3MK2A

Placental alkaline phosphatase complexed with phe
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
Knots found
sequence length
481
structure length
480
Chain Sequence
b'IIPVEEENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPEIPLAMDRFPYVALSKTYNVDKHVPDGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISNMDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAKRQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRDSTLDPSLMEMTEAALRLLSRNPRGFFLFVEGGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKAYTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFAACLEPYTACDLAPPAG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Refined structures of placental alkaline phosphatase show a consistent pattern of interactions at the peripheral site.
pubmed doi rcsb
molecule keywords Alkaline phosphatase, placental type
molecule tags Hydrolase
total genus 184
structure length 480
sequence length 481
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2010-04-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3mk2A00
3NVLA 3NKOA 4GTWA 5L0BA 1ALKA 1URBA 5IJSA 1E3CP 3Q3QA 3CMRA 3A52A 2GLQA 1ELXA 1E2SP 2RH6A 2QZUA 2D1GA 2ZKTA 4UOPA 4UORA 4ZG7A 5DLVA 1EQJA 2W5QA 1AJAA 4NWXA 2GSNA 4YR1A 1HQAA 3IDDA 5TJ3A 4LREA 5DLTA 4LRDA 4LR8A 1N2LA 5INHA 1E33P 1ALHA 3BDFA 3MK0A 2GSOA 1URAA 4LRCA 3E2DA 2W5TA 3WAYA 3NKNA 4ZG9A 4LQYA 3BDGA 1KHKA 5KXAA 3BDGB 3BDHA 2XR9A 3T01A 3WBHA 5LIAA 1Y6VA 3UN3A 4LRFA 4LR9A 2GA3A 1AJDA 5K4PA 4UPIA 3TWZA 3MK2A 4CYRA 3ED4A 1N2KA 3M7VA 2W5RA 3IGZB 4MY4A 3NKMA 4MHXA 2IUCA 2IUCB 1KHNA 1ANIA 2W8DA 1AJCA 1EJJA 3M8WA 4NWJA 5EGEA 1O99A 5EGHA 1KH4A 4KAVA 4LR7A 1ED9A 4LRAA 1ALJA 2GSUA 3WAWA 1AUKA 1ED8A 2W5VA 4GTZA 2XRGA 1EW2A 1KHLA 1KH5A 3WAVA 3NKPA 3T00A 3WAXA 4GTXA 4FDIA 1ALIA 3OT9A 4KJDA 4KJGA 1HDHA 3DYCA 5LRNA 5L0KA 2W8SA 4MIVA 4UPHA 1E1ZP 2X98A 3DPCA 3KD8A 3LXQA 3UNYA 4KAYA 3MK1A 3UN5A 3IGYB 3B5QA 4FDJA 1ELZA 4LRBA 4CXUA 4UOOA 1Y7AA 1ZEBA 3M8ZA 1K7HA 5LQQA 1SHQA 4GTYA 2W5WA 1SHNA 1ANJA 2ANHA 1FSUA 4B56A 1ZEDA 4QAXA 5L0EA 1KH7A 2VQRA 4CXKA 3T02A 3TG0A 4ZG6A 4ZGAA 5GOVA 5GRRA 4N7TA 1HJKA 1EW8A 2G9YA 3SZYA 3M8YA 3UO0A 5C66A 1P49A 2W5XA 2IFYA 1EI6A 5DLWA 1ZEFA 2W5SA 3NKRA 5HRTA 1KHJA 4CYSA 4CXSA 4UPLA 1ELYA 3NKQA 4LR2A 1AJBA 1O98A 5AJ9A 5LRMA 1EW9A 1B8JA 4TN0A 5IJQA 4UPKA 3SZZA 3UN2A 4KM4A 3TX0A 1KH9A
