4MIVA

Crystal structure of sulfamidase, crystal form l
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
Knots found
sequence length
484
structure length
483
Chain Sequence
PRNALLLLADDGGFESGAYNNSAIATPHLDALARRSLLFRNAFTSVSSSPSRASLLTGLPQHQNGMYGLHQDVHHFNSFDKVRSLPLLLSQAGVRTGIIGKKHVGPETVYPFDFAYTEENGSVLQVGRNITRIKLLVRKFLQTQDDRPFFLYVAFHDPHRCGHSQPQYGTFCEKFGNGESGMGRIPDWTPQAYDPLDVLVPYFVPNTPAARADLAAQYTTVGRMDQGVGLVLQELRDAGVLNDTLVIFTSDNGIPFPSGRTNLYWPGTAEPLLVSSPEHPKRWGQVSEAYVSLLDLTPTILDWFSIPYPSYAIFGSKTIHLTGRSLLPALEAEPLWATVFGSQSHHEVTMSYPMRSVQHRHFRLVHNLNFKMPFPIDQDFYVSPTFQDLLNRTTAGQPTGWYKDLRHYYYRARWELYDRSRDPHETQNLATDPRFAQLLEMLRDQLAKWQWETHDPWVCAPDGVLEEKLSPQCQPLHNELRSH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords N-sulphoglucosamine sulphohydrolase
publication title Structure of sulfamidase provides insight into the molecular pathology of mucopolysaccharidosis IIIA.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Hydrolase
total genus 169
structure length 483
sequence length 484
chains with identical sequence B, C, D, E, F, G, H
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.10.1.1: N-sulfoglucosamine sulfohydrolase.
pdb deposition date 2013-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
A PF16347 DUF4976 Domain of unknown function (DUF4976)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4mivA01
2GSNA 4UPIA 3IGYB 2D1GA 1EI6A 1KH9A 3KD8A 1KHLA 2W8DA 1KHJA 1EW2A 3DYCA 2XR9A 4UORA 2W5SA 1SHNA 1EW8A 3M7VA 1KHKA 3NKQA 2W5RA 4LR7A 4GTXA 4GTZA 4NWJA 3TWZA 1HQAA 1O98A 3MK0A 5HRTA 4KAYA 2VQRA 3WAVA 3B5QA 4UPLA 1AJBA 1KHNA 2GA3A 2W5QA 1K7HA 1HJKA 4N7TA 3SZZA 3IGZB 4ZG7A 4MHXA 4GTYA 4LR9A 5KXAA 1ZEBA 4UPHA 5EGHA 4KJDA 3DPCA 2W5XA 5AJ9A 4LR8A 2G9YA 5GOVA 3BDHA 1URAA 3CMRA 3NKOA 5IJSA 3MK2A 5TJ3A 5LRNA 5L0EA 2GSUA 1E2SP 5DLTA 3UN3A 4LREA 1ED9A 4ZGAA 3BDFA 3M8ZA 2GLQA 3T00A 2W8SA 3WAYA 4UOOA 1AUKA 4FDIA 3NKNA 3M8YA 3SZYA 3T01A 3UO0A 4GTWA 5LIAA 1KH4A 5GRRA 3TG0A 4LRCA 2X98A 3Q3QA 4MY4A 3T02A 1ELYA 2QZUA 1ZEDA 1P49A 4CXSA 5C66A 4LQYA 1KH7A 3OT9A 1N2KA 1EJJA 3WAWA 1ANIA 4NWXA 4ZG9A 3UNYA 1EW9A 3NVLA 2W5VA 5LRMA 4CYRA 4CYSA 1ANJA 1FSUA 1ELXA 2IUCA 1ALJA 2RH6A 3LXQA 1KH5A 4KM4A 4UPKA 5DLVA 4LRDA 4LR2A 1HDHA 2ZKTA 4QAXA 