4MIVA

Crystal structure of sulfamidase, crystal form l
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
Knots found
sequence length
484
structure length
483
Chain Sequence
PRNALLLLADDGGFESGAYNNSAIATPHLDALARRSLLFRNAFTSVSSSPSRASLLTGLPQHQNGMYGLHQDVHHFNSFDKVRSLPLLLSQAGVRTGIIGKKHVGPETVYPFDFAYTEENGSVLQVGRNITRIKLLVRKFLQTQDDRPFFLYVAFHDPHRCGHSQPQYGTFCEKFGNGESGMGRIPDWTPQAYDPLDVLVPYFVPNTPAARADLAAQYTTVGRMDQGVGLVLQELRDAGVLNDTLVIFTSDNGIPFPSGRTNLYWPGTAEPLLVSSPEHPKRWGQVSEAYVSLLDLTPTILDWFSIPYPSYAIFGSKTIHLTGRSLLPALEAEPLWATVFGSQSHHEVTMSYPMRSVQHRHFRLVHNLNFKMPFPIDQDFYVSPTFQDLLNRTTAGQPTGWYKDLRHYYYRARWELYDRSRDPHETQNLATDPRFAQLLEMLRDQLAKWQWETHDPWVCAPDGVLEEKLSPQCQPLHNELRSH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Homo sapiens
publication title Structure of sulfamidase provides insight into the molecular pathology of mucopolysaccharidosis IIIA.
pubmed doi rcsb
molecule keywords N-sulphoglucosamine sulphohydrolase
total genus 169
structure length 483
sequence length 484
chains with identical sequence B, C, D, E, F, G, H
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.10.1.1: N-sulfoglucosamine sulfohydrolase.
pdb deposition date 2013-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
A PF16347 DUF4976 Domain of unknown function (DUF4976)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4mivA01
5L0EA 1EJJA 3NVLA 2IFYA 1HQAA 1KH4A 3WBHA 3UN5A 3UN3A 5C66A 4UORA 4NWXA 3SZZA 3BDFA 2W8DA 5IJSA 1E3CP 1URAA 3MK1A 3A52A 4KJDA 5INHA 3UO0A 1Y6VA 4GTWA 4KM4A 3M8YA 4UPKA 1AJBA 4UPIA 4LRDA 1ZEFA 4YR1A 1EW9A 1P49A 2D1GA 4LQYA 2W5SA 4GTYA 4KJGA 1E1ZP 1AJAA 3WAYA 3BDGA 5AJ9A 1SHQA 1E33P 3KD8A 1AJDA 3MK2A 1N2KA 3LXQA 1ELXA 1FSUA 4TN0A 4B56A 4GTZA 2ZKTA 1EQJA 2G9YA 2GSOA 1AJCA 3MK0A 4UOPA 5GOVA 3DPCA 5HRTA 1N2LA 2XRGA 4LRBA 3WAXA 2IUCB 4GTXA 5EGEA 3NKQA 2GSUA 3Q3QA 3ED4A 4UPHA 4CXSA 1KH5A 1K7HA 1ANJA 2QZUA 5LRMA 4CYRA 1AUKA 3UNYA 5GRRA 2W8SA 4MIVA 3M8ZA 4CXUA 1KH7A 1KHLA 1KHNA 4LRCA 4LREA 4LR8A 5DLTA 4NWJA 1ALKA 4ZGAA 4FDJA 4LRAA 5LQQA 5LIAA 4CYSA 4LR2A 1ZEBA 3CMRA 5KXAA 1O99A 2W5VA 4MY4A 3IGZB 3WAVA 4QAXA 4N7TA 3T00A 3T01A 1ALHA 5DLWA 3B5QA 4ZG9A 2IUCA 4ZG7A 4KAYA 5L0KA 2W5QA 3DYCA 3TWZA 3TX0A 4CXKA 2X98A 3NKRA 3NKNA 3TG0A 1URBA 1O98A 