chains in the Genus database with same CATH superfamily
3NVLA 3NKOA 4GTWA 5L0BA 1ALKA 1URBA 5IJSA 1E3CP 3Q3QA 3CMRA 3A52A 2GLQA 1ELXA 1E2SP 2RH6A 2QZUA 2D1GA 2ZKTA 4UOPA 4UORA 4ZG7A 5DLVA 1EQJA 2W5QA 1AJAA 4NWXA 2GSNA 4YR1A 1HQAA 3IDDA 5TJ3A 4LREA 5DLTA 4LRDA 4LR8A 1N2LA 5INHA 1E33P 1ALHA 3BDFA 3MK0A 2GSOA 1URAA 4LRCA 3E2DA 2W5TA 3WAYA 3NKNA 4ZG9A 4LQYA 3BDGA 1KHKA 5KXAA 3BDGB 3BDHA 2XR9A 3T01A 3WBHA 5LIAA 1Y6VA 3UN3A 4LRFA 4LR9A 2GA3A 1AJDA 5K4PA 4UPIA 3TWZA 3MK2A 4CYRA 3ED4A 1N2KA 3M7VA 2W5RA 3IGZB 4MY4A 3NKMA 4MHXA 2IUCA 2IUCB 1KHNA 1ANIA 2W8DA 1AJCA 1EJJA 3M8WA 4NWJA 5EGEA 1O99A 5EGHA 1KH4A 4KAVA 4LR7A 1ED9A 4LRAA 1ALJA 2GSUA 3WAWA 1AUKA 1ED8A 2W5VA 4GTZA 2XRGA 1EW2A 1KHLA 1KH5A 3WAVA 3NKPA 3T00A 3WAXA 4GTXA 4FDIA 1ALIA 3OT9A 4KJDA 4KJGA 1HDHA 3DYCA 5LRNA 5L0KA 2W8SA 4MIVA 4UPHA 1E1ZP 2X98A 3DPCA 3KD8A 3LXQA 3UNYA 4KAYA 3MK1A 3UN5A 3IGYB 3B5QA 4FDJA 1ELZA 4LRBA 4CXUA 4UOOA 1Y7AA 1ZEBA 3M8ZA 1K7HA 5LQQA 1SHQA 4GTYA 2W5WA 1SHNA 1ANJA 2ANHA 1FSUA 4B56A 1ZEDA 4QAXA 5L0EA 1KH7A 2VQRA 4CXKA 3T02A 3TG0A 4ZG6A 4ZGAA 5GOVA 5GRRA 4N7TA 1HJKA 1EW8A 2G9YA 3SZYA 3M8YA 3UO0A 5C66A 1P49A 2W5XA 2IFYA 1EI6A 5DLWA 1ZEFA 2W5SA 3NKRA 5HRTA 1KHJA 4CYSA 4CXSA 4UPLA 1ELYA 3NKQA 4LR2A 1AJBA 1O98A 5AJ9A 5LRMA 1EW9A 1B8JA 4TN0A 5IJQA 4UPKA 3SZZA 3UN2A 4KM4A 3TX0A 1KH9A
chains in the Genus database with same CATH topology
3NVLA 3NKOA 4GTWA 5L0BA 1ALKA 1URBA 5IJSA 1E3CP 3Q3QA 3CMRA 3A52A 2GLQA 1ELXA 1E2SP 2RH6A 2QZUA 2D1GA 2ZKTA 4UOPA 4UORA 4ZG7A 5DLVA 1EQJA 2W5QA 1AJAA 4NWXA 2GSNA 4YR1A 1HQAA 3IDDA 5TJ3A 4LREA 5DLTA 4LRDA 4LR8A 1N2LA 5INHA 1E33P 1ALHA 3BDFA 3MK0A 2GSOA 1URAA 4LRCA 3E2DA 2W5TA 3WAYA 3NKNA 4ZG9A 4LQYA 3BDGA 1KHKA 5KXAA 3BDGB 3BDHA 2XR9A 3T01A 3WBHA 5LIAA 1Y6VA 3UN3A 4LRFA 4LR9A 2GA3A 1AJDA 5K4PA 4UPIA 3TWZA 3MK2A 4CYRA 3ED4A 1N2KA 3M7VA 2W5RA 3IGZB 4MY4A 3NKMA 4MHXA 2IUCA 2IUCB 1KHNA 1ANIA 2W8DA 1AJCA 1EJJA 3M8WA 4NWJA 5EGEA 1O99A 5EGHA 1KH4A 4KAVA 4LR7A 1ED9A 4LRAA 1ALJA 2GSUA 3WAWA 1AUKA 1ED8A 2W5VA 4GTZA 2XRGA 1EW2A 