2W8DA

Distinct and essential morphogenic functions for wall- and lipo- teichoic acids in bacillus subtilis
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
Knots found
sequence length
420
structure length
419
Chain Sequence
DSSDVTEVENYMKANYDVPNNVYFGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLNKLAHDNETFYFDNFFHQTGQGKSDAEFMMENSLYPLAQGSVFVNKAQNTLQSVPAILKSKNYTSATFHGNTQTFWNRNEMYKAEGIDKFFDSAYYDMNEENTKNYGMKDKPFFKESMPLLESLPQPFYTKFITLSNHFPFGMDEGDTDFPAGDFGDSVVDNYFQSAHYLDQSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQRVPLFIHAAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLMSGSDILSKEHREVIPFRNGDFISPKYTKISGKYYDTKTGKELDESEVDKSEDSLVKKELEMSDKIINGDLLRFYEPKGFKKVNPSDYDYTKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Distinct and Essential Morphogenic Functions for Wall- and Lipo-Teichoic Acids in Bacillus Subtilis
pubmed doi rcsb
molecule tags Transferase
source organism Bacillus subtilis
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE 2
total genus 141
structure length 419
sequence length 420
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 2.7.8.-:
pdb deposition date 2009-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w8dA02
1ALIA 1B8JA 3MK2A 2ANHA 4CYSA 2W5RA 1EI6A 1O98A 4KJGA 3NKRA 4GTYA 1KH9A 3WAWA 2W5VA 4LRBA 1K7HA 1N2LA 1KHNA 2W5SA 3BDGB 4LRDA 3DYCA 2W5TA 4ZG6A 4MHXA 4N7TA 1EJJA 2G9YA 3OT9A 3T02A 3WAYA 4LR2A 2XRGA 4MY4A 1URAA 3NVLA 3TG0A 5L0EA 3B5QA 3DPCA 1URBA 1KHLA 4MIVA 5EGEA 1ELYA 5IJQA 1P49A 4FDJA 5LIAA 4KAVA 2QZUA 1SHQA 5IJSA 3NKPA 1ED8A 2W8DA 1E3CP 3UN5A 1EW9A 1EW8A 1E33P 2D1GA 1AUKA 3TWZA 3SZZA 2W5QA 4LQYA 3WBHA 3ED4A 2VQRA 3NKNA 4LRFA 2W8SA 1ELZA 4KM4A 3Q3QA 3MK1A 5KXAA 4LRAA 5L0KA 5LRNA 1KH4A 5DLWA 3BDFA 3M8WA 2W5XA 1HJKA 3IGYB 1HDHA 5LQQA 2RH6A 4QAXA 4ZG9A 2GA3A 4TN0A 4FDIA 4GTZA 4UPKA 1ALHA 3SZYA 5DLTA 4CYRA 4YR1A 4LREA 4UPLA 3KD8A 2GLQA 5GOVA 4UOPA 5GRRA 2XR9A 4CXKA 1KHKA 2GSUA 3IGZB 4GTWA 4UORA 5C66A 1ALKA 1ZEBA 3T00A 4ZGAA 1AJBA 5L0BA 3T01A 1N2KA 4NWXA 5TJ3A 3UN3A 3BDHA 3UO0A 1ANJA 1AJDA 3NKOA 2ZKTA 5AJ9A 1ZEDA 4B56A 1KH5A 1E1ZP 2GSNA 3M8YA 3IDDA 1EW2A 1Y7AA 3TX0A 1ALJA 5HRTA 4KAYA 1AJAA 3NKMA 1KH7A 4UPIA 4GTXA 4UOOA 1ED9A 5INHA 3WAXA 1E2SP 1SHNA 1AJCA 3MK0A 3WAVA 1ELXA 1EQJA 1FSUA 2IUCA 3A52A 4NWJA 4LR8A 4UPHA 4CXSA 5DLVA 3NKQA 1KHJA 3UN2A 5K4PA 5LRMA 1ANIA 2W5WA 5EGHA 3LXQA 3M7VA 2X98A 4ZG7A 1ZEFA 4LRCA 2GSOA 2IFYA 3BDGA 3E2DA 3CMRA 2IUCB 4CXUA 1Y6VA 1O99A 4LR7A 4LR9A 1HQAA 3UNYA 4KJDA 3M8ZA
