3MK2A

Placental alkaline phosphatase complexed with phe
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
Knots found
sequence length
481
structure length
480
Chain Sequence
IIPVEEENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPEIPLAMDRFPYVALSKTYNVDKHVPDGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISNMDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAKRQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRDSTLDPSLMEMTEAALRLLSRNPRGFFLFVEGGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKAYTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFAACLEPYTACDLAPPAG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
publication title Refined structures of placental alkaline phosphatase show a consistent pattern of interactions at the peripheral site.
pubmed doi rcsb
molecule keywords Alkaline phosphatase, placental type
total genus 184
structure length 480
sequence length 481
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2010-04-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3mk2A00
4LRCA 2G9YA 4LQYA 1KHNA 1ANJA 3T00A 4UPLA 4CXUA 1SHNA 4ZG6A 1P49A 3BDGA 3UNYA 3A52A 3BDFA 1URBA 4MHXA 1Y7AA 4LREA 5IJSA 1EW2A 5KXAA 3ED4A 4LRBA 1HDHA 2W5RA 4ZG7A 2IUCA 3B5QA 4LR7A 3IGYB 4CXKA 4CYSA 5INHA 3TG0A 2RH6A 2W5XA 3NKMA 2IFYA 2W8DA 3UN5A 1ALHA 1ED9A 4LRAA 3SZYA 1ELXA 3WAVA 2GSNA 2W5QA 4UORA 4GTWA 5DLVA 3T02A 5EGHA 1E3CP 4GTXA 1ANIA 3WBHA 2GLQA 2GSOA 2VQRA 1ALJA 1KH7A 1ED8A 3TX0A 2GSUA 1AJCA 5GRRA 4N7TA 5C66A 1KH4A 3NVLA 3UN2A 5LIAA 2W5TA 4GTZA 3DYCA 1ALKA 3BDHA 4FDIA 3DPCA 4LRFA 5AJ9A 4ZG9A 4NWXA 3NKPA 1EW8A 1N2KA 4CXSA 5GOVA 5TJ3A 5IJQA 2IUCB 1Y6VA 1ELYA 2X98A 3MK0A 1B8JA 4MY4A 1URAA 3LXQA 4CYRA 4KJGA 4NWJA 1AJDA 1ZEDA 4ZGAA 4UPKA 5HRTA 3NKNA 3MK1A 1AJAA 4YR1A 2QZUA 4KJDA 1ZEBA 2XR9A 3M8ZA 3WAWA 2ANHA 1ELZA 1FSUA 3KD8A 5K4PA 3IDDA 5LRMA 1ALIA 4TN0A 1KHLA 1E2SP 1KHJA 2W5SA 2W5VA 1O98A 1AJBA 4KAYA 3WAXA 2D1GA 1EI6A 2XRGA 3BDGB 3UO0A 5L0EA 3NKRA 4LR9A 1E1ZP 1KH9A 3SZZA 3IGZB 4GTYA 1ZEFA 3MK2A 1AUKA 2ZKTA 5LQQA 3M8WA 3Q3QA 4UOPA 3NKOA 1HJKA 4KM4A 3WAYA 3E2DA 2W5WA 1E33P 4MIVA 5EGEA 5DLTA 1KHKA 3M7VA 4FDJA 4UPIA 4KAVA 5L0BA 1K7HA 1O99A 1HQAA 3CMRA 3UN3A 1EW9A 3OT9A 3M8YA 5DLWA 5LRNA 4UOOA 2GA3A 4LR2A 5L0KA 4UPHA 2W8SA 1EQJA 1EJJA 4LR8A 4B56A 3T01A 1SHQA 4LRDA 4QAXA 1KH5A 1N2LA 3TWZA 3NKQA