4ZG6A 1ED9A 1EW8A 3T02A 3NKPA 1E2SP 2W5RA 3BDHA 4FDIA 4MHXA 4LR7A 4UPLA 5IJQA 1HDHA 1KHKA 4LRFA 5EGHA 3UN2A 4LR9A 2ANHA 1ZEDA 1EW2A 1B8JA 1KHJA 5K4PA 5TJ3A 3WAWA 1ELZA 2GSNA 4KAVA 2GA3A 3SZYA 5DLVA 1HJKA 1Y7AA 1ANIA 3IGYB 3IDDA 3M7VA 3NKMA 4UOOA 2W5XA 3E2DA 2RH6A 3M8WA 1ED8A 2W5TA 1KH9A 1SHNA 2GLQA 1ALIA 2W5WA 3NKOA 5L0BA 3OT9A 2VQRA 2XR9A 1EI6A 3BDGB 1ALJA 1ELYA 5LRNA
chains in the Genus database with same CATH superfamily
5L0EA 1EJJA 3NVLA 2IFYA 1HQAA 1KH4A 3WBHA 3UN5A 3UN3A 5C66A 4UORA 4NWXA 3SZZA 3BDFA 2W8DA 5IJSA 1E3CP 1URAA 3MK1A 3A52A 4KJDA 5INHA 3UO0A 1Y6VA 4GTWA 4KM4A 3M8YA 4UPKA 1AJBA 4UPIA 4LRDA 1ZEFA 4YR1A 1EW9A 1P49A 2D1GA 4LQYA 2W5SA 4GTYA 4KJGA 1E1ZP 1AJAA 3WAYA 3BDGA 5AJ9A 1SHQA 1E33P 3KD8A 1AJDA 3MK2A 1N2KA 3LXQA 1ELXA 1FSUA 4TN0A 4B56A 4GTZA 2ZKTA 1EQJA 2G9YA 2GSOA 1AJCA 3MK0A 4UOPA 5GOVA 3DPCA 5HRTA 1N2LA 2XRGA 4LRBA 3WAXA 2IUCB 4GTXA 5EGEA 3NKQA 2GSUA 3Q3QA 3ED4A 4UPHA 4CXSA 1KH5A 1K7HA 1ANJA 2QZUA 5LRMA 4CYRA 1AUKA 3UNYA 5GRRA 2W8SA 4MIVA 3M8ZA 4CXUA 1KH7A 1KHLA 1KHNA 4LRCA 4LREA 4LR8A 5DLTA 4NWJA 1ALKA 4ZGAA 4FDJA 4LRAA 5LQQA 5LIAA 4CYSA 4LR2A 1ZEBA 3CMRA 5KXAA 1O99A 2W5VA 4MY4A 3IGZB 3WAVA 4QAXA 4N7TA 3T00A 3T01A 1ALHA 5DLWA 3B5QA 4ZG9A 2IUCA 4ZG7A 4KAYA 5L0KA 2W5QA 3DYCA 3TWZA 3TX0A 4CXKA 2X98A 3NKRA 3NKNA 3TG0A 1URBA 1O98A 4ZG6A 1ED9A 1EW8A 3T02A 3NKPA 1E2SP 2W5RA 3BDHA 4FDIA 4MHXA 4LR7A 4UPLA 5IJQA 1HDHA 1KHKA 4LRFA 5EGHA 3UN2A 4LR9A 2ANHA 1ZEDA 1EW2A 1B8JA 1KHJA 5K4PA 5TJ3A 3WAWA 1ELZA 2GSNA 4KAVA 2GA3A 3SZYA 5DLVA 1HJKA 1Y7AA 1ANIA 3IGYB 3IDDA 3M7VA 3NKMA 4UOOA 2W5XA 3E2DA 2RH6A 3M8WA 1ED8A 2W5TA 1KH9A 1SHNA 2GLQA 1ALIA 2W5WA 3NKOA 5L0BA 3OT9A 2VQRA 2XR9A 1EI6A 3BDGB 1ALJA 1ELYA 5LRNA
chains in the Genus database with same CATH topology
5L0EA 1EJJA 3NVLA 2IFYA 1HQAA 1KH4A 3WBHA 3UN5A 3UN3A 5C66A 4UORA 4NWXA 3SZZA 3BDFA 2W8DA 5IJSA 1E3CP 1URAA 3MK1A 3A52A 4KJDA 5INHA 3UO0A 1Y6VA 4GTWA 4KM4A 3M8YA 4UPKA 1AJBA 4UPIA 4LRDA 1ZEFA 4YR1A 1EW9A 1P49A 2D1GA 4LQYA 2W5SA 4GTYA 4KJGA 1E1ZP 1AJAA 3WAYA 3BDGA 5AJ9A 1SHQA 1E33P 3KD8A 1AJDA 3MK2A 1N2KA 3LXQA 1ELXA 1FSUA 4TN0A 4B56A 4GTZA 2ZKTA 1EQJA 2G9YA 2GSOA 1AJCA 3MK0A 4UOPA 5GOVA 3DPCA 5HRTA 1N2LA 2XRGA 4LRBA 3WAXA 2IUCB 4GTXA 5EGEA 3NKQA 2GSUA 3Q3QA 