2W5R A;  1AJD A;  3MK2 A;  3T01 A;  1URA A;  3BDG A;  3BDH A;  2W5Q A;  3DPC A;  4UOO A;  1E1Z P;  4UPH A;  1HQA A;  5DLT A;  1ANI A;  3WBH A;  4KAV A;  3TWZ A;  2GSN A;  3OT9 A;  3IGY B;  1KH4 A;  2GA3 A;  4GTX A;  3B5Q A;  4UOP A;  4MY4 A;  2W5W A;  5EGH A;  5IJQ A;  3UN3 A;  4MHX A;  2ANH A;  1E3C P;  4LR9 A;  5EGE A;  5L0K A;  1P49 A;  3MK1 A;  3M8W A;  5AJ9 A;  4LRD A;  1N2L A;  2IUC A;  1ELY A;  1HJK A;  1KH9 A;  4GTZ A;  2W5S A;  1KHL A;  1N2K A;  2GLQ A;  1AUK A;  3WAX A;  4LRE A;  3WAV A;  5C66 A;  4LRB A;  1ZEF A;  4CXK A;  4LRA A;  5GRR A;  1ELZ A;  1E2S P;  3UO0 A;  1EI6 A;  1K7H A;  1O99 A;  3IDD A;  3DYC A;  3M8Y A;  5K4P A;  2VQR A;  4ZGA A;  3UN5 A;  4GTY A;  3NKP A;  1ALK A;  1ELX A;  4UPL A;  2G9Y A;  4NWJ A;  4LRF A;  3Q3Q A;  4LR8 A;  3NVL A; 
#chains in the Genus database with same CATH topology
 1AJB A;  3NKN A;  5KXA A;  1Y6V A;  3NKO A;  3TX0 A;  5L0B A;  1HDH A;  1SHQ A;  3M8Z A;  3IGZ B;  4LRC A;  1EQJ A;  5LIA A;  1FSU A;  3BDG B;  4UOR A;  1ALH A;  3T02 A;  4CYS A;  5INH A;  2IFY A;  2XRG A;  5DLW A;  1O98 A;  3T00 A;  4MIV A;  1KHK A;  4ZG9 A;  4QAX A;  4YR1 A;  2RH6 A;  3E2D A;  1Y7A A;  4B56 A;  5HRT A;  1AJC A;  4KJG A;  4NWX A;  4UPK A;  3SZZ A;  1EW8 A;  2W5X A;  1URB A;  3BDF A;  1ALI A;  1SHN A;  3A52 A;  4KJD A;  3NKQ A;  3WAY A;  4LQY A;  2GSU A;  4KM4 A;  5DLV A;  5GOV A;  1KH7 A;  2IUC B;  5LRN A;  3KD8 A;  4N7T A;  3MK0 A;  4TN0 A;  1KH5 A;  5LQQ A;  1B8J A;  2XR9 A;  1ZED A;  2GSO A;  2X98 A;  2W8S A;  2QZU A;  3SZY A;  1ED9 A;  1ALJ A;  3UN2 A;  1AJA A;  2D1G A;  3CMR A;  1EW9 A;  5IJS A;  4CXS A;  4CXU A;  2W5V A;  3WAW A;  3UNY A;  1ZEB A;  4ZG6 A;  4KAY A;  3NKR A;  1KHN A;  4LR2 A;  3TG0 A;  3ED4 A;  1EJJ A;  5LRM A;  5TJ3 A;  1EW2 A;  1ANJ A;  4FDI A;  3NKM A;  2W5T A;  4CYR A;  1E33 P;  4LR7 A;  2W8D A;  3M7V A;  1KHJ A;  4ZG7 A;  4GTW A;  4UPI A;  3LXQ A;  1ED8 A;  4FDJ A;  2ZKT A;  5L0E A;  2W5R A;  1AJD A;  3MK2 A;  3T01 A;  1URA A;  3BDG A;  3BDH A;  2W5Q A;  3DPC A;  4UOO A;  1E1Z P;  4UPH A;  1HQA A;  5DLT A;  1ANI A;  3WBH A;  4KAV A;  3TWZ A;  2GSN A;  3OT9 A;  3IGY B;  1KH4 A;  2GA3 A;  4GTX A;  3B5Q A;  4UOP A;  4MY4 A;  2W5W A;  5EGH A;  5IJQ A;  3UN3 A;  4MHX A;  2ANH A;  1E3C P;  4LR9 A;  5EGE A;  5L0K A;  1P49 A;  3MK1 A;  3M8W A;  5AJ9 A;  4LRD A;  1N2L A;  2IUC A;  1ELY A;  1HJK A;  1KH9 A;  4GTZ A;  2W5S A;  1KHL A;  1N2K A;  2GLQ A;  1AUK A;  3WAX A;  4LRE A;  3WAV A;  5C66 A;  4LRB A;  1ZEF A;  4CXK A;  4LRA A;  5GRR A;  1ELZ A;  1E2S P;  3UO0 A;  1EI6 A;  1K7H A;  1O99 A;  3IDD A;  3DYC A;  3M8Y A;  5K4P A;  2VQR A;  4ZGA A;  3UN5 A;  4GTY A;  3NKP A;  1ALK A;  1ELX A;  4UPL A;  2G9Y A;  4NWJ A;  4LRF A;  3Q3Q A;  4LR8 A;  3NVL A; 