chains in the Genus database with same CATH superfamily
4LRCA 2G9YA 4LQYA 1KHNA 1ANJA 3T00A 4UPLA 4CXUA 1SHNA 4ZG6A 1P49A 3BDGA 3UNYA 3A52A 3BDFA 1URBA 4MHXA 1Y7AA 4LREA 5IJSA 1EW2A 5KXAA 3ED4A 4LRBA 1HDHA 2W5RA 4ZG7A 2IUCA 3B5QA 4LR7A 3IGYB 4CXKA 4CYSA 5INHA 3TG0A 2RH6A 2W5XA 3NKMA 2IFYA 2W8DA 3UN5A 1ALHA 1ED9A 4LRAA 3SZYA 1ELXA 3WAVA 2GSNA 2W5QA 4UORA 4GTWA 5DLVA 3T02A 5EGHA 1E3CP 4GTXA 1ANIA 3WBHA 2GLQA 2GSOA 2VQRA 1ALJA 1KH7A 1ED8A 3TX0A 2GSUA 1AJCA 5GRRA 4N7TA 5C66A 1KH4A 3NVLA 3UN2A 5LIAA 2W5TA 4GTZA 3DYCA 1ALKA 3BDHA 4FDIA 3DPCA 4LRFA 5AJ9A 4ZG9A 4NWXA 3NKPA 1EW8A 1N2KA 4CXSA 5GOVA 5TJ3A 5IJQA 2IUCB 1Y6VA 1ELYA 2X98A 3MK0A 1B8JA 4MY4A 1URAA 3LXQA 4CYRA 4KJGA 4NWJA 1AJDA 1ZEDA 4ZGAA 4UPKA 5HRTA 3NKNA 3MK1A 1AJAA 4YR1A 2QZUA 4KJDA 1ZEBA 2XR9A 3M8ZA 3WAWA 2ANHA 1ELZA 1FSUA 3KD8A 5K4PA 3IDDA 5LRMA 1ALIA 4TN0A 1KHLA 1E2SP 1KHJA 2W5SA 2W5VA 1O98A 1AJBA 4KAYA 3WAXA 2D1GA 1EI6A 2XRGA 3BDGB 3UO0A 5L0EA 3NKRA 4LR9A 1E1ZP 1KH9A 3SZZA 3IGZB 4GTYA 1ZEFA 3MK2A 1AUKA 2ZKTA 5LQQA 3M8WA 3Q3QA 4UOPA 3NKOA 1HJKA 4KM4A 3WAYA 3E2DA 2W5WA 1E33P 4MIVA 5EGEA 5DLTA 1KHKA 3M7VA 4FDJA 4UPIA 4KAVA 5L0BA 1K7HA 1O99A 1HQAA 3CMRA 3UN3A 1EW9A 3OT9A 3M8YA 5DLWA 5LRNA 4UOOA 2GA3A 4LR2A 5L0KA 4UPHA 2W8SA 1EQJA 1EJJA 4LR8A 4B56A 3T01A 1SHQA 4LRDA 4QAXA 1KH5A 1N2LA 3TWZA 3NKQA
chains in the Genus database with same CATH topology
4LRCA 2G9YA 4LQYA 1KHNA 1ANJA 3T00A 4UPLA 4CXUA 1SHNA 4ZG6A 1P49A 3BDGA 3UNYA 3A52A 3BDFA 1URBA 4MHXA 1Y7AA 4LREA 5IJSA 1EW2A 5KXAA 3ED4A 4LRBA 1HDHA 2W5RA 4ZG7A 2IUCA 3B5QA 4LR7A 3IGYB 4CXKA 4CYSA 5INHA 3TG0A 2RH6A 2W5XA 3NKMA 2IFYA 2W8DA 3UN5A 1ALHA 1ED9A 4LRAA 3SZYA 1ELXA 3WAVA 2GSNA 2W5QA 4UORA 4GTWA 5DLVA 3T02A 5EGHA 1E3CP 4GTXA 1ANIA 3WBHA 2GLQA 2GSOA 2VQRA 1ALJA 1KH7A 1ED8A 3TX0A 2GSUA 1AJCA 5GRRA 4N7TA 5C66A 1KH4A 3NVLA 3UN2A 5LIAA 2W5TA 4GTZA 3DYCA 1ALKA 3BDHA 4FDIA 3DPCA 4LRFA 5AJ9A 4ZG9A 4NWXA 3NKPA 1EW8A 1N2KA 4CXSA 5GOVA 5TJ3A 5IJQA 2IUCB 1Y6VA 1ELYA 2X98A 3MK0A 1B8JA 4MY4A 1URAA 3LXQA 4CYRA 4KJGA 4NWJA 1AJDA 