4MY4A

Crystal structure of phosphoglycerate mutase from staphylococcus aureus.
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
Knots found
sequence length
503
structure length
503
Chain Sequence
KKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Complete catalytic cycle of cofactor-independent phosphoglycerate mutase involves a spring-loaded mechanism
pubmed doi rcsb
source organism Staphylococcus aureus subsp. aureus
total genus 192
structure length 503
sequence length 503
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2013-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4my4A01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 4my4A02
2GA3A 1SHNA 1ELXA 1KHJA 1URAA 1HDHA 2W8SA 4FDIA 5EGHA 3MK2A 4CYRA 5HRTA 3MK1A 1ED8A 1KHKA 1Y6VA 4KAVA 2IUCA 5KXAA 1HQAA 3T00A 1URBA 4ZG9A 4LRAA 2W5VA 4KJDA 3BDGA 4QAXA 4LR7A 4CXUA 2GLQA 1O99A 3DYCA 1HJKA 3NKMA 4GTXA 1ED9A 3M7VA 4LQYA 3IGYB 4LRFA 1E33P 3BDFA 5L0EA 4LR8A 1KH7A 3NKQA 4MY4A 2QZUA 5LIAA 2W5WA 5GOVA 4MIVA 3IGZB 1AJCA 3E2DA 1ALJA 2IFYA 3UNYA 1SHQA 2XRGA 1P49A 1K7HA 1E2SP 4ZG6A 4GTYA 1ELYA 2W8DA 2W5RA 1N2LA 4YR1A 1KH5A 5DLVA 2XR9A 1AUKA 2W5XA 1EI6A 3NVLA 3UN2A 3NKNA 4CXKA 4UORA 5AJ9A 2W5TA 4KJGA 4LREA 1EW9A 5C66A 4NWXA 1ALIA 4NWJA 3NKOA 3UN3A 1ALHA 1FSUA 3M8YA 4ZGAA 5L0BA 2IUCB 4GTWA 4UOOA 4LRBA 3BDGB 3T01A 4B56A 1N2KA 5LRMA 4MHXA 4UOPA 1KHNA 1ELZA 2VQRA 1ZEDA 3CMRA 5K4PA 4LR9A 3BDHA 3TX0A 2W5QA 5IJSA 3Q3QA 5L0KA 4LRCA 1E1ZP 5DLWA 1ALKA 1KHLA 4TN0A 3WAXA 1KH9A 1AJDA 2GSNA 1E3CP 4CYSA 4KM4A 1EQJA 1EJJA 1EW8A 5TJ3A 1ZEFA 3KD8A 2X98A 3TWZA 3WAVA 3UO0A 3A52A 3UN5A 4LR2A 1AJBA 4UPKA 1Y7AA 3WBHA 3M8WA 5EGEA 3M8ZA 3WAYA 4UPLA 4UPIA 4UPHA 5GRRA 4KAYA 1AJAA 3NKRA 3T02A 4CXSA 5LQQA 2ZKTA 3LXQA 2RH6A 5IJQA 1ZEBA 3TG0A 3MK0A 1B8JA 3IDDA 3NKPA 1O98A 3WAWA 3DPCA 5DLTA 3ED4A 4FDJA 3SZZA 4GTZA 3OT9A 3SZYA 5LRNA 2D1GA 4LRDA 2W5SA 2G9YA 2GSUA 1ANIA 1EW2A 2ANHA 1ANJA 2GSOA 4ZG7A 4N7TA 3B5QA 5INHA 1KH4A
chains in the Genus database with same CATH superfamily