chains in the Genus database with same CATH superfamily
1ALIA 1B8JA 3MK2A 2ANHA 4CYSA 2W5RA 1EI6A 1O98A 4KJGA 3NKRA 4GTYA 1KH9A 3WAWA 2W5VA 4LRBA 1K7HA 1N2LA 1KHNA 2W5SA 3BDGB 4LRDA 3DYCA 2W5TA 4ZG6A 4MHXA 4N7TA 1EJJA 2G9YA 3OT9A 3T02A 3WAYA 4LR2A 2XRGA 4MY4A 1URAA 3NVLA 3TG0A 5L0EA 3B5QA 3DPCA 1URBA 1KHLA 4MIVA 5EGEA 1ELYA 5IJQA 1P49A 4FDJA 5LIAA 4KAVA 2QZUA 1SHQA 5IJSA 3NKPA 1ED8A 2W8DA 1E3CP 3UN5A 1EW9A 1EW8A 1E33P 2D1GA 1AUKA 3TWZA 3SZZA 2W5QA 4LQYA 3WBHA 3ED4A 2VQRA 3NKNA 4LRFA 2W8SA 1ELZA 4KM4A 3Q3QA 3MK1A 5KXAA 4LRAA 5L0KA 5LRNA 1KH4A 5DLWA 3BDFA 3M8WA 2W5XA 1HJKA 3IGYB 1HDHA 5LQQA 2RH6A 4QAXA 4ZG9A 2GA3A 4TN0A 4FDIA 4GTZA 4UPKA 1ALHA 3SZYA 5DLTA 4CYRA 4YR1A 4LREA 4UPLA 3KD8A 2GLQA 5GOVA 4UOPA 5GRRA 2XR9A 4CXKA 1KHKA 2GSUA 3IGZB 4GTWA 4UORA 5C66A 1ALKA 1ZEBA 3T00A 4ZGAA 1AJBA 5L0BA 3T01A 1N2KA 4NWXA 5TJ3A 3UN3A 3BDHA 3UO0A 1ANJA 1AJDA 3NKOA 2ZKTA 5AJ9A 1ZEDA 4B56A 1KH5A 1E1ZP 2GSNA 3M8YA 3IDDA 1EW2A 1Y7AA 3TX0A 1ALJA 5HRTA 4KAYA 1AJAA 3NKMA 1KH7A 4UPIA 4GTXA 4UOOA 1ED9A 5INHA 3WAXA 1E2SP 1SHNA 1AJCA 3MK0A 3WAVA 1ELXA 1EQJA 1FSUA 2IUCA 3A52A 4NWJA 4LR8A 4UPHA 4CXSA 5DLVA 3NKQA 1KHJA 3UN2A 5K4PA 5LRMA 1ANIA 2W5WA 5EGHA 3LXQA 3M7VA 2X98A 4ZG7A 1ZEFA 4LRCA 2GSOA 2IFYA 3BDGA 3E2DA 3CMRA 2IUCB 4CXUA 1Y6VA 1O99A 4LR7A 4LR9A 1HQAA 3UNYA 4KJDA 3M8ZA
chains in the Genus database with same CATH topology
1ALIA 1B8JA 3MK2A 2ANHA 4CYSA 2W5RA 1EI6A 1O98A 4KJGA 3NKRA 4GTYA 1KH9A 3WAWA 2W5VA 4LRBA 1K7HA 1N2LA 1KHNA 2W5SA 3BDGB 4LRDA 3DYCA 2W5TA 4ZG6A 4MHXA 4N7TA 1EJJA 2G9YA 3OT9A 3T02A 3WAYA 4LR2A 2XRGA 4MY4A 1URAA 3NVLA 3TG0A 5L0EA 3B5QA 3DPCA 1URBA 1KHLA 4MIVA 5EGEA 1ELYA 5IJQA 1P49A 4FDJA 5LIAA 4KAVA 2QZUA 1SHQA 5IJSA 3NKPA 1ED8A 2W8DA 1E3CP 3UN5A 1EW9A 1EW8A 1E33P 2D1GA 1AUKA 3TWZA 3SZZA 2W5QA 4LQYA 3WBHA 3ED4A 2VQRA 3NKNA 4LRFA 2W8SA 1ELZA 4KM4A 3Q3QA 3MK1A 5KXAA 4LRAA 5L0KA 5LRNA 1KH4A 5DLWA 3BDFA 3M8WA 2W5XA 1HJKA 3IGYB 1HDHA 5LQQA 