1ZEDA 4ZGAA 4UPKA 5HRTA 3NKNA 3MK1A 1AJAA 4YR1A 2QZUA 4KJDA 1ZEBA 2XR9A 3M8ZA 3WAWA 2ANHA 1ELZA 1FSUA 3KD8A 5K4PA 3IDDA 5LRMA 1ALIA 4TN0A 1KHLA 1E2SP 1KHJA 2W5SA 2W5VA 1O98A 1AJBA 4KAYA 3WAXA 2D1GA 1EI6A 2XRGA 3BDGB 3UO0A 5L0EA 3NKRA 4LR9A 1E1ZP 1KH9A 3SZZA 3IGZB 4GTYA 1ZEFA 3MK2A 1AUKA 2ZKTA 5LQQA 3M8WA 3Q3QA 4UOPA 3NKOA 1HJKA 4KM4A 3WAYA 3E2DA 2W5WA 1E33P 4MIVA 5EGEA 5DLTA 1KHKA 3M7VA 4FDJA 4UPIA 4KAVA 5L0BA 1K7HA 1O99A 1HQAA 3CMRA 3UN3A 1EW9A 3OT9A 3M8YA 5DLWA 5LRNA 4UOOA 2GA3A 4LR2A 5L0KA 4UPHA 2W8SA 1EQJA 1EJJA 4LR8A 4B56A 3T01A 1SHQA 4LRDA 4QAXA 1KH5A 1N2LA 3TWZA 3NKQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LRC A;  2G9Y A;  4LQY A;  1KHN A;  1ANJ A;  3T00 A;  4UPL A;  4CXU A;  1SHN A;  4ZG6 A;  1P49 A;  3BDG A;  3UNY A;  3A52 A;  3BDF A;  1URB A;  4MHX A;  1Y7A A;  4LRE A;  5IJS A;  1EW2 A;  5KXA A;  3ED4 A;  4LRB A;  1HDH A;  2W5R A;  4ZG7 A;  2IUC A;  3B5Q A;  4LR7 A;  3IGY B;  4CXK A;  4CYS A;  5INH A;  3TG0 A;  2RH6 A;  2W5X A;  3NKM A;  2IFY A;  2W8D A;  3UN5 A;  1ALH A;  1ED9 A;  4LRA A;  3SZY A;  1ELX A;  3WAV A;  2GSN A;  2W5Q A;  4UOR A;  4GTW A;  5DLV A;  3T02 A;  5EGH A;  1E3C P;  4GTX A;  1ANI A;  3WBH A;  2GLQ A;  2GSO A;  2VQR A;  1ALJ A;  1KH7 A;  1ED8 A;  3TX0 A;  2GSU A;  1AJC A;  5GRR A;  4N7T A;  5C66 A;  1KH4 A;  3NVL A;  3UN2 A;  5LIA A;  2W5T A;  4GTZ A;  3DYC A;  1ALK A;  3BDH A;  4FDI A;  3DPC A;  4LRF A;  5AJ9 A;  4ZG9 A;  4NWX A;  3NKP A;  1EW8 A;  1N2K A;  4CXS A;  5GOV A;  5TJ3 A;  5IJQ A;  2IUC B;  1Y6V A;  1ELY A;  2X98 A;  3MK0 A;  1B8J A;  4MY4 A;  1URA A;  3LXQ A;  4CYR A;  4KJG A;  4NWJ A;  1AJD A;  1ZED A;  4ZGA A;  4UPK A;  5HRT A;  3NKN A;  3MK1 A;  1AJA A;  4YR1 A;  2QZU A;  4KJD A;  1ZEB A;  2XR9 A;  3M8Z A;  3WAW A;  2ANH A;  1ELZ A;  1FSU A;  3KD8 A;  5K4P A;  3IDD A;  5LRM A;  1ALI A;  4TN0 A;  1KHL A;  1E2S P;  1KHJ A;  2W5S A;  2W5V A;  1O98 A;  1AJB A;  4KAY A;  3WAX A;  2D1G A;  1EI6 A;  2XRG A;  3BDG B;  3UO0 A;  5L0E A;  3NKR A;  4LR9 A;  1E1Z P;  1KH9 A;  3SZZ A;  3IGZ B;  4GTY A;  1ZEF A;  3MK2 A;  1AUK A;  2ZKT A;  5LQQ A;  3M8W A;  3Q3Q A;  4UOP A;  3NKO A;  1HJK A;  4KM4 A;  3WAY A;  3E2D A;  