4MY4A

Crystal structure of phosphoglycerate mutase from staphylococcus aureus.
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
Knots found
sequence length
503
structure length
503
Chain Sequence
KKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Complete catalytic cycle of cofactor-independent phosphoglycerate mutase involves a spring-loaded mechanism
pubmed doi rcsb
source organism Staphylococcus aureus subsp. aureus
molecule tags Isomerase
total genus 192
structure length 503
sequence length 503
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2013-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4my4A01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 4my4A02
1KHLA 4GTYA 2W5VA 4LR2A 5DLTA 1AJDA 1E3CP 3WAYA 3NKQA 5L0KA 4MY4A 3MK1A 4LRCA 2W5WA 1ALKA 3CMRA 2G9YA 5AJ9A 1KH4A 1Y7AA 3WBHA 4KJGA 1ANJA 4KAVA 4LR7A 5EGHA 3OT9A 5C66A 1ALHA 4GTXA 5LQQA 3M8WA 1K7HA 1AJCA 2D1GA 5KXAA 4GTWA 2IUCB 4MHXA 1ZEBA 5K4PA 5GOVA 3NKNA 1N2LA 2W5TA 3B5QA 3M8YA 5L0EA 2IFYA 1HDHA 1KHJA 4UPLA 4CYRA 1FSUA 3Q3QA 4LQYA 3TWZA 1EW2A 1ELYA 3UN5A 2W8DA 3KD8A 5IJQA 4UOOA 3NKPA 2GSNA 4MIVA 4CXSA 2GSOA 1KH9A 3A52A 3MK2A 1EJJA 4FDJA 1E2SP 5TJ3A 3SZZA 4QAXA 1ALIA 3M8ZA 1URBA 3UNYA 5L0BA 1EW8A 1EW9A 4LR8A 3BDFA 4LRDA 2VQRA 3T00A 3T01A 1Y6VA 4KM4A 1ALJA 3NKRA 1ANIA 4LR9A 3TG0A 4CXUA 2W5XA 5LIAA 4ZG6A 3WAWA 3WAXA 2QZUA 4LREA 3BDGA 3T02A 4CYSA 1AJAA 1HQAA 3NVLA 4ZG7A 5DLWA 3IGZB 2X98A 5INHA 3ED4A 5LRMA 2GLQA 2XR9A 4UORA 1O99A 4YR1A 1ZEFA 2RH6A 5HRTA 2GSUA 5GRRA 3WAVA 1KHNA 4KAYA 4UOPA 1URAA 3NKOA 4B56A 4CXKA 1O98A 4TN0A 1ED9A 1ELZA 4UPHA 4ZG9A 2W8SA 4N7TA 4NWXA 3DPCA 3M7VA 1SHQA 5DLVA 3BDHA 4NWJA 2IUCA 3UN2A 1ED8A 2ANHA 2W5QA 2ZKTA 3BDGB 3NKMA 4ZGAA 1N2KA 5LRNA 1P49A 1HJKA 1AJBA 4UPIA 2W5SA 2XRGA 1ZEDA 4KJDA 4LRFA 3MK0A 4LRBA 4LRAA 3E2DA 1KHKA 1AUKA 2W5RA 1ELXA 2GA3A 1E33P 3IGYB 3LXQA 3DYCA 4GTZA 3UN3A 5IJSA 5EGEA 3TX0A 1KH7A 1B8JA 3UO0A 1E1ZP 1KH5A 1SHNA 3IDDA 1EQJA 1EI6A 4FDIA 4UPKA 3SZYA
chains in the Genus database with same CATH superfamily