3ED4A 4UPHA 4CXSA 1KH5A 1K7HA 1ANJA 2QZUA 5LRMA 4CYRA 1AUKA 3UNYA 5GRRA 2W8SA 4MIVA 3M8ZA 4CXUA 1KH7A 1KHLA 1KHNA 4LRCA 4LREA 4LR8A 5DLTA 4NWJA 1ALKA 4ZGAA 4FDJA 4LRAA 5LQQA 5LIAA 4CYSA 4LR2A 1ZEBA 3CMRA 5KXAA 1O99A 2W5VA 4MY4A 3IGZB 3WAVA 4QAXA 4N7TA 3T00A 3T01A 1ALHA 5DLWA 3B5QA 4ZG9A 2IUCA 4ZG7A 4KAYA 5L0KA 2W5QA 3DYCA 3TWZA 3TX0A 4CXKA 2X98A 3NKRA 3NKNA 3TG0A 1URBA 1O98A 4ZG6A 1ED9A 1EW8A 3T02A 3NKPA 1E2SP 2W5RA 3BDHA 4FDIA 4MHXA 4LR7A 4UPLA 5IJQA 1HDHA 1KHKA 4LRFA 5EGHA 3UN2A 4LR9A 2ANHA 1ZEDA 1EW2A 1B8JA 1KHJA 5K4PA 5TJ3A 3WAWA 1ELZA 2GSNA 4KAVA 2GA3A 3SZYA 5DLVA 1HJKA 1Y7AA 1ANIA 3IGYB 3IDDA 3M7VA 3NKMA 4UOOA 2W5XA 3E2DA 2RH6A 3M8WA 1ED8A 2W5TA 1KH9A 1SHNA 2GLQA 1ALIA 2W5WA 3NKOA 5L0BA 3OT9A 2VQRA 2XR9A 1EI6A 3BDGB 1ALJA 1ELYA 5LRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L0E A;  1EJJ A;  3NVL A;  2IFY A;  1HQA A;  1KH4 A;  3WBH A;  3UN5 A;  3UN3 A;  5C66 A;  4UOR A;  4NWX A;  3SZZ A;  3BDF A;  2W8D A;  5IJS A;  1E3C P;  1URA A;  3MK1 A;  3A52 A;  4KJD A;  5INH A;  3UO0 A;  1Y6V A;  4GTW A;  4KM4 A;  3M8Y A;  4UPK A;  1AJB A;  4UPI A;  4LRD A;  1ZEF A;  4YR1 A;  1EW9 A;  1P49 A;  2D1G A;  4LQY A;  2W5S A;  4GTY A;  4KJG A;  1E1Z P;  1AJA A;  3WAY A;  3BDG A;  5AJ9 A;  1SHQ A;  1E33 P;  3KD8 A;  1AJD A;  3MK2 A;  1N2K A;  3LXQ A;  1ELX A;  1FSU A;  4TN0 A;  4B56 A;  4GTZ A;  2ZKT A;  1EQJ A;  2G9Y A;  2GSO A;  1AJC A;  3MK0 A;  4UOP A;  5GOV A;  3DPC A;  5HRT A;  1N2L A;  2XRG A;  4LRB A;  3WAX A;  2IUC B;  4GTX A;  5EGE A;  3NKQ A;  2GSU A;  3Q3Q A;  3ED4 A;  4UPH A;  4CXS A;  1KH5 A;  1K7H A;  1ANJ A;  2QZU A;  5LRM A;  4CYR A;  1AUK A;  3UNY A;  5GRR A;  2W8S A;  4MIV A;  3M8Z A;  4CXU A;  1KH7 A;  1KHL A;  1KHN A;  4LRC A;  4LRE A;  4LR8 A;  5DLT A;  4NWJ A;  1ALK A;  4ZGA A;  4FDJ A;  4LRA A;  5LQQ A;  5LIA A;  4CYS A;  4LR2 A;  1ZEB A;  3CMR A;  5KXA A;  1O99 A;  2W5V A;  4MY4 A;  3IGZ B;  3WAV A;  4QAX A;  4N7T A;  3T00 A;  3T01 A;  1ALH A;  5DLW A;  3B5Q A;  4ZG9 A;  2IUC A;  4ZG7 A;  4KAY A;  5L0K A;  2W5Q A;  3DYC A;  3TWZ A;  3TX0 A;  4CXK A;  2X98 A;  3NKR A;  3NKN A;  3TG0 A;  1URB A;  1O98 A;  4ZG6 A;  1ED9 A;  1EW8 A;  3T02 A;  3NKP A;  1E2S P;  2W5R A;  3BDH A;  4FDI A;  4MHX A;  4LR7 