4LRBA 4TN0A 1B8JA 1E3CP 2IFYA 4B56A 5LQQA 1Y7AA 4LRFA 2IUCB 1E33P 1O99A 1N2LA 1ZEFA 1URBA 4KJGA 5EGEA 5DLWA 5IJQA 3TX0A 4UOPA 1ALKA 3IDDA 1ALHA 4YR1A 4MIVA 1AJDA 1ED8A 1EQJA 4CXKA 5INHA 3UN2A 3E2DA 5L0BA 3MK1A 5K4PA 1SHQA 1AJAA 3A52A 1ALIA 3BDGA 3UN5A 4CXUA 2ANHA 3NKPA 3NKMA 1E1ZP 1AJCA 4FDJA 2W5WA 3WBHA 2W5TA 3ED4A 2GSOA 3WAXA 4KAVA 4ZG6A 4LRAA 3M8WA 5L0KA 3NKRA 1Y6VA 3BDGB 2XRGA 1ELZA
chains in the Genus database with same CATH superfamily
2GSNA 4UPIA 3IGYB 2D1GA 1EI6A 1KH9A 3KD8A 1KHLA 2W8DA 1KHJA 1EW2A 3DYCA 2XR9A 4UORA 2W5SA 1SHNA 1EW8A 3M7VA 1KHKA 3NKQA 2W5RA 4LR7A 4GTXA 4GTZA 4NWJA 3TWZA 1HQAA 1O98A 3MK0A 5HRTA 4KAYA 2VQRA 3WAVA 3B5QA 4UPLA 1AJBA 1KHNA 2GA3A 2W5QA 1K7HA 1HJKA 4N7TA 3SZZA 3IGZB 4ZG7A 4MHXA 4GTYA 4LR9A 5KXAA 1ZEBA 4UPHA 5EGHA 4KJDA 3DPCA 2W5XA 5AJ9A 4LR8A 2G9YA 5GOVA 3BDHA 1URAA 3CMRA 3NKOA 5IJSA 3MK2A 5TJ3A 5LRNA 5L0EA 2GSUA 1E2SP 5DLTA 3UN3A 4LREA 1ED9A 4ZGAA 3BDFA 3M8ZA 2GLQA 3T00A 2W8SA 3WAYA 4UOOA 1AUKA 4FDIA 3NKNA 3M8YA 3SZYA 3T01A 3UO0A 4GTWA 5LIAA 1KH4A 5GRRA 3TG0A 4LRCA 2X98A 3Q3QA 4MY4A 3T02A 1ELYA 2QZUA 1ZEDA 1P49A 4CXSA 5C66A 4LQYA 1KH7A 3OT9A 1N2KA 1EJJA 3WAWA 1ANIA 4NWXA 4ZG9A 3UNYA 1EW9A 3NVLA 2W5VA 5LRMA 4CYRA 4CYSA 1ANJA 1FSUA 1ELXA 2IUCA 1ALJA 2RH6A 3LXQA 1KH5A 4KM4A 4UPKA 5DLVA 4LRDA 4LR2A 1HDHA 2ZKTA 4QAXA 4LRBA 4TN0A 1B8JA 1E3CP 2IFYA 4B56A 5LQQA 1Y7AA 4LRFA 2IUCB 1E33P 1O99A 1N2LA 1ZEFA 1URBA 4KJGA 5EGEA 5DLWA 5IJQA 3TX0A 4UOPA 1ALKA 3IDDA 1ALHA 4YR1A 4MIVA 1AJDA 1ED8A 1EQJA 4CXKA 5INHA 3UN2A 3E2DA 5L0BA 3MK1A 5K4PA 1SHQA 1AJAA 3A52A 1ALIA 3BDGA 3UN5A 4CXUA 2ANHA 3NKPA 3NKMA 1E1ZP 1AJCA 4FDJA 2W5WA 3WBHA 2W5TA 3ED4A 2GSOA 3WAXA 4KAVA 4ZG6A 4LRAA 3M8WA 5L0KA 3NKRA 1Y6VA 3BDGB 2XRGA 1ELZA
chains in the Genus database with same CATH topology
2GSNA 4UPIA 3IGYB 2D1GA 1EI6A 1KH9A 3KD8A 1KHLA 2W8DA 1KHJA 1EW2A 3DYCA 2XR9A 4UORA 2W5SA 1SHNA 1EW8A 3M7VA 1KHKA 3NKQA 2W5RA 4LR7A 4GTXA 4GTZA 4NWJA 3TWZA 1HQAA 1O98A 3MK0A 5HRTA 4KAYA 2VQRA 3WAVA 3B5QA 4UPLA 1AJBA 1KHNA 2GA3A 2W5QA 1K7HA 1HJKA 4N7TA 3SZZA 3IGZB 4ZG7A 4MHXA 4GTYA 4LR9A 5KXAA 1ZEBA 4UPHA 5EGHA 4KJDA 3DPCA 2W5XA 5AJ9A 4LR8A 2G9YA 5GOVA 3BDHA 1URAA 3CMRA 3NKOA 5IJSA 3MK2A 5TJ3A 5LRNA 5L0EA 2GSUA 1E2SP 5DLTA 3UN3A 4LREA 1ED9A 4ZGAA 