1KHLA 4GTYA 2W5VA 4LR2A 5DLTA 1AJDA 1E3CP 3WAYA 3NKQA 5L0KA 4MY4A 3MK1A 4LRCA 2W5WA 1ALKA 3CMRA 2G9YA 5AJ9A 1KH4A 1Y7AA 3WBHA 4KJGA 1ANJA 4KAVA 4LR7A 5EGHA 3OT9A 5C66A 1ALHA 4GTXA 5LQQA 3M8WA 1K7HA 1AJCA 2D1GA 5KXAA 4GTWA 2IUCB 4MHXA 1ZEBA 5K4PA 5GOVA 3NKNA 1N2LA 2W5TA 3B5QA 3M8YA 5L0EA 2IFYA 1HDHA 1KHJA 4UPLA 4CYRA 1FSUA 3Q3QA 4LQYA 3TWZA 1EW2A 1ELYA 3UN5A 2W8DA 3KD8A 5IJQA 4UOOA 3NKPA 2GSNA 4MIVA 4CXSA 2GSOA 1KH9A 3A52A 3MK2A 1EJJA 4FDJA 1E2SP 5TJ3A 3SZZA 4QAXA 1ALIA 3M8ZA 1URBA 3UNYA 5L0BA 1EW8A 1EW9A 4LR8A 3BDFA 4LRDA 2VQRA 3T00A 3T01A 1Y6VA 4KM4A 1ALJA 3NKRA 1ANIA 4LR9A 3TG0A 4CXUA 2W5XA 5LIAA 4ZG6A 3WAWA 3WAXA 2QZUA 4LREA 3BDGA 3T02A 4CYSA 1AJAA 1HQAA 3NVLA 4ZG7A 5DLWA 3IGZB 2X98A 5INHA 3ED4A 5LRMA 2GLQA 2XR9A 4UORA 1O99A 4YR1A 1ZEFA 2RH6A 5HRTA 2GSUA 5GRRA 3WAVA 1KHNA 4KAYA 4UOPA 1URAA 3NKOA 4B56A 4CXKA 1O98A 4TN0A 1ED9A 1ELZA 4UPHA 4ZG9A 2W8SA 4N7TA 4NWXA 3DPCA 3M7VA 1SHQA 5DLVA 3BDHA 4NWJA 2IUCA 3UN2A 1ED8A 2ANHA 2W5QA 2ZKTA 3BDGB 3NKMA 4ZGAA 1N2KA 5LRNA 1P49A 1HJKA 1AJBA 4UPIA 2W5SA 2XRGA 1ZEDA 4KJDA 4LRFA 3MK0A 4LRBA 4LRAA 3E2DA 1KHKA 1AUKA 2W5RA 1ELXA 2GA3A 1E33P 3IGYB 3LXQA 3DYCA 4GTZA 3UN3A 5IJSA 5EGEA 3TX0A 1KH7A 1B8JA 3UO0A 1E1ZP 1KH5A 1SHNA 3IDDA 1EQJA 1EI6A 4FDIA 4UPKA 3SZYA
chains in the Genus database with same CATH topology
1KHLA 4GTYA 2W5VA 4LR2A 5DLTA 1AJDA 1E3CP 3WAYA 3NKQA 5L0KA 4MY4A 3MK1A 4LRCA 2W5WA 1ALKA 3CMRA 2G9YA 5AJ9A 1KH4A 1Y7AA 3WBHA 4KJGA 1ANJA 4KAVA 4LR7A 5EGHA 3OT9A 5C66A 1ALHA 4GTXA 5LQQA 3M8WA 1K7HA 1AJCA 2D1GA 5KXAA 4GTWA 2IUCB 4MHXA 1ZEBA 5K4PA 5GOVA 3NKNA 1N2LA 2W5TA 3B5QA 3M8YA 5L0EA 2IFYA 1HDHA 1KHJA 4UPLA 4CYRA 1FSUA 3Q3QA 4LQYA 3TWZA 1EW2A 1ELYA 3UN5A 2W8DA 3KD8A 5IJQA 4UOOA 3NKPA 2GSNA 4MIVA 4CXSA 2GSOA 1KH9A 3A52A 3MK2A 1EJJA 4FDJA 1E2SP 5TJ3A 3SZZA 4QAXA 1ALIA 3M8ZA 1URBA 3UNYA 5L0BA 1EW8A 1EW9A 4LR8A 3BDFA 4LRDA 2VQRA 3T00A 3T01A 1Y6VA 4KM4A 1ALJA 3NKRA 1ANIA 4LR9A 3TG0A 4CXUA 2W5XA 5LIAA 4ZG6A 3WAWA 3WAXA 2QZUA 4LREA 3BDGA 3T02A 4CYSA 1AJAA 1HQAA 3NVLA 4ZG7A 5DLWA 3IGZB 2X98A 5INHA 3ED4A 5LRMA 2GLQA 2XR9A 4UORA 1O99A 4YR1A 1ZEFA 2RH6A 5HRTA 2GSUA 5GRRA 3WAVA 1KHNA 4KAYA 4UOPA 1URAA 3NKOA 4B56A 4CXKA 1O98A 4TN0A 