1KHLA 1KH5A 3WAVA 3NKPA 3T00A 3WAXA 4GTXA 4FDIA 1ALIA 3OT9A 4KJDA 4KJGA 1HDHA 3DYCA 5LRNA 5L0KA 2W8SA 4MIVA 4UPHA 1E1ZP 2X98A 3DPCA 3KD8A 3LXQA 3UNYA 4KAYA 3MK1A 3UN5A 3IGYB 3B5QA 4FDJA 1ELZA 4LRBA 4CXUA 4UOOA 1Y7AA 1ZEBA 3M8ZA 1K7HA 5LQQA 1SHQA 4GTYA 2W5WA 1SHNA 1ANJA 2ANHA 1FSUA 4B56A 1ZEDA 4QAXA 5L0EA 1KH7A 2VQRA 4CXKA 3T02A 3TG0A 4ZG6A 4ZGAA 5GOVA 5GRRA 4N7TA 1HJKA 1EW8A 2G9YA 3SZYA 3M8YA 3UO0A 5C66A 1P49A 2W5XA 2IFYA 1EI6A 5DLWA 1ZEFA 2W5SA 3NKRA 5HRTA 1KHJA 4CYSA 4CXSA 4UPLA 1ELYA 3NKQA 4LR2A 1AJBA 1O98A 5AJ9A 5LRMA 1EW9A 1B8JA 4TN0A 5IJQA 4UPKA 3SZZA 3UN2A 4KM4A 3TX0A 1KH9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NVL A;  3NKO A;  4GTW A;  5L0B A;  1ALK A;  1URB A;  5IJS A;  1E3C P;  3Q3Q A;  3CMR A;  3A52 A;  2GLQ A;  1ELX A;  1E2S P;  2RH6 A;  2QZU A;  2D1G A;  2ZKT A;  4UOP A;  4UOR A;  4ZG7 A;  5DLV A;  1EQJ A;  2W5Q A;  1AJA A;  4NWX A;  2GSN A;  4YR1 A;  1HQA A;  3IDD A;  5TJ3 A;  4LRE A;  5DLT A;  4LRD A;  4LR8 A;  1N2L A;  5INH A;  1E33 P;  1ALH A;  3BDF A;  3MK0 A;  2GSO A;  1URA A;  4LRC A;  3E2D A;  2W5T A;  3WAY A;  3NKN A;  4ZG9 A;  4LQY A;  3BDG A;  1KHK A;  5KXA A;  3BDG B;  3BDH A;  2XR9 A;  3T01 A;  3WBH A;  5LIA A;  1Y6V A;  3UN3 A;  4LRF A;  4LR9 A;  2GA3 A;  1AJD A;  5K4P A;  4UPI A;  3TWZ A;  3MK2 A;  4CYR A;  3ED4 A;  1N2K A;  3M7V A;  2W5R A;  3IGZ B;  4MY4 A;  3NKM A;  4MHX A;  2IUC A;  2IUC B;  1KHN A;  1ANI A;  2W8D A;  1AJC A;  1EJJ A;  3M8W A;  4NWJ A;  5EGE A;  1O99 A;  5EGH A;  1KH4 A;  4KAV A;  4LR7 A;  1ED9 A;  4LRA A;  1ALJ A;  2GSU A;  3WAW A;  1AUK A;  1ED8 A;  2W5V A;  4GTZ A;  2XRG A;  1EW2 A;  1KHL A;  1KH5 A;  3WAV A;  3NKP A;  3T00 A;  3WAX A;  4GTX A;  4FDI A;  1ALI A;  3OT9 A;  4KJD A;  4KJG A;  1HDH A;  3DYC A;  5LRN A;  5L0K A;  2W8S A;  4MIV A;  4UPH A;  1E1Z P;  2X98 A;  3DPC A;  3KD8 A;  3LXQ A;  3UNY A;  4KAY A;  3MK1 A;  3UN5 A;  3IGY B;  3B5Q A;  4FDJ A;  1ELZ A;  4LRB A;  4CXU A;  4UOO A;  1Y7A A;  1ZEB A;  3M8Z A;  1K7H A;  5LQQ A;  1SHQ A;  4GTY A;  2W5W A;  1SHN A;  1ANJ A;  2ANH A;  1FSU A;  4B56 A;  1ZED A;  4QAX A;  5L0E A;  1KH7 A;  2VQR A;  4CXK A;  3T02 A;  3TG0 A;  4ZG6 A;  4ZGA A;  5GOV