2GA3A 1SHNA 1ELXA 1KHJA 1URAA 1HDHA 2W8SA 4FDIA 5EGHA 3MK2A 4CYRA 5HRTA 3MK1A 1ED8A 1KHKA 1Y6VA 4KAVA 2IUCA 5KXAA 1HQAA 3T00A 1URBA 4ZG9A 4LRAA 2W5VA 4KJDA 3BDGA 4QAXA 4LR7A 4CXUA 2GLQA 1O99A 3DYCA 1HJKA 3NKMA 4GTXA 1ED9A 3M7VA 4LQYA 3IGYB 4LRFA 1E33P 3BDFA 5L0EA 4LR8A 1KH7A 3NKQA 4MY4A 2QZUA 5LIAA 2W5WA 5GOVA 4MIVA 3IGZB 1AJCA 3E2DA 1ALJA 2IFYA 3UNYA 1SHQA 2XRGA 1P49A 1K7HA 1E2SP 4ZG6A 4GTYA 1ELYA 2W8DA 2W5RA 1N2LA 4YR1A 1KH5A 5DLVA 2XR9A 1AUKA 2W5XA 1EI6A 3NVLA 3UN2A 3NKNA 4CXKA 4UORA 5AJ9A 2W5TA 4KJGA 4LREA 1EW9A 5C66A 4NWXA 1ALIA 4NWJA 3NKOA 3UN3A 1ALHA 1FSUA 3M8YA 4ZGAA 5L0BA 2IUCB 4GTWA 4UOOA 4LRBA 3BDGB 3T01A 4B56A 1N2KA 5LRMA 4MHXA 4UOPA 1KHNA 1ELZA 2VQRA 1ZEDA 3CMRA 5K4PA 4LR9A 3BDHA 3TX0A 2W5QA 5IJSA 3Q3QA 5L0KA 4LRCA 1E1ZP 5DLWA 1ALKA 1KHLA 4TN0A 3WAXA 1KH9A 1AJDA 2GSNA 1E3CP 4CYSA 4KM4A 1EQJA 1EJJA 1EW8A 5TJ3A 1ZEFA 3KD8A 2X98A 3TWZA 3WAVA 3UO0A 3A52A 3UN5A 4LR2A 1AJBA 4UPKA 1Y7AA 3WBHA 3M8WA 5EGEA 3M8ZA 3WAYA 4UPLA 4UPIA 4UPHA 5GRRA 4KAYA 1AJAA 3NKRA 3T02A 4CXSA 5LQQA 2ZKTA 3LXQA 2RH6A 5IJQA 1ZEBA 3TG0A 3MK0A 1B8JA 3IDDA 3NKPA 1O98A 3WAWA 3DPCA 5DLTA 3ED4A 4FDJA 3SZZA 4GTZA 3OT9A 3SZYA 5LRNA 2D1GA 4LRDA 2W5SA 2G9YA 2GSUA 1ANIA 1EW2A 2ANHA 1ANJA 2GSOA 4ZG7A 4N7TA 3B5QA 5INHA 1KH4A
chains in the Genus database with same CATH topology
2GA3A 1SHNA 1ELXA 1KHJA 1URAA 1HDHA 2W8SA 4FDIA 5EGHA 3MK2A 4CYRA 5HRTA 3MK1A 1ED8A 1KHKA 1Y6VA 4KAVA 2IUCA 5KXAA 1HQAA 3T00A 1URBA 4ZG9A 4LRAA 2W5VA 4KJDA 3BDGA 4QAXA 4LR7A 4CXUA 2GLQA 1O99A 3DYCA 1HJKA 3NKMA 4GTXA 1ED9A 3M7VA 4LQYA 3IGYB 4LRFA 1E33P 3BDFA 5L0EA 4LR8A 1KH7A 3NKQA 4MY4A 2QZUA 5LIAA 2W5WA 5GOVA 4MIVA 3IGZB 1AJCA 3E2DA 1ALJA 2IFYA 3UNYA 1SHQA 2XRGA 1P49A 1K7HA 1E2SP 4ZG6A 4GTYA 1ELYA 2W8DA 2W5RA 1N2LA 4YR1A 1KH5A 5DLVA 2XR9A 1AUKA 2W5XA 1EI6A 3NVLA 3UN2A 3NKNA 4CXKA 4UORA 5AJ9A 2W5TA 4KJGA 4LREA 1EW9A 5C66A 4NWXA 1ALIA 4NWJA 3NKOA 3UN3A 1ALHA 1FSUA 3M8YA 4ZGAA 5L0BA 2IUCB 4GTWA 4UOOA 4LRBA 3BDGB 3T01A 4B56A 1N2KA 5LRMA 4MHXA 4UOPA 1KHNA 1ELZA 2VQRA 1ZEDA 3CMRA 5K4PA 4LR9A 3BDHA 3TX0A 2W5QA 5IJSA 3Q3QA 5L0KA 4LRCA 1E1ZP 5DLWA 1ALKA 1KHLA 4TN0A 3WAXA 1KH9A 1AJDA 2GSNA 1E3CP 4CYSA 