1ED9A 1ELZA 4UPHA 4ZG9A 2W8SA 4N7TA 4NWXA 3DPCA 3M7VA 1SHQA 5DLVA 3BDHA 4NWJA 2IUCA 3UN2A 1ED8A 2ANHA 2W5QA 2ZKTA 3BDGB 3NKMA 4ZGAA 1N2KA 5LRNA 1P49A 1HJKA 1AJBA 4UPIA 2W5SA 2XRGA 1ZEDA 4KJDA 4LRFA 3MK0A 4LRBA 4LRAA 3E2DA 1KHKA 1AUKA 2W5RA 1ELXA 2GA3A 1E33P 3IGYB 3LXQA 3DYCA 4GTZA 3UN3A 5IJSA 5EGEA 3TX0A 1KH7A 1B8JA 3UO0A 1E1ZP 1KH5A 1SHNA 3IDDA 1EQJA 1EI6A 4FDIA 4UPKA 3SZYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KHL A;  4GTY A;  2W5V A;  4LR2 A;  5DLT A;  1AJD A;  1E3C P;  3WAY A;  3NKQ A;  5L0K A;  4MY4 A;  3MK1 A;  4LRC A;  2W5W A;  1ALK A;  3CMR A;  2G9Y A;  5AJ9 A;  1KH4 A;  1Y7A A;  3WBH A;  4KJG A;  1ANJ A;  4KAV A;  4LR7 A;  5EGH A;  3OT9 A;  5C66 A;  1ALH A;  4GTX A;  5LQQ A;  3M8W A;  1K7H A;  1AJC A;  2D1G A;  5KXA A;  4GTW A;  2IUC B;  4MHX A;  1ZEB A;  5K4P A;  5GOV A;  3NKN A;  1N2L A;  2W5T A;  3B5Q A;  3M8Y A;  5L0E A;  2IFY A;  1HDH A;  1KHJ A;  4UPL A;  4CYR A;  1FSU A;  3Q3Q A;  4LQY A;  3TWZ A;  1EW2 A;  1ELY A;  3UN5 A;  2W8D A;  3KD8 A;  5IJQ A;  4UOO A;  3NKP A;  2GSN A;  4MIV A;  4CXS A;  2GSO A;  1KH9 A;  3A52 A;  3MK2 A;  1EJJ A;  4FDJ A;  1E2S P;  5TJ3 A;  3SZZ A;  4QAX A;  1ALI A;  3M8Z A;  1URB A;  3UNY A;  5L0B A;  1EW8 A;  1EW9 A;  4LR8 A;  3BDF A;  4LRD A;  2VQR A;  3T00 A;  3T01 A;  1Y6V A;  4KM4 A;  1ALJ A;  3NKR A;  1ANI A;  4LR9 A;  3TG0 A;  4CXU A;  2W5X A;  5LIA A;  4ZG6 A;  3WAW A;  3WAX A;  2QZU A;  4LRE A;  3BDG A;  3T02 A;  4CYS A;  1AJA A;  1HQA A;  3NVL A;  4ZG7 A;  5DLW A;  3IGZ B;  2X98 A;  5INH A;  3ED4 A;  5LRM A;  2GLQ A;  2XR9 A;  4UOR A;  1O99 A;  4YR1 A;  1ZEF A;  2RH6 A;  5HRT A;  2GSU A;  5GRR A;  3WAV A;  1KHN A;  4KAY A;  4UOP A;  1URA A;  3NKO A;  4B56 A;  4CXK A;  1O98 A;  4TN0 A;  1ED9 A;  1ELZ A;  4UPH A;  4ZG9 A;  2W8S A;  4N7T A;  4NWX A;  3DPC A;  3M7V A;  1SHQ A;  5DLV A;  3BDH A;  4NWJ A;  2IUC A;  3UN2 A;  1ED8 A;  2ANH A;  2W5Q A;  2ZKT A;  3BDG B;  3NKM A;  4ZGA A;  1N2K A;  5LRN A;  1P49 A;  1HJK A;  1AJB A;  4UPI A;  2W5S A;  2XRG A;  1ZED A;  4KJD A;  4LRF A;  3MK0 A;  4LRB A;  4LRA A;  3E2D A;  1KHK A;  1AUK A;  2W5R A;  1ELX A;  2GA3 A;  1E33 P;  3IGY B;  3LXQ A;  3DYC A;  4GTZ A;  3UN3 A;  5IJS A;  5EGE A;  3TX0 A;  1KH7 A;  1B8J A;  3UO0 A;  1E1Z P;  1KH5 A;  1SHN A;  3IDD A;  1EQJ A;  1EI6 A;  4FDI A;  4UPK A;  3SZY A; 