#chains in the Genus database with same CATH homology
 1AJB A;  3NKN A;  5KXA A;  1Y6V A;  3NKO A;  3TX0 A;  5L0B A;  1HDH A;  1SHQ A;  3M8Z A;  3IGZ B;  4LRC A;  1EQJ A;  5LIA A;  1FSU A;  3BDG B;  4UOR A;  1ALH A;  3T02 A;  4CYS A;  5INH A;  2IFY A;  2XRG A;  5DLW A;  1O98 A;  3T00 A;  4MIV A;  1KHK A;  4ZG9 A;  4QAX A;  4YR1 A;  2RH6 A;  3E2D A;  1Y7A A;  4B56 A;  5HRT A;  1AJC A;  4KJG A;  4NWX A;  4UPK A;  3SZZ A;  1EW8 A;  2W5X A;  1URB A;  3BDF A;  1ALI A;  1SHN A;  3A52 A;  4KJD A;  3NKQ A;  3WAY A;  4LQY A;  2GSU A;  4KM4 A;  5DLV A;  5GOV A;  1KH7 A;  2IUC B;  5LRN A;  3KD8 A;  4N7T A;  3MK0 A;  4TN0 A;  1KH5 A;  5LQQ A;  1B8J A;  2XR9 A;  1ZED A;  2GSO A;  2X98 A;  2W8S A;  2QZU A;  3SZY A;  1ED9 A;  1ALJ A;  3UN2 A;  1AJA A;  2D1G A;  3CMR A;  1EW9 A;  5IJS A;  4CXS A;  4CXU A;  2W5V A;  3WAW A;  3UNY A;  1ZEB A;  4ZG6 A;  4KAY A;  3NKR A;  1KHN A;  4LR2 A;  3TG0 A;  3ED4 A;  1EJJ A;  5LRM A;  5TJ3 A;  1EW2 A;  1ANJ A;  4FDI A;  3NKM A;  2W5T A;  4CYR A;  1E33 P;  4LR7 A;  2W8D A;  3M7V A;  1KHJ A;  4ZG7 A;  4GTW A;  4UPI A;  3LXQ A;  1ED8 A;  4FDJ A;  2ZKT A;  5L0E A;  2W5R A;  1AJD A;  3MK2 A;  3T01 A;  1URA A;  3BDG A;  3BDH A;  2W5Q A;  3DPC A;  4UOO A;  1E1Z P;  4UPH A;  1HQA A;  5DLT A;  1ANI A;  3WBH A;  4KAV A;  3TWZ A;  2GSN A;  3OT9 A;  3IGY B;  1KH4 A;  2GA3 A;  4GTX A;  3B5Q A;  4UOP A;  4MY4 A;  2W5W A;  5EGH A;  5IJQ A;  3UN3 A;  4MHX A;  2ANH A;  1E3C P;  4LR9 A;  5EGE A;  5L0K A;  1P49 A;  3MK1 A;  3M8W A;  5AJ9 A;  4LRD A;  1N2L A;  2IUC A;  1ELY A;  1HJK A;  1KH9 A;  4GTZ A;  2W5S A;  1KHL A;  1N2K A;  2GLQ A;  1AUK A;  3WAX A;  4LRE A;  3WAV A;  5C66 A;  4LRB A;  1ZEF A;  4CXK A;  4LRA A;  5GRR A;  1ELZ A;  1E2S P;  3UO0 A;  1EI6 A;  1K7H A;  1O99 A;  3IDD A;  3DYC A;  3M8Y A;  5K4P A;  2VQR A;  4ZGA A;  3UN5 A;  4GTY A;  3NKP A;  1ALK A;  1ELX A;  4UPL A;  2G9Y A;  4NWJ A;  4LRF A;  3Q3Q A;  4LR8 A;  3NVL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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