3BDFA 3M8ZA 2GLQA 3T00A 2W8SA 3WAYA 4UOOA 1AUKA 4FDIA 3NKNA 3M8YA 3SZYA 3T01A 3UO0A 4GTWA 5LIAA 1KH4A 5GRRA 3TG0A 4LRCA 2X98A 3Q3QA 4MY4A 3T02A 1ELYA 2QZUA 1ZEDA 1P49A 4CXSA 5C66A 4LQYA 1KH7A 3OT9A 1N2KA 1EJJA 3WAWA 1ANIA 4NWXA 4ZG9A 3UNYA 1EW9A 3NVLA 2W5VA 5LRMA 4CYRA 4CYSA 1ANJA 1FSUA 1ELXA 2IUCA 1ALJA 2RH6A 3LXQA 1KH5A 4KM4A 4UPKA 5DLVA 4LRDA 4LR2A 1HDHA 2ZKTA 4QAXA 4LRBA 4TN0A 1B8JA 1E3CP 2IFYA 4B56A 5LQQA 1Y7AA 4LRFA 2IUCB 1E33P 1O99A 1N2LA 1ZEFA 1URBA 4KJGA 5EGEA 5DLWA 5IJQA 3TX0A 4UOPA 1ALKA 3IDDA 1ALHA 4YR1A 4MIVA 1AJDA 1ED8A 1EQJA 4CXKA 5INHA 3UN2A 3E2DA 5L0BA 3MK1A 5K4PA 1SHQA 1AJAA 3A52A 1ALIA 3BDGA 3UN5A 4CXUA 2ANHA 3NKPA 3NKMA 1E1ZP 1AJCA 4FDJA 2W5WA 3WBHA 2W5TA 3ED4A 2GSOA 3WAXA 4KAVA 4ZG6A 4LRAA 3M8WA 5L0KA 3NKRA 1Y6VA 3BDGB 2XRGA 1ELZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GSN A;  4UPI A;  3IGY B;  2D1G A;  1EI6 A;  1KH9 A;  3KD8 A;  1KHL A;  2W8D A;  1KHJ A;  1EW2 A;  3DYC A;  2XR9 A;  4UOR A;  2W5S A;  1SHN A;  1EW8 A;  3M7V A;  1KHK A;  3NKQ A;  2W5R A;  4LR7 A;  4GTX A;  4GTZ A;  4NWJ A;  3TWZ A;  1HQA A;  1O98 A;  3MK0 A;  5HRT A;  4KAY A;  2VQR A;  3WAV A;  3B5Q A;  4UPL A;  1AJB A;  1KHN A;  2GA3 A;  2W5Q A;  1K7H A;  1HJK A;  4N7T A;  3SZZ A;  3IGZ B;  4ZG7 A;  4MHX A;  4GTY A;  4LR9 A;  5KXA A;  1ZEB A;  4UPH A;  5EGH A;  4KJD A;  3DPC A;  2W5X A;  5AJ9 A;  4LR8 A;  2G9Y A;  5GOV A;  3BDH A;  1URA A;  3CMR A;  3NKO A;  5IJS A;  3MK2 A;  5TJ3 A;  5LRN A;  5L0E A;  2GSU A;  1E2S P;  5DLT A;  3UN3 A;  4LRE A;  1ED9 A;  4ZGA A;  3BDF A;  3M8Z A;  2GLQ A;  3T00 A;  2W8S A;  3WAY A;  4UOO A;  1AUK A;  4FDI A;  3NKN A;  3M8Y A;  3SZY A;  3T01 A;  3UO0 A;  4GTW A;  5LIA A;  1KH4 A;  5GRR A;  3TG0 A;  4LRC A;  2X98 A;  3Q3Q A;  4MY4 A;  3T02 A;  1ELY A;  2QZU A;  1ZED A;  1P49 A;  4CXS A;  5C66 A;  4LQY A;  1KH7 A;  3OT9 A;  1N2K A;  1EJJ A;  3WAW A;  1ANI A;  4NWX A;  4ZG9 A;  3UNY A;  1EW9 A;  3NVL A;  2W5V A;  5LRM A;  4CYR A;  4CYS A;  1ANJ A;  1FSU A;  1ELX A;  2IUC A;  1ALJ A;  2RH6 A;  3LXQ A;  1KH5 A;  4KM4 A;  4UPK A;  5DLV A;  4LRD A;  4LR2 A;  1HDH A;  2ZKT A;  4QAX A;  4LRB A;  4TN0 A;  1B8J A;  1E3C P;  2IFY A;  4B56 A;  5LQQ A;  1Y7A A;  4LRF A;  2IUC B;  1E33 P;  1O99 A;  1N2L