A;  4UPL A;  5IJQ A;  1HDH A;  1KHK A;  4LRF A;  5EGH A;  3UN2 A;  4LR9 A;  2ANH A;  1ZED A;  1EW2 A;  1B8J A;  1KHJ A;  5K4P A;  5TJ3 A;  3WAW A;  1ELZ A;  2GSN A;  4KAV A;  2GA3 A;  3SZY A;  5DLV A;  1HJK A;  1Y7A A;  1ANI A;  3IGY B;  3IDD A;  3M7V A;  3NKM A;  4UOO A;  2W5X A;  3E2D A;  2RH6 A;  3M8W A;  1ED8 A;  2W5T A;  1KH9 A;  1SHN A;  2GLQ A;  1ALI A;  2W5W A;  3NKO A;  5L0B A;  3OT9 A;  2VQR A;  2XR9 A;  1EI6 A;  3BDG B;  1ALJ A;  1ELY A;  5LRN A; 
#chains in the Genus database with same CATH topology
 5L0E A;  1EJJ A;  3NVL A;  2IFY A;  1HQA A;  1KH4 A;  3WBH A;  3UN5 A;  3UN3 A;  5C66 A;  4UOR A;  4NWX A;  3SZZ A;  3BDF A;  2W8D A;  5IJS A;  1E3C P;  1URA A;  3MK1 A;  3A52 A;  4KJD A;  5INH A;  3UO0 A;  1Y6V A;  4GTW A;  4KM4 A;  3M8Y A;  4UPK A;  1AJB A;  4UPI A;  4LRD A;  1ZEF A;  4YR1 A;  1EW9 A;  1P49 A;  2D1G A;  4LQY A;  2W5S A;  4GTY A;  4KJG A;  1E1Z P;  1AJA A;  3WAY A;  3BDG A;  5AJ9 A;  1SHQ A;  1E33 P;  3KD8 A;  1AJD A;  3MK2 A;  1N2K A;  3LXQ A;  1ELX A;  1FSU A;  4TN0 A;  4B56 A;  4GTZ A;  2ZKT A;  1EQJ A;  2G9Y A;  2GSO A;  1AJC A;  3MK0 A;  4UOP A;  5GOV A;  3DPC A;  5HRT A;  1N2L A;  2XRG A;  4LRB A;  3WAX A;  2IUC B;  4GTX A;  5EGE A;  3NKQ A;  2GSU A;  3Q3Q A;  3ED4 A;  4UPH A;  4CXS A;  1KH5 A;  1K7H A;  1ANJ A;  2QZU A;  5LRM A;  4CYR A;  1AUK A;  3UNY A;  5GRR A;  2W8S A;  4MIV A;  3M8Z A;  4CXU A;  1KH7 A;  1KHL A;  1KHN A;  4LRC A;  4LRE A;  4LR8 A;  5DLT A;  4NWJ A;  1ALK A;  4ZGA A;  4FDJ A;  4LRA A;  5LQQ A;  5LIA A;  4CYS A;  4LR2 A;  1ZEB A;  3CMR A;  5KXA A;  1O99 A;  2W5V A;  4MY4 A;  3IGZ B;  3WAV A;  4QAX A;  4N7T A;  3T00 A;  3T01 A;  1ALH A;  5DLW A;  3B5Q A;  4ZG9 A;  2IUC A;  4ZG7 A;  4KAY A;  5L0K A;  2W5Q A;  3DYC A;  3TWZ A;  3TX0 A;  4CXK A;  2X98 A;  3NKR A;  3NKN A;  3TG0 A;  1URB A;  1O98 A;  4ZG6 A;  1ED9 A;  1EW8 A;  3T02 A;  3NKP A;  1E2S P;  2W5R A;  3BDH A;  4FDI A;  4MHX A;  4LR7 A;  4UPL A;  5IJQ A;  1HDH A;  1KHK A;  4LRF A;  5EGH A;  3UN2 A;  4LR9 A;  2ANH A;  1ZED A;  1EW2 A;  1B8J A;  1KHJ A;  5K4P A;  5TJ3 A;  3WAW A;  1ELZ A;  2GSN A;  4KAV A;  2GA3 A;  3SZY A;  5DLV A;  1HJK A;  1Y7A A;  1ANI A;  3IGY B;  3IDD A;  3M7V A;  3NKM A;  4UOO A;  2W5X A;  3E2D A;  2RH6 A;  3M8W A;  1ED8 A;  2W5T A;  1KH9 A;  1SHN A;  2GLQ A;  1ALI A;  2W5W A;  3NKO A;  5L0B A;  3OT9 A;  2VQR A;  2XR9 A;  1EI6 A;  3BDG B;  1ALJ A;  1ELY A;  5LRN A; 