#chains in the Genus database with same CATH topology
 1KHL A;  4GTY A;  2W5V A;  4LR2 A;  5DLT A;  1AJD A;  1E3C P;  3WAY A;  3NKQ A;  5L0K A;  4MY4 A;  3MK1 A;  4LRC A;  2W5W A;  1ALK A;  3CMR A;  2G9Y A;  5AJ9 A;  1KH4 A;  1Y7A A;  3WBH A;  4KJG A;  1ANJ A;  4KAV A;  4LR7 A;  5EGH A;  3OT9 A;  5C66 A;  1ALH A;  4GTX A;  5LQQ A;  3M8W A;  1K7H A;  1AJC A;  2D1G A;  5KXA A;  4GTW A;  2IUC B;  4MHX A;  1ZEB A;  5K4P A;  5GOV A;  3NKN A;  1N2L A;  2W5T A;  3B5Q A;  3M8Y A;  5L0E A;  2IFY A;  1HDH A;  1KHJ A;  4UPL A;  4CYR A;  1FSU A;  3Q3Q A;  4LQY A;  3TWZ A;  1EW2 A;  1ELY A;  3UN5 A;  2W8D A;  3KD8 A;  5IJQ A;  4UOO A;  3NKP A;  2GSN A;  4MIV A;  4CXS A;  2GSO A;  1KH9 A;  3A52 A;  3MK2 A;  1EJJ A;  4FDJ A;  1E2S P;  5TJ3 A;  3SZZ A;  4QAX A;  1ALI A;  3M8Z A;  1URB A;  3UNY A;  5L0B A;  1EW8 A;  1EW9 A;  4LR8 A;  3BDF A;  4LRD A;  2VQR A;  3T00 A;  3T01 A;  1Y6V A;  4KM4 A;  1ALJ A;  3NKR A;  1ANI A;  4LR9 A;  3TG0 A;  4CXU A;  2W5X A;  5LIA A;  4ZG6 A;  3WAW A;  3WAX A;  2QZU A;  4LRE A;  3BDG A;  3T02 A;  4CYS A;  1AJA A;  1HQA A;  3NVL A;  4ZG7 A;  5DLW A;  3IGZ B;  2X98 A;  5INH A;  3ED4 A;  5LRM A;  2GLQ A;  2XR9 A;  4UOR A;  1O99 A;  4YR1 A;  1ZEF A;  2RH6 A;  5HRT A;  2GSU A;  5GRR A;  3WAV A;  1KHN A;  4KAY A;  4UOP A;  1URA A;  3NKO A;  4B56 A;  4CXK A;  1O98 A;  4TN0 A;  1ED9 A;  1ELZ A;  4UPH A;  4ZG9 A;  2W8S A;  4N7T A;  4NWX A;  3DPC A;  3M7V A;  1SHQ A;  5DLV A;  3BDH A;  4NWJ A;  2IUC A;  3UN2 A;  1ED8 A;  2ANH A;  2W5Q A;  2ZKT A;  3BDG B;  3NKM A;  4ZGA A;  1N2K A;  5LRN A;  1P49 A;  1HJK A;  1AJB A;  4UPI A;  2W5S A;  2XRG A;  1ZED A;  4KJD A;  4LRF A;  3MK0 A;  4LRB A;  4LRA A;  3E2D A;  1KHK A;  1AUK A;  2W5R A;  1ELX A;  2GA3 A;  1E33 P;  3IGY B;  3LXQ A;  3DYC A;  4GTZ A;  3UN3 A;  5IJS A;  5EGE A;  3TX0 A;  1KH7 A;  1B8J A;  3UO0 A;  1E1Z P;  1KH5 A;  1SHN A;  3IDD A;  1EQJ A;  1EI6 A;  4FDI A;  4UPK A;  3SZY A; 
