2W8DA

Distinct and essential morphogenic functions for wall- and lipo- teichoic acids in bacillus subtilis
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
Knots found
sequence length
420
structure length
419
Chain Sequence
DSSDVTEVENYMKANYDVPNNVYFGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLNKLAHDNETFYFDNFFHQTGQGKSDAEFMMENSLYPLAQGSVFVNKAQNTLQSVPAILKSKNYTSATFHGNTQTFWNRNEMYKAEGIDKFFDSAYYDMNEENTKNYGMKDKPFFKESMPLLESLPQPFYTKFITLSNHFPFGMDEGDTDFPAGDFGDSVVDNYFQSAHYLDQSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQRVPLFIHAAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLMSGSDILSKEHREVIPFRNGDFISPKYTKISGKYYDTKTGKELDESEVDKSEDSLVKKELEMSDKIINGDLLRFYEPKGFKKVNPSDYDYTKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Distinct and Essential Morphogenic Functions for Wall- and Lipo-Teichoic Acids in Bacillus Subtilis
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Transferase
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE 2
total genus 141
structure length 419
sequence length 420
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 2.7.8.-:
pdb deposition date 2009-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w8dA02
1ANIA 2XRGA 5IJQA 3SZYA 1AJCA 2W5TA 2IUCB 3M7VA 2W5WA 3BDFA 5TJ3A 4CXKA 3UO0A 2W5RA 1SHNA 5EGHA 5L0EA 2X98A 4N7TA 2W8SA 5KXAA 2IFYA 1HQAA 2QZUA 4ZG6A 4B56A 4QAXA 5GOVA 4NWJA 4ZG9A 5LRNA 1E2SP 4CYSA 4LREA 4KJDA 3UN2A 1EJJA 1URAA 3A52A 1ALKA 4KJGA 4LRFA 5INHA 5LRMA 1HDHA 2GA3A 1O98A 3MK2A 4MHXA 1E1ZP 4LR2A 3DPCA 3IDDA 1AJAA 4LR7A 1ED8A 1Y6VA 3B5QA 2W8DA 4UPHA 3OT9A 4LR8A 1N2KA 2D1GA 5GRRA 5LIAA 3UNYA 1EQJA 1ALJA 4ZGAA 1ELZA 4LRAA 4UPLA 3T02A 1EW8A 3UN3A 4UPKA 1ED9A 3NKPA 4NWXA 2ZKTA 3IGYB 2G9YA 5DLWA 2GSUA 3TX0A 4GTWA 3TG0A 4FDIA 3NKNA 2VQRA 3NKMA 2XR9A 5C66A 4CXSA 1P49A 4LQYA 3M8WA 2W5XA 1O99A 4GTZA 3LXQA 3SZZA 3DYCA 4CYRA 4GTXA 3Q3QA 1SHQA 1EI6A 3WBHA 4UPIA 1EW9A 1Y7AA 4LRCA 2GSOA 3BDGB 4FDJA 1AJBA 3T00A 1KHNA 3MK1A 4GTYA 1KH9A 3BDHA 3T01A 3M8ZA 5L0BA 4MY4A 1EW2A 2IUCA 3MK0A 3IGZB 2ANHA 1ELXA 4UORA 3TWZA 5AJ9A 5DLVA 4MIVA 1KHKA 4KM4A 1K7HA 3NVLA 3WAXA 1ZEDA 1AJDA 2GSNA 1ZEFA 3NKRA 1ALIA 4KAYA 4LRBA 1KH4A 1ALHA 1B8JA 2GLQA 4ZG7A 3UN5A 4UOPA 3ED4A 1URBA 5EGEA 4LR9A 1AUKA 3WAVA 5L0KA 5HRTA 3NKQA 2W5SA 4TN0A 1KH5A 1ZEBA 1HJKA 1E3CP 4CXUA 3WAWA 1ANJA 3NKOA 1ELYA 2W5QA 3CMRA 3E2DA 1N2LA 3KD8A 2RH6A 1KHJA 3M8YA 5DLTA 1KH7A 2W5VA 1E33P 3WAYA 4UOOA 4YR1A 1KHLA 5LQQA 3BDGA 4KAVA 4LRDA 5IJSA 5K4PA 1FSUA