#chains in the Genus database with same CATH homology
 5L0E A;  1EJJ A;  3NVL A;  2IFY A;  1HQA A;  1KH4 A;  3WBH A;  3UN5 A;  3UN3 A;  5C66 A;  4UOR A;  4NWX A;  3SZZ A;  3BDF A;  2W8D A;  5IJS A;  1E3C P;  1URA A;  3MK1 A;  3A52 A;  4KJD A;  5INH A;  3UO0 A;  1Y6V A;  4GTW A;  4KM4 A;  3M8Y A;  4UPK A;  1AJB A;  4UPI A;  4LRD A;  1ZEF A;  4YR1 A;  1EW9 A;  1P49 A;  2D1G A;  4LQY A;  2W5S A;  4GTY A;  4KJG A;  1E1Z P;  1AJA A;  3WAY A;  3BDG A;  5AJ9 A;  1SHQ A;  1E33 P;  3KD8 A;  1AJD A;  3MK2 A;  1N2K A;  3LXQ A;  1ELX A;  1FSU A;  4TN0 A;  4B56 A;  4GTZ A;  2ZKT A;  1EQJ A;  2G9Y A;  2GSO A;  1AJC A;  3MK0 A;  4UOP A;  5GOV A;  3DPC A;  5HRT A;  1N2L A;  2XRG A;  4LRB A;  3WAX A;  2IUC B;  4GTX A;  5EGE A;  3NKQ A;  2GSU A;  3Q3Q A;  3ED4 A;  4UPH A;  4CXS A;  1KH5 A;  1K7H A;  1ANJ A;  2QZU A;  5LRM A;  4CYR A;  1AUK A;  3UNY A;  5GRR A;  2W8S A;  4MIV A;  3M8Z A;  4CXU A;  1KH7 A;  1KHL A;  1KHN A;  4LRC A;  4LRE A;  4LR8 A;  5DLT A;  4NWJ A;  1ALK A;  4ZGA A;  4FDJ A;  4LRA A;  5LQQ A;  5LIA A;  4CYS A;  4LR2 A;  1ZEB A;  3CMR A;  5KXA A;  1O99 A;  2W5V A;  4MY4 A;  3IGZ B;  3WAV A;  4QAX A;  4N7T A;  3T00 A;  3T01 A;  1ALH A;  5DLW A;  3B5Q A;  4ZG9 A;  2IUC A;  4ZG7 A;  4KAY A;  5L0K A;  2W5Q A;  3DYC A;  3TWZ A;  3TX0 A;  4CXK A;  2X98 A;  3NKR A;  3NKN A;  3TG0 A;  1URB A;  1O98 A;  4ZG6 A;  1ED9 A;  1EW8 A;  3T02 A;  3NKP A;  1E2S P;  2W5R A;  3BDH A;  4FDI A;  4MHX A;  4LR7 A;  4UPL A;  5IJQ A;  1HDH A;  1KHK A;  4LRF A;  5EGH A;  3UN2 A;  4LR9 A;  2ANH A;  1ZED A;  1EW2 A;  1B8J A;  1KHJ A;  5K4P A;  5TJ3 A;  3WAW A;  1ELZ A;  2GSN A;  4KAV A;  2GA3 A;  3SZY A;  5DLV A;  1HJK A;  1Y7A A;  1ANI A;  3IGY B;  3IDD A;  3M7V A;  3NKM A;  4UOO A;  2W5X A;  3E2D A;  2RH6 A;  3M8W A;  1ED8 A;  2W5T A;  1KH9 A;  1SHN A;  2GLQ A;  1ALI A;  2W5W A;  3NKO A;  5L0B A;  3OT9 A;  2VQR A;  2XR9 A;  1EI6 A;  3BDG B;  1ALJ A;  1ELY A;  5LRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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