A;  5GRR A;  4N7T A;  1HJK A;  1EW8 A;  2G9Y A;  3SZY A;  3M8Y A;  3UO0 A;  5C66 A;  1P49 A;  2W5X A;  2IFY A;  1EI6 A;  5DLW A;  1ZEF A;  2W5S A;  3NKR A;  5HRT A;  1KHJ A;  4CYS A;  4CXS A;  4UPL A;  1ELY A;  3NKQ A;  4LR2 A;  1AJB A;  1O98 A;  5AJ9 A;  5LRM A;  1EW9 A;  1B8J A;  4TN0 A;  5IJQ A;  4UPK A;  3SZZ A;  3UN2 A;  4KM4 A;  3TX0 A;  1KH9 A; 
#chains in the Genus database with same CATH topology
 3NVL A;  3NKO A;  4GTW A;  5L0B A;  1ALK A;  1URB A;  5IJS A;  1E3C P;  3Q3Q A;  3CMR A;  3A52 A;  2GLQ A;  1ELX A;  1E2S P;  2RH6 A;  2QZU A;  2D1G A;  2ZKT A;  4UOP A;  4UOR A;  4ZG7 A;  5DLV A;  1EQJ A;  2W5Q A;  1AJA A;  4NWX A;  2GSN A;  4YR1 A;  1HQA A;  3IDD A;  5TJ3 A;  4LRE A;  5DLT A;  4LRD A;  4LR8 A;  1N2L A;  5INH A;  1E33 P;  1ALH A;  3BDF A;  3MK0 A;  2GSO A;  1URA A;  4LRC A;  3E2D A;  2W5T A;  3WAY A;  3NKN A;  4ZG9 A;  4LQY A;  3BDG A;  1KHK A;  5KXA A;  3BDG B;  3BDH A;  2XR9 A;  3T01 A;  3WBH A;  5LIA A;  1Y6V A;  3UN3 A;  4LRF A;  4LR9 A;  2GA3 A;  1AJD A;  5K4P A;  4UPI A;  3TWZ A;  3MK2 A;  4CYR A;  3ED4 A;  1N2K A;  3M7V A;  2W5R A;  3IGZ B;  4MY4 A;  3NKM A;  4MHX A;  2IUC A;  2IUC B;  1KHN A;  1ANI A;  2W8D A;  1AJC A;  1EJJ A;  3M8W A;  4NWJ A;  5EGE A;  1O99 A;  5EGH A;  1KH4 A;  4KAV A;  4LR7 A;  1ED9 A;  4LRA A;  1ALJ A;  2GSU A;  3WAW A;  1AUK A;  1ED8 A;  2W5V A;  4GTZ A;  2XRG A;  1EW2 A;  1KHL A;  1KH5 A;  3WAV A;  3NKP A;  3T00 A;  3WAX A;  4GTX A;  4FDI A;  1ALI A;  3OT9 A;  4KJD A;  4KJG A;  1HDH A;  3DYC A;  5LRN A;  5L0K A;  2W8S A;  4MIV A;  4UPH A;  1E1Z P;  2X98 A;  3DPC A;  3KD8 A;  3LXQ A;  3UNY A;  4KAY A;  3MK1 A;  3UN5 A;  3IGY B;  3B5Q A;  4FDJ A;  1ELZ A;  4LRB A;  4CXU A;  4UOO A;  1Y7A A;  1ZEB A;  3M8Z A;  1K7H A;  5LQQ A;  1SHQ A;  4GTY A;  2W5W A;  1SHN A;  1ANJ A;  2ANH A;  1FSU A;  4B56 A;  1ZED A;  4QAX A;  5L0E A;  1KH7 A;  2VQR A;  4CXK A;  3T02 A;  3TG0 A;  4ZG6 A;  4ZGA A;  5GOV A;  5GRR A;  4N7T A;  1HJK A;  1EW8 A;  2G9Y A;  3SZY A;  3M8Y A;  3UO0 A;  5C66 A;  1P49 A;  2W5X A;  2IFY A;  1EI6 A;  5DLW A;  1ZEF A;  2W5S A;  3NKR A;  5HRT A;  1KHJ A;  4CYS A;  4CXS A;  4UPL A;  1ELY A;  3NKQ A;  4LR2 A;  1AJB A;  1O98 A;  5AJ9 A;  5LRM A;  1EW9 A;  1B8J A;  4TN0 A;  5IJQ A;  4UPK A;  3SZZ A;  3UN2 A;  4KM4 A;  3TX0 A;  1KH9 A; 