chains in the Genus database with same CATH superfamily
1ANIA 2XRGA 5IJQA 3SZYA 1AJCA 2W5TA 2IUCB 3M7VA 2W5WA 3BDFA 5TJ3A 4CXKA 3UO0A 2W5RA 1SHNA 5EGHA 5L0EA 2X98A 4N7TA 2W8SA 5KXAA 2IFYA 1HQAA 2QZUA 4ZG6A 4B56A 4QAXA 5GOVA 4NWJA 4ZG9A 5LRNA 1E2SP 4CYSA 4LREA 4KJDA 3UN2A 1EJJA 1URAA 3A52A 1ALKA 4KJGA 4LRFA 5INHA 5LRMA 1HDHA 2GA3A 1O98A 3MK2A 4MHXA 1E1ZP 4LR2A 3DPCA 3IDDA 1AJAA 4LR7A 1ED8A 1Y6VA 3B5QA 2W8DA 4UPHA 3OT9A 4LR8A 1N2KA 2D1GA 5GRRA 5LIAA 3UNYA 1EQJA 1ALJA 4ZGAA 1ELZA 4LRAA 4UPLA 3T02A 1EW8A 3UN3A 4UPKA 1ED9A 3NKPA 4NWXA 2ZKTA 3IGYB 2G9YA 5DLWA 2GSUA 3TX0A 4GTWA 3TG0A 4FDIA 3NKNA 2VQRA 3NKMA 2XR9A 5C66A 4CXSA 1P49A 4LQYA 3M8WA 2W5XA 1O99A 4GTZA 3LXQA 3SZZA 3DYCA 4CYRA 4GTXA 3Q3QA 1SHQA 1EI6A 3WBHA 4UPIA 1EW9A 1Y7AA 4LRCA 2GSOA 3BDGB 4FDJA 1AJBA 3T00A 1KHNA 3MK1A 4GTYA 1KH9A 3BDHA 3T01A 3M8ZA 5L0BA 4MY4A 1EW2A 2IUCA 3MK0A 3IGZB 2ANHA 1ELXA 4UORA 3TWZA 5AJ9A 5DLVA 4MIVA 1KHKA 4KM4A 1K7HA 3NVLA 3WAXA 1ZEDA 1AJDA 2GSNA 1ZEFA 3NKRA 1ALIA 4KAYA 4LRBA 1KH4A 1ALHA 1B8JA 2GLQA 4ZG7A 3UN5A 4UOPA 3ED4A 1URBA 5EGEA 4LR9A 1AUKA 3WAVA 5L0KA 5HRTA 3NKQA 2W5SA 4TN0A 1KH5A 1ZEBA 1HJKA 1E3CP 4CXUA 3WAWA 1ANJA 3NKOA 1ELYA 2W5QA 3CMRA 3E2DA 1N2LA 3KD8A 2RH6A 1KHJA 3M8YA 5DLTA 1KH7A 2W5VA 1E33P 3WAYA 4UOOA 4YR1A 1KHLA 5LQQA 3BDGA 4KAVA 4LRDA 5IJSA 5K4PA 1FSUA
chains in the Genus database with same CATH topology
1ANIA 2XRGA 5IJQA 3SZYA 1AJCA 2W5TA 2IUCB 3M7VA 2W5WA 3BDFA 5TJ3A 4CXKA 3UO0A 2W5RA 1SHNA 5EGHA 5L0EA 2X98A 4N7TA 2W8SA 5KXAA 2IFYA 1HQAA 2QZUA 4ZG6A 4B56A 4QAXA 5GOVA 4NWJA 4ZG9A 5LRNA 1E2SP 4CYSA 4LREA 4KJDA 3UN2A 1EJJA 1URAA 3A52A 1ALKA 4KJGA 4LRFA 5INHA 5LRMA 1HDHA 2GA3A 1O98A 3MK2A 4MHXA 1E1ZP 4LR2A 3DPCA 3IDDA 1AJAA 4LR7A 1ED8A 1Y6VA 3B5QA 2W8DA 4UPHA 3OT9A 4LR8A 1N2KA 2D1GA 5GRRA 5LIAA 3UNYA 1EQJA 1ALJA 4ZGAA 1ELZA 4LRAA 4UPLA 3T02A 1EW8A 3UN3A 4UPKA 1ED9A 3NKPA 4NWXA 2ZKTA 3IGYB 2G9YA 5DLWA 2GSUA 3TX0A 4GTWA 3TG0A 4FDIA 3NKNA 2VQRA 