#chains in the Genus database with same CATH homology
 1KHL A;  4GTY A;  2W5V A;  4LR2 A;  5DLT A;  1AJD A;  1E3C P;  3WAY A;  3NKQ A;  5L0K A;  4MY4 A;  3MK1 A;  4LRC A;  2W5W A;  1ALK A;  3CMR A;  2G9Y A;  5AJ9 A;  1KH4 A;  1Y7A A;  3WBH A;  4KJG A;  1ANJ A;  4KAV A;  4LR7 A;  5EGH A;  3OT9 A;  5C66 A;  1ALH A;  4GTX A;  5LQQ A;  3M8W A;  1K7H A;  1AJC A;  2D1G A;  5KXA A;  4GTW A;  2IUC B;  4MHX A;  1ZEB A;  5K4P A;  5GOV A;  3NKN A;  1N2L A;  2W5T A;  3B5Q A;  3M8Y A;  5L0E A;  2IFY A;  1HDH A;  1KHJ A;  4UPL A;  4CYR A;  1FSU A;  3Q3Q A;  4LQY A;  3TWZ A;  1EW2 A;  1ELY A;  3UN5 A;  2W8D A;  3KD8 A;  5IJQ A;  4UOO A;  3NKP A;  2GSN A;  4MIV A;  4CXS A;  2GSO A;  1KH9 A;  3A52 A;  3MK2 A;  1EJJ A;  4FDJ A;  1E2S P;  5TJ3 A;  3SZZ A;  4QAX A;  1ALI A;  3M8Z A;  1URB A;  3UNY A;  5L0B A;  1EW8 A;  1EW9 A;  4LR8 A;  3BDF A;  4LRD A;  2VQR A;  3T00 A;  3T01 A;  1Y6V A;  4KM4 A;  1ALJ A;  3NKR A;  1ANI A;  4LR9 A;  3TG0 A;  4CXU A;  2W5X A;  5LIA A;  4ZG6 A;  3WAW A;  3WAX A;  2QZU A;  4LRE A;  3BDG A;  3T02 A;  4CYS A;  1AJA A;  1HQA A;  3NVL A;  4ZG7 A;  5DLW A;  3IGZ B;  2X98 A;  5INH A;  3ED4 A;  5LRM A;  2GLQ A;  2XR9 A;  4UOR A;  1O99 A;  4YR1 A;  1ZEF A;  2RH6 A;  5HRT A;  2GSU A;  5GRR A;  3WAV A;  1KHN A;  4KAY A;  4UOP A;  1URA A;  3NKO A;  4B56 A;  4CXK A;  1O98 A;  4TN0 A;  1ED9 A;  1ELZ A;  4UPH A;  4ZG9 A;  2W8S A;  4N7T A;  4NWX A;  3DPC A;  3M7V A;  1SHQ A;  5DLV A;  3BDH A;  4NWJ A;  2IUC A;  3UN2 A;  1ED8 A;  2ANH A;  2W5Q A;  2ZKT A;  3BDG B;  3NKM A;  4ZGA A;  1N2K A;  5LRN A;  1P49 A;  1HJK A;  1AJB A;  4UPI A;  2W5S A;  2XRG A;  1ZED A;  4KJD A;  4LRF A;  3MK0 A;  4LRB A;  4LRA A;  3E2D A;  1KHK A;  1AUK A;  2W5R A;  1ELX A;  2GA3 A;  1E33 P;  3IGY B;  3LXQ A;  3DYC A;  4GTZ A;  3UN3 A;  5IJS A;  5EGE A;  3TX0 A;  1KH7 A;  1B8J A;  3UO0 A;  1E1Z P;  1KH5 A;  1SHN A;  3IDD A;  1EQJ A;  1EI6 A;  4FDI A;  4UPK A;  3SZY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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