A;  1ZEF A;  1URB A;  4KJG A;  5EGE A;  5DLW A;  5IJQ A;  3TX0 A;  4UOP A;  1ALK A;  3IDD A;  1ALH A;  4YR1 A;  4MIV A;  1AJD A;  1ED8 A;  1EQJ A;  4CXK A;  5INH A;  3UN2 A;  3E2D A;  5L0B A;  3MK1 A;  5K4P A;  1SHQ A;  1AJA A;  3A52 A;  1ALI A;  3BDG A;  3UN5 A;  4CXU A;  2ANH A;  3NKP A;  3NKM A;  1E1Z P;  1AJC A;  4FDJ A;  2W5W A;  3WBH A;  2W5T A;  3ED4 A;  2GSO A;  3WAX A;  4KAV A;  4ZG6 A;  4LRA A;  3M8W A;  5L0K A;  3NKR A;  1Y6V A;  3BDG B;  2XRG A;  1ELZ A; 
#chains in the Genus database with same CATH topology
 2GSN A;  4UPI A;  3IGY B;  2D1G A;  1EI6 A;  1KH9 A;  3KD8 A;  1KHL A;  2W8D A;  1KHJ A;  1EW2 A;  3DYC A;  2XR9 A;  4UOR A;  2W5S A;  1SHN A;  1EW8 A;  3M7V A;  1KHK A;  3NKQ A;  2W5R A;  4LR7 A;  4GTX A;  4GTZ A;  4NWJ A;  3TWZ A;  1HQA A;  1O98 A;  3MK0 A;  5HRT A;  4KAY A;  2VQR A;  3WAV A;  3B5Q A;  4UPL A;  1AJB A;  1KHN A;  2GA3 A;  2W5Q A;  1K7H A;  1HJK A;  4N7T A;  3SZZ A;  3IGZ B;  4ZG7 A;  4MHX A;  4GTY A;  4LR9 A;  5KXA A;  1ZEB A;  4UPH A;  5EGH A;  4KJD A;  3DPC A;  2W5X A;  5AJ9 A;  4LR8 A;  2G9Y A;  5GOV A;  3BDH A;  1URA A;  3CMR A;  3NKO A;  5IJS A;  3MK2 A;  5TJ3 A;  5LRN A;  5L0E A;  2GSU A;  1E2S P;  5DLT A;  3UN3 A;  4LRE A;  1ED9 A;  4ZGA A;  3BDF A;  3M8Z A;  2GLQ A;  3T00 A;  2W8S A;  3WAY A;  4UOO A;  1AUK A;  4FDI A;  3NKN A;  3M8Y A;  3SZY A;  3T01 A;  3UO0 A;  4GTW A;  5LIA A;  1KH4 A;  5GRR A;  3TG0 A;  4LRC A;  2X98 A;  3Q3Q A;  4MY4 A;  3T02 A;  1ELY A;  2QZU A;  1ZED A;  1P49 A;  4CXS A;  5C66 A;  4LQY A;  1KH7 A;  3OT9 A;  1N2K A;  1EJJ A;  3WAW A;  1ANI A;  4NWX A;  4ZG9 A;  3UNY A;  1EW9 A;  3NVL A;  2W5V A;  5LRM A;  4CYR A;  4CYS A;  1ANJ A;  1FSU A;  1ELX A;  2IUC A;  1ALJ A;  2RH6 A;  3LXQ A;  1KH5 A;  4KM4 A;  4UPK A;  5DLV A;  4LRD A;  4LR2 A;  1HDH A;  2ZKT A;  4QAX A;  4LRB A;  4TN0 A;  1B8J A;  1E3C P;  2IFY A;  4B56 A;  5LQQ A;  1Y7A A;  4LRF A;  2IUC B;  1E33 P;  1O99 A;  1N2L A;  1ZEF A;  1URB A;  4KJG A;  5EGE A;  5DLW A;  5IJQ A;  3TX0 A;  4UOP A;  1ALK A;  3IDD A;  1ALH A;  4YR1 A;  4MIV A;  1AJD A;  1ED8 A;  1EQJ A;  4CXK A;  5INH A;  3UN2 A;  3E2D A;  5L0B A;  3MK1 A;  5K4P A;  1SHQ A;  1AJA A;  3A52 A;  1ALI A;  3BDG A;  3UN5 A;  4CXU A;  2ANH A;  3NKP A;  3NKM A;  1E1Z P;  1AJC A;  4FDJ A;  2W5W A;  3WBH A;  2W5T A;  3ED4 A;  2GSO A;  3WAX A;  4KAV A;  4ZG6 A;  4LRA A;  3M8W A;  5L0K A;  3NKR A;  1Y6V A;  3BDG B;  2XRG A;  1ELZ A; 