2W5W A;  1E33 P;  4MIV A;  5EGE A;  5DLT A;  1KHK A;  3M7V A;  4FDJ A;  4UPI A;  4KAV A;  5L0B A;  1K7H A;  1O99 A;  1HQA A;  3CMR A;  3UN3 A;  1EW9 A;  3OT9 A;  3M8Y A;  5DLW A;  5LRN A;  4UOO A;  2GA3 A;  4LR2 A;  5L0K A;  4UPH A;  2W8S A;  1EQJ A;  1EJJ A;  4LR8 A;  4B56 A;  3T01 A;  1SHQ A;  4LRD A;  4QAX A;  1KH5 A;  1N2L A;  3TWZ A;  3NKQ A; 
#chains in the Genus database with same CATH topology
 4LRC A;  2G9Y A;  4LQY A;  1KHN A;  1ANJ A;  3T00 A;  4UPL A;  4CXU A;  1SHN A;  4ZG6 A;  1P49 A;  3BDG A;  3UNY A;  3A52 A;  3BDF A;  1URB A;  4MHX A;  1Y7A A;  4LRE A;  5IJS A;  1EW2 A;  5KXA A;  3ED4 A;  4LRB A;  1HDH A;  2W5R A;  4ZG7 A;  2IUC A;  3B5Q A;  4LR7 A;  3IGY B;  4CXK A;  4CYS A;  5INH A;  3TG0 A;  2RH6 A;  2W5X A;  3NKM A;  2IFY A;  2W8D A;  3UN5 A;  1ALH A;  1ED9 A;  4LRA A;  3SZY A;  1ELX A;  3WAV A;  2GSN A;  2W5Q A;  4UOR A;  4GTW A;  5DLV A;  3T02 A;  5EGH A;  1E3C P;  4GTX A;  1ANI A;  3WBH A;  2GLQ A;  2GSO A;  2VQR A;  1ALJ A;  1KH7 A;  1ED8 A;  3TX0 A;  2GSU A;  1AJC A;  5GRR A;  4N7T A;  5C66 A;  1KH4 A;  3NVL A;  3UN2 A;  5LIA A;  2W5T A;  4GTZ A;  3DYC A;  1ALK A;  3BDH A;  4FDI A;  3DPC A;  4LRF A;  5AJ9 A;  4ZG9 A;  4NWX A;  3NKP A;  1EW8 A;  1N2K A;  4CXS A;  5GOV A;  5TJ3 A;  5IJQ A;  2IUC B;  1Y6V A;  1ELY A;  2X98 A;  3MK0 A;  1B8J A;  4MY4 A;  1URA A;  3LXQ A;  4CYR A;  4KJG A;  4NWJ A;  1AJD A;  1ZED A;  4ZGA A;  4UPK A;  5HRT A;  3NKN A;  3MK1 A;  1AJA A;  4YR1 A;  2QZU A;  4KJD A;  1ZEB A;  2XR9 A;  3M8Z A;  3WAW A;  2ANH A;  1ELZ A;  1FSU A;  3KD8 A;  5K4P A;  3IDD A;  5LRM A;  1ALI A;  4TN0 A;  1KHL A;  1E2S P;  1KHJ A;  2W5S A;  2W5V A;  1O98 A;  1AJB A;  4KAY A;  3WAX A;  2D1G A;  1EI6 A;  2XRG A;  3BDG B;  3UO0 A;  5L0E A;  3NKR A;  4LR9 A;  1E1Z P;  1KH9 A;  3SZZ A;  3IGZ B;  4GTY A;  1ZEF A;  3MK2 A;  1AUK A;  2ZKT A;  5LQQ A;  3M8W A;  3Q3Q A;  4UOP A;  3NKO A;  1HJK A;  4KM4 A;  3WAY A;  3E2D A;  2W5W A;  1E33 P;  4MIV A;  5EGE A;  5DLT A;  1KHK A;  3M7V A;  4FDJ A;  4UPI A;  4KAV A;  5L0B A;  1K7H A;  1O99 A;  1HQA A;  3CMR A;  3UN3 A;  1EW9 A;  3OT9 A;  3M8Y A;  5DLW A;  5LRN A;  4UOO A;  2GA3 A;  4LR2 A;  5L0K A;  4UPH A;  2W8S A;  1EQJ A;  1EJJ A;  4LR8 A;  4B56 A;  3T01 A;  1SHQ A;  4LRD A;  4QAX A;  1KH5 A;  1N2L A;  3TWZ A;  3NKQ A; 