3NKMA 2XR9A 5C66A 4CXSA 1P49A 4LQYA 3M8WA 2W5XA 1O99A 4GTZA 3LXQA 3SZZA 3DYCA 4CYRA 4GTXA 3Q3QA 1SHQA 1EI6A 3WBHA 4UPIA 1EW9A 1Y7AA 4LRCA 2GSOA 3BDGB 4FDJA 1AJBA 3T00A 1KHNA 3MK1A 4GTYA 1KH9A 3BDHA 3T01A 3M8ZA 5L0BA 4MY4A 1EW2A 2IUCA 3MK0A 3IGZB 2ANHA 1ELXA 4UORA 3TWZA 5AJ9A 5DLVA 4MIVA 1KHKA 4KM4A 1K7HA 3NVLA 3WAXA 1ZEDA 1AJDA 2GSNA 1ZEFA 3NKRA 1ALIA 4KAYA 4LRBA 1KH4A 1ALHA 1B8JA 2GLQA 4ZG7A 3UN5A 4UOPA 3ED4A 1URBA 5EGEA 4LR9A 1AUKA 3WAVA 5L0KA 5HRTA 3NKQA 2W5SA 4TN0A 1KH5A 1ZEBA 1HJKA 1E3CP 4CXUA 3WAWA 1ANJA 3NKOA 1ELYA 2W5QA 3CMRA 3E2DA 1N2LA 3KD8A 2RH6A 1KHJA 3M8YA 5DLTA 1KH7A 2W5VA 1E33P 3WAYA 4UOOA 4YR1A 1KHLA 5LQQA 3BDGA 4KAVA 4LRDA 5IJSA 5K4PA 1FSUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ANI A;  2XRG A;  5IJQ A;  3SZY A;  1AJC A;  2W5T A;  2IUC B;  3M7V A;  2W5W A;  3BDF A;  5TJ3 A;  4CXK A;  3UO0 A;  2W5R A;  1SHN A;  5EGH A;  5L0E A;  2X98 A;  4N7T A;  2W8S A;  5KXA A;  2IFY A;  1HQA A;  2QZU A;  4ZG6 A;  4B56 A;  4QAX A;  5GOV A;  4NWJ A;  4ZG9 A;  5LRN A;  1E2S P;  4CYS A;  4LRE A;  4KJD A;  3UN2 A;  1EJJ A;  1URA A;  3A52 A;  1ALK A;  4KJG A;  4LRF A;  5INH A;  5LRM A;  1HDH A;  2GA3 A;  1O98 A;  3MK2 A;  4MHX A;  1E1Z P;  4LR2 A;  3DPC A;  3IDD A;  1AJA A;  4LR7 A;  1ED8 A;  1Y6V A;  3B5Q A;  2W8D A;  4UPH A;  3OT9 A;  4LR8 A;  1N2K A;  2D1G A;  5GRR A;  5LIA A;  3UNY A;  1EQJ A;  1ALJ A;  4ZGA A;  1ELZ A;  4LRA A;  4UPL A;  3T02 A;  1EW8 A;  3UN3 A;  4UPK A;  1ED9 A;  3NKP A;  4NWX A;  2ZKT A;  3IGY B;  2G9Y A;  5DLW A;  2GSU A;  3TX0 A;  4GTW A;  3TG0 A;  4FDI A;  3NKN A;  2VQR A;  3NKM A;  2XR9 A;  5C66 A;  4CXS A;  1P49 A;  4LQY A;  3M8W A;  2W5X A;  1O99 A;  4GTZ A;  3LXQ A;  3SZZ A;  3DYC A;  4CYR A;  4GTX A;  3Q3Q A;  1SHQ A;  1EI6 A;  3WBH A;  4UPI A;  1EW9 A;  1Y7A A;  4LRC A;  2GSO A;  3BDG B;  4FDJ A;  1AJB A;  3T00 A;  1KHN A;  3MK1 A;  4GTY A;  1KH9 A;  3BDH A;  3T01 A;  3M8Z A;  5L0B A;  4MY4 A;  1EW2 A;  2IUC A;  3MK0 A;  3IGZ B;  2ANH A;  1ELX A;  4UOR A;  3TWZ A;  5AJ9 A;  5DLV A;  4MIV A;  1KHK A;  4KM4 A;  1K7H A;  3NVL A;  3WAX A;  1ZED A;  1AJD A;  2GSN A;  1ZEF A;  3NKR A;  1ALI A;  4KAY A;  4LRB A;  1KH4 A;  1ALH A;  1B8J A;  2GLQ A;  4ZG7 A;  