#chains in the Genus database with same CATH homology
 2GSN A;  4UPI A;  3IGY B;  2D1G A;  1EI6 A;  1KH9 A;  3KD8 A;  1KHL A;  2W8D A;  1KHJ A;  1EW2 A;  3DYC A;  2XR9 A;  4UOR A;  2W5S A;  1SHN A;  1EW8 A;  3M7V A;  1KHK A;  3NKQ A;  2W5R A;  4LR7 A;  4GTX A;  4GTZ A;  4NWJ A;  3TWZ A;  1HQA A;  1O98 A;  3MK0 A;  5HRT A;  4KAY A;  2VQR A;  3WAV A;  3B5Q A;  4UPL A;  1AJB A;  1KHN A;  2GA3 A;  2W5Q A;  1K7H A;  1HJK A;  4N7T A;  3SZZ A;  3IGZ B;  4ZG7 A;  4MHX A;  4GTY A;  4LR9 A;  5KXA A;  1ZEB A;  4UPH A;  5EGH A;  4KJD A;  3DPC A;  2W5X A;  5AJ9 A;  4LR8 A;  2G9Y A;  5GOV A;  3BDH A;  1URA A;  3CMR A;  3NKO A;  5IJS A;  3MK2 A;  5TJ3 A;  5LRN A;  5L0E A;  2GSU A;  1E2S P;  5DLT A;  3UN3 A;  4LRE A;  1ED9 A;  4ZGA A;  3BDF A;  3M8Z A;  2GLQ A;  3T00 A;  2W8S A;  3WAY A;  4UOO A;  1AUK A;  4FDI A;  3NKN A;  3M8Y A;  3SZY A;  3T01 A;  3UO0 A;  4GTW A;  5LIA A;  1KH4 A;  5GRR A;  3TG0 A;  4LRC A;  2X98 A;  3Q3Q A;  4MY4 A;  3T02 A;  1ELY A;  2QZU A;  1ZED A;  1P49 A;  4CXS A;  5C66 A;  4LQY A;  1KH7 A;  3OT9 A;  1N2K A;  1EJJ A;  3WAW A;  1ANI A;  4NWX A;  4ZG9 A;  3UNY A;  1EW9 A;  3NVL A;  2W5V A;  5LRM A;  4CYR A;  4CYS A;  1ANJ A;  1FSU A;  1ELX A;  2IUC A;  1ALJ A;  2RH6 A;  3LXQ A;  1KH5 A;  4KM4 A;  4UPK A;  5DLV A;  4LRD A;  4LR2 A;  1HDH A;  2ZKT A;  4QAX A;  4LRB A;  4TN0 A;  1B8J A;  1E3C P;  2IFY A;  4B56 A;  5LQQ A;  1Y7A A;  4LRF A;  2IUC B;  1E33 P;  1O99 A;  1N2L A;  1ZEF A;  1URB A;  4KJG A;  5EGE A;  5DLW A;  5IJQ A;  3TX0 A;  4UOP A;  1ALK A;  3IDD A;  1ALH A;  4YR1 A;  4MIV A;  1AJD A;  1ED8 A;  1EQJ A;  4CXK A;  5INH A;  3UN2 A;  3E2D A;  5L0B A;  3MK1 A;  5K4P A;  1SHQ A;  1AJA A;  3A52 A;  1ALI A;  3BDG A;  3UN5 A;  4CXU A;  2ANH A;  3NKP A;  3NKM A;  1E1Z P;  1AJC A;  4FDJ A;  2W5W A;  3WBH A;  2W5T A;  3ED4 A;  2GSO A;  3WAX A;  4KAV A;  4ZG6 A;  4LRA A;  3M8W A;  5L0K A;  3NKR A;  1Y6V A;  3BDG B;  2XRG A;  1ELZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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