2RH6A 4QAXA 4ZG9A 2GA3A 4TN0A 4FDIA 4GTZA 4UPKA 1ALHA 3SZYA 5DLTA 4CYRA 4YR1A 4LREA 4UPLA 3KD8A 2GLQA 5GOVA 4UOPA 5GRRA 2XR9A 4CXKA 1KHKA 2GSUA 3IGZB 4GTWA 4UORA 5C66A 1ALKA 1ZEBA 3T00A 4ZGAA 1AJBA 5L0BA 3T01A 1N2KA 4NWXA 5TJ3A 3UN3A 3BDHA 3UO0A 1ANJA 1AJDA 3NKOA 2ZKTA 5AJ9A 1ZEDA 4B56A 1KH5A 1E1ZP 2GSNA 3M8YA 3IDDA 1EW2A 1Y7AA 3TX0A 1ALJA 5HRTA 4KAYA 1AJAA 3NKMA 1KH7A 4UPIA 4GTXA 4UOOA 1ED9A 5INHA 3WAXA 1E2SP 1SHNA 1AJCA 3MK0A 3WAVA 1ELXA 1EQJA 1FSUA 2IUCA 3A52A 4NWJA 4LR8A 4UPHA 4CXSA 5DLVA 3NKQA 1KHJA 3UN2A 5K4PA 5LRMA 1ANIA 2W5WA 5EGHA 3LXQA 3M7VA 2X98A 4ZG7A 1ZEFA 4LRCA 2GSOA 2IFYA 3BDGA 3E2DA 3CMRA 2IUCB 4CXUA 1Y6VA 1O99A 4LR7A 4LR9A 1HQAA 3UNYA 4KJDA 3M8ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ALI A;  1B8J A;  3MK2 A;  2ANH A;  4CYS A;  2W5R A;  1EI6 A;  1O98 A;  4KJG A;  3NKR A;  4GTY A;  1KH9 A;  3WAW A;  2W5V A;  4LRB A;  1K7H A;  1N2L A;  1KHN A;  2W5S A;  3BDG B;  4LRD A;  3DYC A;  2W5T A;  4ZG6 A;  4MHX A;  4N7T A;  1EJJ A;  2G9Y A;  3OT9 A;  3T02 A;  3WAY A;  4LR2 A;  2XRG A;  4MY4 A;  1URA A;  3NVL A;  3TG0 A;  5L0E A;  3B5Q A;  3DPC A;  1URB A;  1KHL A;  4MIV A;  5EGE A;  1ELY A;  5IJQ A;  1P49 A;  4FDJ A;  5LIA A;  4KAV A;  2QZU A;  1SHQ A;  5IJS A;  3NKP A;  1ED8 A;  2W8D A;  1E3C P;  3UN5 A;  1EW9 A;  1EW8 A;  1E33 P;  2D1G A;  1AUK A;  3TWZ A;  3SZZ A;  2W5Q A;  4LQY A;  3WBH A;  3ED4 A;  2VQR A;  3NKN A;  4LRF A;  2W8S A;  1ELZ A;  4KM4 A;  3Q3Q A;  3MK1 A;  5KXA A;  4LRA A;  5L0K A;  5LRN A;  1KH4 A;  5DLW A;  3BDF A;  3M8W A;  2W5X A;  1HJK A;  3IGY B;  1HDH A;  5LQQ A;  2RH6 A;  4QAX A;  4ZG9 A;  2GA3 A;  4TN0 A;  4FDI A;  4GTZ A;  4UPK A;  1ALH A;  3SZY A;  5DLT A;  4CYR A;  4YR1 A;  4LRE A;  4UPL A;  3KD8 A;  2GLQ A;  5GOV A;  4UOP A;  5GRR A;  2XR9 A;  4CXK A;  1KHK A;  2GSU A;  3IGZ B;  4GTW A;  4UOR A;  5C66 A;  1ALK A;  1ZEB A;  3T00 A;  4ZGA A;  1AJB A;  5L0B A;  3T01 A;  1N2K A;  4NWX A;  5TJ3 A;  3UN3 A;  3BDH A;  3UO0 A;  1ANJ A;  1AJD A;  3NKO A;  2ZKT A;  5AJ9 A;  1ZED A;  4B56 A;  1KH5 A;  1E1Z P;  2GSN A;  3M8Y A;  3IDD A;  1EW2 A;  1Y7A A;  3TX0 A;  1ALJ A;  5HRT A;  4KAY A;  1AJA A;  3NKM A;  1KH7 A;  4UPI A;  4GTX A;  4UOO A;  1ED9 A;  5INH