3UN5 A;  4UOP A;  3ED4 A;  1URB A;  5EGE A;  4LR9 A;  1AUK A;  3WAV A;  5L0K A;  5HRT A;  3NKQ A;  2W5S A;  4TN0 A;  1KH5 A;  1ZEB A;  1HJK A;  1E3C P;  4CXU A;  3WAW A;  1ANJ A;  3NKO A;  1ELY A;  2W5Q A;  3CMR A;  3E2D A;  1N2L A;  3KD8 A;  2RH6 A;  1KHJ A;  3M8Y A;  5DLT A;  1KH7 A;  2W5V A;  1E33 P;  3WAY A;  4UOO A;  4YR1 A;  1KHL A;  5LQQ A;  3BDG A;  4KAV A;  4LRD A;  5IJS A;  5K4P A;  1FSU A; 
#chains in the Genus database with same CATH topology
 1ANI A;  2XRG A;  5IJQ A;  3SZY A;  1AJC A;  2W5T A;  2IUC B;  3M7V A;  2W5W A;  3BDF A;  5TJ3 A;  4CXK A;  3UO0 A;  2W5R A;  1SHN A;  5EGH A;  5L0E A;  2X98 A;  4N7T A;  2W8S A;  5KXA A;  2IFY A;  1HQA A;  2QZU A;  4ZG6 A;  4B56 A;  4QAX A;  5GOV A;  4NWJ A;  4ZG9 A;  5LRN A;  1E2S P;  4CYS A;  4LRE A;  4KJD A;  3UN2 A;  1EJJ A;  1URA A;  3A52 A;  1ALK A;  4KJG A;  4LRF A;  5INH A;  5LRM A;  1HDH A;  2GA3 A;  1O98 A;  3MK2 A;  4MHX A;  1E1Z P;  4LR2 A;  3DPC A;  3IDD A;  1AJA A;  4LR7 A;  1ED8 A;  1Y6V A;  3B5Q A;  2W8D A;  4UPH A;  3OT9 A;  4LR8 A;  1N2K A;  2D1G A;  5GRR A;  5LIA A;  3UNY A;  1EQJ A;  1ALJ A;  4ZGA A;  1ELZ A;  4LRA A;  4UPL A;  3T02 A;  1EW8 A;  3UN3 A;  4UPK A;  1ED9 A;  3NKP A;  4NWX A;  2ZKT A;  3IGY B;  2G9Y A;  5DLW A;  2GSU A;  3TX0 A;  4GTW A;  3TG0 A;  4FDI A;  3NKN A;  2VQR A;  3NKM A;  2XR9 A;  5C66 A;  4CXS A;  1P49 A;  4LQY A;  3M8W A;  2W5X A;  1O99 A;  4GTZ A;  3LXQ A;  3SZZ A;  3DYC A;  4CYR A;  4GTX A;  3Q3Q A;  1SHQ A;  1EI6 A;  3WBH A;  4UPI A;  1EW9 A;  1Y7A A;  4LRC A;  2GSO A;  3BDG B;  4FDJ A;  1AJB A;  3T00 A;  1KHN A;  3MK1 A;  4GTY A;  1KH9 A;  3BDH A;  3T01 A;  3M8Z A;  5L0B A;  4MY4 A;  1EW2 A;  2IUC A;  3MK0 A;  3IGZ B;  2ANH A;  1ELX A;  4UOR A;  3TWZ A;  5AJ9 A;  5DLV A;  4MIV A;  1KHK A;  4KM4 A;  1K7H A;  3NVL A;  3WAX A;  1ZED A;  1AJD A;  2GSN A;  1ZEF A;  3NKR A;  1ALI A;  4KAY A;  4LRB A;  1KH4 A;  1ALH A;  1B8J A;  2GLQ A;  4ZG7 A;  3UN5 A;  4UOP A;  3ED4 A;  1URB A;  5EGE A;  4LR9 A;  1AUK A;  3WAV A;  5L0K A;  5HRT A;  3NKQ A;  2W5S A;  4TN0 A;  1KH5 A;  1ZEB A;  1HJK A;  1E3C P;  4CXU A;  3WAW A;  1ANJ A;  3NKO A;  1ELY A;  2W5Q A;  3CMR A;  3E2D A;  1N2L A;  3KD8 A;  2RH6 A;  1KHJ A;  3M8Y A;  5DLT A;  1KH7 A;  2W5V A;  1E33 P;  3WAY A;  4UOO A;  4YR1 A;  1KHL A;  5LQQ A;  3BDG A;  4KAV A;  4LRD A;  5IJS A;  5K4P A;  1FSU A; 