#chains in the Genus database with same CATH homology
 3NVL A;  3NKO A;  4GTW A;  5L0B A;  1ALK A;  1URB A;  5IJS A;  1E3C P;  3Q3Q A;  3CMR A;  3A52 A;  2GLQ A;  1ELX A;  1E2S P;  2RH6 A;  2QZU A;  2D1G A;  2ZKT A;  4UOP A;  4UOR A;  4ZG7 A;  5DLV A;  1EQJ A;  2W5Q A;  1AJA A;  4NWX A;  2GSN A;  4YR1 A;  1HQA A;  3IDD A;  5TJ3 A;  4LRE A;  5DLT A;  4LRD A;  4LR8 A;  1N2L A;  5INH A;  1E33 P;  1ALH A;  3BDF A;  3MK0 A;  2GSO A;  1URA A;  4LRC A;  3E2D A;  2W5T A;  3WAY A;  3NKN A;  4ZG9 A;  4LQY A;  3BDG A;  1KHK A;  5KXA A;  3BDG B;  3BDH A;  2XR9 A;  3T01 A;  3WBH A;  5LIA A;  1Y6V A;  3UN3 A;  4LRF A;  4LR9 A;  2GA3 A;  1AJD A;  5K4P A;  4UPI A;  3TWZ A;  3MK2 A;  4CYR A;  3ED4 A;  1N2K A;  3M7V A;  2W5R A;  3IGZ B;  4MY4 A;  3NKM A;  4MHX A;  2IUC A;  2IUC B;  1KHN A;  1ANI A;  2W8D A;  1AJC A;  1EJJ A;  3M8W A;  4NWJ A;  5EGE A;  1O99 A;  5EGH A;  1KH4 A;  4KAV A;  4LR7 A;  1ED9 A;  4LRA A;  1ALJ A;  2GSU A;  3WAW A;  1AUK A;  1ED8 A;  2W5V A;  4GTZ A;  2XRG A;  1EW2 A;  1KHL A;  1KH5 A;  3WAV A;  3NKP A;  3T00 A;  3WAX A;  4GTX A;  4FDI A;  1ALI A;  3OT9 A;  4KJD A;  4KJG A;  1HDH A;  3DYC A;  5LRN A;  5L0K A;  2W8S A;  4MIV A;  4UPH A;  1E1Z P;  2X98 A;  3DPC A;  3KD8 A;  3LXQ A;  3UNY A;  4KAY A;  3MK1 A;  3UN5 A;  3IGY B;  3B5Q A;  4FDJ A;  1ELZ A;  4LRB A;  4CXU A;  4UOO A;  1Y7A A;  1ZEB A;  3M8Z A;  1K7H A;  5LQQ A;  1SHQ A;  4GTY A;  2W5W A;  1SHN A;  1ANJ A;  2ANH A;  1FSU A;  4B56 A;  1ZED A;  4QAX A;  5L0E A;  1KH7 A;  2VQR A;  4CXK A;  3T02 A;  3TG0 A;  4ZG6 A;  4ZGA A;  5GOV A;  5GRR A;  4N7T A;  1HJK A;  1EW8 A;  2G9Y A;  3SZY A;  3M8Y A;  3UO0 A;  5C66 A;  1P49 A;  2W5X A;  2IFY A;  1EI6 A;  5DLW A;  1ZEF A;  2W5S A;  3NKR A;  5HRT A;  1KHJ A;  4CYS A;  4CXS A;  4UPL A;  1ELY A;  3NKQ A;  4LR2 A;  1AJB A;  1O98 A;  5AJ9 A;  5LRM A;  1EW9 A;  1B8J A;  4TN0 A;  5IJQ A;  4UPK A;  3SZZ A;  3UN2 A;  4KM4 A;  3TX0 A;  1KH9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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