A;  3WAX A;  1E2S P;  1SHN A;  1AJC A;  3MK0 A;  3WAV A;  1ELX A;  1EQJ A;  1FSU A;  2IUC A;  3A52 A;  4NWJ A;  4LR8 A;  4UPH A;  4CXS A;  5DLV A;  3NKQ A;  1KHJ A;  3UN2 A;  5K4P A;  5LRM A;  1ANI A;  2W5W A;  5EGH A;  3LXQ A;  3M7V A;  2X98 A;  4ZG7 A;  1ZEF A;  4LRC A;  2GSO A;  2IFY A;  3BDG A;  3E2D A;  3CMR A;  2IUC B;  4CXU A;  1Y6V A;  1O99 A;  4LR7 A;  4LR9 A;  1HQA A;  3UNY A;  4KJD A;  3M8Z A; 
#chains in the Genus database with same CATH topology
 1ALI A;  1B8J A;  3MK2 A;  2ANH A;  4CYS A;  2W5R A;  1EI6 A;  1O98 A;  4KJG A;  3NKR A;  4GTY A;  1KH9 A;  3WAW A;  2W5V A;  4LRB A;  1K7H A;  1N2L A;  1KHN A;  2W5S A;  3BDG B;  4LRD A;  3DYC A;  2W5T A;  4ZG6 A;  4MHX A;  4N7T A;  1EJJ A;  2G9Y A;  3OT9 A;  3T02 A;  3WAY A;  4LR2 A;  2XRG A;  4MY4 A;  1URA A;  3NVL A;  3TG0 A;  5L0E A;  3B5Q A;  3DPC A;  1URB A;  1KHL A;  4MIV A;  5EGE A;  1ELY A;  5IJQ A;  1P49 A;  4FDJ A;  5LIA A;  4KAV A;  2QZU A;  1SHQ A;  5IJS A;  3NKP A;  1ED8 A;  2W8D A;  1E3C P;  3UN5 A;  1EW9 A;  1EW8 A;  1E33 P;  2D1G A;  1AUK A;  3TWZ A;  3SZZ A;  2W5Q A;  4LQY A;  3WBH A;  3ED4 A;  2VQR A;  3NKN A;  4LRF A;  2W8S A;  1ELZ A;  4KM4 A;  3Q3Q A;  3MK1 A;  5KXA A;  4LRA A;  5L0K A;  5LRN A;  1KH4 A;  5DLW A;  3BDF A;  3M8W A;  2W5X A;  1HJK A;  3IGY B;  1HDH A;  5LQQ A;  2RH6 A;  4QAX A;  4ZG9 A;  2GA3 A;  4TN0 A;  4FDI A;  4GTZ A;  4UPK A;  1ALH A;  3SZY A;  5DLT A;  4CYR A;  4YR1 A;  4LRE A;  4UPL A;  3KD8 A;  2GLQ A;  5GOV A;  4UOP A;  5GRR A;  2XR9 A;  4CXK A;  1KHK A;  2GSU A;  3IGZ B;  4GTW A;  4UOR A;  5C66 A;  1ALK A;  1ZEB A;  3T00 A;  4ZGA A;  1AJB A;  5L0B A;  3T01 A;  1N2K A;  4NWX A;  5TJ3 A;  3UN3 A;  3BDH A;  3UO0 A;  1ANJ A;  1AJD A;  3NKO A;  2ZKT A;  5AJ9 A;  1ZED A;  4B56 A;  1KH5 A;  1E1Z P;  2GSN A;  3M8Y A;  3IDD A;  1EW2 A;  1Y7A A;  3TX0 A;  1ALJ A;  5HRT A;  4KAY A;  1AJA A;  3NKM A;  1KH7 A;  4UPI A;  4GTX A;  4UOO A;  1ED9 A;  5INH A;  3WAX A;  1E2S P;  1SHN A;  1AJC A;  3MK0 A;  3WAV A;  1ELX A;  1EQJ A;  1FSU A;  2IUC A;  3A52 A;  4NWJ A;  4LR8 A;  4UPH A;  4CXS A;  5DLV A;  3NKQ A;  1KHJ A;  3UN2 A;  5K4P A;  5LRM A;  1ANI A;  2W5W A;  5EGH A;  3LXQ A;  3M7V A;  2X98 A;  4ZG7 A;  1ZEF A;  4LRC A;  2GSO A;  2IFY A;  3BDG A;  3E2D A;  3CMR A;  2IUC B;  4CXU A;  1Y6V A;  1O99 A;  4LR7 A;  4LR9 A;  1HQA A;  3UNY A;  4KJD A;  3M8Z A; 