#chains in the Genus database with same CATH homology
 1ANI A;  2XRG A;  5IJQ A;  3SZY A;  1AJC A;  2W5T A;  2IUC B;  3M7V A;  2W5W A;  3BDF A;  5TJ3 A;  4CXK A;  3UO0 A;  2W5R A;  1SHN A;  5EGH A;  5L0E A;  2X98 A;  4N7T A;  2W8S A;  5KXA A;  2IFY A;  1HQA A;  2QZU A;  4ZG6 A;  4B56 A;  4QAX A;  5GOV A;  4NWJ A;  4ZG9 A;  5LRN A;  1E2S P;  4CYS A;  4LRE A;  4KJD A;  3UN2 A;  1EJJ A;  1URA A;  3A52 A;  1ALK A;  4KJG A;  4LRF A;  5INH A;  5LRM A;  1HDH A;  2GA3 A;  1O98 A;  3MK2 A;  4MHX A;  1E1Z P;  4LR2 A;  3DPC A;  3IDD A;  1AJA A;  4LR7 A;  1ED8 A;  1Y6V A;  3B5Q A;  2W8D A;  4UPH A;  3OT9 A;  4LR8 A;  1N2K A;  2D1G A;  5GRR A;  5LIA A;  3UNY A;  1EQJ A;  1ALJ A;  4ZGA A;  1ELZ A;  4LRA A;  4UPL A;  3T02 A;  1EW8 A;  3UN3 A;  4UPK A;  1ED9 A;  3NKP A;  4NWX A;  2ZKT A;  3IGY B;  2G9Y A;  5DLW A;  2GSU A;  3TX0 A;  4GTW A;  3TG0 A;  4FDI A;  3NKN A;  2VQR A;  3NKM A;  2XR9 A;  5C66 A;  4CXS A;  1P49 A;  4LQY A;  3M8W A;  2W5X A;  1O99 A;  4GTZ A;  3LXQ A;  3SZZ A;  3DYC A;  4CYR A;  4GTX A;  3Q3Q A;  1SHQ A;  1EI6 A;  3WBH A;  4UPI A;  1EW9 A;  1Y7A A;  4LRC A;  2GSO A;  3BDG B;  4FDJ A;  1AJB A;  3T00 A;  1KHN A;  3MK1 A;  4GTY A;  1KH9 A;  3BDH A;  3T01 A;  3M8Z A;  5L0B A;  4MY4 A;  1EW2 A;  2IUC A;  3MK0 A;  3IGZ B;  2ANH A;  1ELX A;  4UOR A;  3TWZ A;  5AJ9 A;  5DLV A;  4MIV A;  1KHK A;  4KM4 A;  1K7H A;  3NVL A;  3WAX A;  1ZED A;  1AJD A;  2GSN A;  1ZEF A;  3NKR A;  1ALI A;  4KAY A;  4LRB A;  1KH4 A;  1ALH A;  1B8J A;  2GLQ A;  4ZG7 A;  3UN5 A;  4UOP A;  3ED4 A;  1URB A;  5EGE A;  4LR9 A;  1AUK A;  3WAV A;  5L0K A;  5HRT A;  3NKQ A;  2W5S A;  4TN0 A;  1KH5 A;  1ZEB A;  1HJK A;  1E3C P;  4CXU A;  3WAW A;  1ANJ A;  3NKO A;  1ELY A;  2W5Q A;  3CMR A;  3E2D A;  1N2L A;  3KD8 A;  2RH6 A;  1KHJ A;  3M8Y A;  5DLT A;  1KH7 A;  2W5V A;  1E33 P;  3WAY A;  4UOO A;  4YR1 A;  1KHL A;  5LQQ A;  3BDG A;  4KAV A;  4LRD A;  5IJS A;  5K4P A;  1FSU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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