#chains in the Genus database with same CATH homology
 4LRC A;  2G9Y A;  4LQY A;  1KHN A;  1ANJ A;  3T00 A;  4UPL A;  4CXU A;  1SHN A;  4ZG6 A;  1P49 A;  3BDG A;  3UNY A;  3A52 A;  3BDF A;  1URB A;  4MHX A;  1Y7A A;  4LRE A;  5IJS A;  1EW2 A;  5KXA A;  3ED4 A;  4LRB A;  1HDH A;  2W5R A;  4ZG7 A;  2IUC A;  3B5Q A;  4LR7 A;  3IGY B;  4CXK A;  4CYS A;  5INH A;  3TG0 A;  2RH6 A;  2W5X A;  3NKM A;  2IFY A;  2W8D A;  3UN5 A;  1ALH A;  1ED9 A;  4LRA A;  3SZY A;  1ELX A;  3WAV A;  2GSN A;  2W5Q A;  4UOR A;  4GTW A;  5DLV A;  3T02 A;  5EGH A;  1E3C P;  4GTX A;  1ANI A;  3WBH A;  2GLQ A;  2GSO A;  2VQR A;  1ALJ A;  1KH7 A;  1ED8 A;  3TX0 A;  2GSU A;  1AJC A;  5GRR A;  4N7T A;  5C66 A;  1KH4 A;  3NVL A;  3UN2 A;  5LIA A;  2W5T A;  4GTZ A;  3DYC A;  1ALK A;  3BDH A;  4FDI A;  3DPC A;  4LRF A;  5AJ9 A;  4ZG9 A;  4NWX A;  3NKP A;  1EW8 A;  1N2K A;  4CXS A;  5GOV A;  5TJ3 A;  5IJQ A;  2IUC B;  1Y6V A;  1ELY A;  2X98 A;  3MK0 A;  1B8J A;  4MY4 A;  1URA A;  3LXQ A;  4CYR A;  4KJG A;  4NWJ A;  1AJD A;  1ZED A;  4ZGA A;  4UPK A;  5HRT A;  3NKN A;  3MK1 A;  1AJA A;  4YR1 A;  2QZU A;  4KJD A;  1ZEB A;  2XR9 A;  3M8Z A;  3WAW A;  2ANH A;  1ELZ A;  1FSU A;  3KD8 A;  5K4P A;  3IDD A;  5LRM A;  1ALI A;  4TN0 A;  1KHL A;  1E2S P;  1KHJ A;  2W5S A;  2W5V A;  1O98 A;  1AJB A;  4KAY A;  3WAX A;  2D1G A;  1EI6 A;  2XRG A;  3BDG B;  3UO0 A;  5L0E A;  3NKR A;  4LR9 A;  1E1Z P;  1KH9 A;  3SZZ A;  3IGZ B;  4GTY A;  1ZEF A;  3MK2 A;  1AUK A;  2ZKT A;  5LQQ A;  3M8W A;  3Q3Q A;  4UOP A;  3NKO A;  1HJK A;  4KM4 A;  3WAY A;  3E2D A;  2W5W A;  1E33 P;  4MIV A;  5EGE A;  5DLT A;  1KHK A;  3M7V A;  4FDJ A;  4UPI A;  4KAV A;  5L0B A;  1K7H A;  1O99 A;  1HQA A;  3CMR A;  3UN3 A;  1EW9 A;  3OT9 A;  3M8Y A;  5DLW A;  5LRN A;  4UOO A;  2GA3 A;  4LR2 A;  5L0K A;  4UPH A;  2W8S A;  1EQJ A;  1EJJ A;  4LR8 A;  4B56 A;  3T01 A;  1SHQ A;  4LRD A;  4QAX A;  1KH5 A;  1N2L A;  3TWZ A;  3NKQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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