#chains in the Genus database with same CATH homology
 1ALI A;  1B8J A;  3MK2 A;  2ANH A;  4CYS A;  2W5R A;  1EI6 A;  1O98 A;  4KJG A;  3NKR A;  4GTY A;  1KH9 A;  3WAW A;  2W5V A;  4LRB A;  1K7H A;  1N2L A;  1KHN A;  2W5S A;  3BDG B;  4LRD A;  3DYC A;  2W5T A;  4ZG6 A;  4MHX A;  4N7T A;  1EJJ A;  2G9Y A;  3OT9 A;  3T02 A;  3WAY A;  4LR2 A;  2XRG A;  4MY4 A;  1URA A;  3NVL A;  3TG0 A;  5L0E A;  3B5Q A;  3DPC A;  1URB A;  1KHL A;  4MIV A;  5EGE A;  1ELY A;  5IJQ A;  1P49 A;  4FDJ A;  5LIA A;  4KAV A;  2QZU A;  1SHQ A;  5IJS A;  3NKP A;  1ED8 A;  2W8D A;  1E3C P;  3UN5 A;  1EW9 A;  1EW8 A;  1E33 P;  2D1G A;  1AUK A;  3TWZ A;  3SZZ A;  2W5Q A;  4LQY A;  3WBH A;  3ED4 A;  2VQR A;  3NKN A;  4LRF A;  2W8S A;  1ELZ A;  4KM4 A;  3Q3Q A;  3MK1 A;  5KXA A;  4LRA A;  5L0K A;  5LRN A;  1KH4 A;  5DLW A;  3BDF A;  3M8W A;  2W5X A;  1HJK A;  3IGY B;  1HDH A;  5LQQ A;  2RH6 A;  4QAX A;  4ZG9 A;  2GA3 A;  4TN0 A;  4FDI A;  4GTZ A;  4UPK A;  1ALH A;  3SZY A;  5DLT A;  4CYR A;  4YR1 A;  4LRE A;  4UPL A;  3KD8 A;  2GLQ A;  5GOV A;  4UOP A;  5GRR A;  2XR9 A;  4CXK A;  1KHK A;  2GSU A;  3IGZ B;  4GTW A;  4UOR A;  5C66 A;  1ALK A;  1ZEB A;  3T00 A;  4ZGA A;  1AJB A;  5L0B A;  3T01 A;  1N2K A;  4NWX A;  5TJ3 A;  3UN3 A;  3BDH A;  3UO0 A;  1ANJ A;  1AJD A;  3NKO A;  2ZKT A;  5AJ9 A;  1ZED A;  4B56 A;  1KH5 A;  1E1Z P;  2GSN A;  3M8Y A;  3IDD A;  1EW2 A;  1Y7A A;  3TX0 A;  1ALJ A;  5HRT A;  4KAY A;  1AJA A;  3NKM A;  1KH7 A;  4UPI A;  4GTX A;  4UOO A;  1ED9 A;  5INH A;  3WAX A;  1E2S P;  1SHN A;  1AJC A;  3MK0 A;  3WAV A;  1ELX A;  1EQJ A;  1FSU A;  2IUC A;  3A52 A;  4NWJ A;  4LR8 A;  4UPH A;  4CXS A;  5DLV A;  3NKQ A;  1KHJ A;  3UN2 A;  5K4P A;  5LRM A;  1ANI A;  2W5W A;  5EGH A;  3LXQ A;  3M7V A;  2X98 A;  4ZG7 A;  1ZEF A;  4LRC A;  2GSO A;  2IFY A;  3BDG A;  3E2D A;  3CMR A;  2IUC B;  4CXU A;  1Y6V A;  1O99 A;  4LR7 A;  4LR9 A;  1HQA A;  3UNY A;  4KJD A;  3M8Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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