4KM4A 1EQJA 1EJJA 1EW8A 5TJ3A 1ZEFA 3KD8A 2X98A 3TWZA 3WAVA 3UO0A 3A52A 3UN5A 4LR2A 1AJBA 4UPKA 1Y7AA 3WBHA 3M8WA 5EGEA 3M8ZA 3WAYA 4UPLA 4UPIA 4UPHA 5GRRA 4KAYA 1AJAA 3NKRA 3T02A 4CXSA 5LQQA 2ZKTA 3LXQA 2RH6A 5IJQA 1ZEBA 3TG0A 3MK0A 1B8JA 3IDDA 3NKPA 1O98A 3WAWA 3DPCA 5DLTA 3ED4A 4FDJA 3SZZA 4GTZA 3OT9A 3SZYA 5LRNA 2D1GA 4LRDA 2W5SA 2G9YA 2GSUA 1ANIA 1EW2A 2ANHA 1ANJA 2GSOA 4ZG7A 4N7TA 3B5QA 5INHA 1KH4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GA3 A;  1SHN A;  1ELX A;  1KHJ A;  1URA A;  1HDH A;  2W8S A;  4FDI A;  5EGH A;  3MK2 A;  4CYR A;  5HRT A;  3MK1 A;  1ED8 A;  1KHK A;  1Y6V A;  4KAV A;  2IUC A;  5KXA A;  1HQA A;  3T00 A;  1URB A;  4ZG9 A;  4LRA A;  2W5V A;  4KJD A;  3BDG A;  4QAX A;  4LR7 A;  4CXU A;  2GLQ A;  1O99 A;  3DYC A;  1HJK A;  3NKM A;  4GTX A;  1ED9 A;  3M7V A;  4LQY A;  3IGY B;  4LRF A;  1E33 P;  3BDF A;  5L0E A;  4LR8 A;  1KH7 A;  3NKQ A;  4MY4 A;  2QZU A;  5LIA A;  2W5W A;  5GOV A;  4MIV A;  3IGZ B;  1AJC A;  3E2D A;  1ALJ A;  2IFY A;  3UNY A;  1SHQ A;  2XRG A;  1P49 A;  1K7H A;  1E2S P;  4ZG6 A;  4GTY A;  1ELY A;  2W8D A;  2W5R A;  1N2L A;  4YR1 A;  1KH5 A;  5DLV A;  2XR9 A;  1AUK A;  2W5X A;  1EI6 A;  3NVL A;  3UN2 A;  3NKN A;  4CXK A;  4UOR A;  5AJ9 A;  2W5T A;  4KJG A;  4LRE A;  1EW9 A;  5C66 A;  4NWX A;  1ALI A;  4NWJ A;  3NKO A;  3UN3 A;  1ALH A;  1FSU A;  3M8Y A;  4ZGA A;  5L0B A;  2IUC B;  4GTW A;  4UOO A;  4LRB A;  3BDG B;  3T01 A;  4B56 A;  1N2K A;  5LRM A;  4MHX A;  4UOP A;  1KHN A;  1ELZ A;  2VQR A;  1ZED A;  3CMR A;  5K4P A;  4LR9 A;  3BDH A;  3TX0 A;  2W5Q A;  5IJS A;  3Q3Q A;  5L0K A;  4LRC A;  1E1Z P;  5DLW A;  1ALK A;  1KHL A;  4TN0 A;  3WAX A;  1KH9 A;  1AJD A;  2GSN A;  1E3C P;  4CYS A;  4KM4 A;  1EQJ A;  1EJJ A;  1EW8 A;  5TJ3 A;  1ZEF A;  3KD8 A;  2X98 A;  3TWZ A;  3WAV A;  3UO0 A;  3A52 A;  3UN5 A;  4LR2 A;  1AJB A;  4UPK A;  1Y7A A;  3WBH A;  3M8W A;  5EGE A;  3M8Z A;  3WAY A;  4UPL A;  4UPI A;  4UPH A;  5GRR A;  4KAY A;  1AJA A;  3NKR A;  3T02 A;  4CXS A;  5LQQ A;  2ZKT A;  3LXQ A;  2RH6 A;  5IJQ A;  1ZEB A;  3TG0 A;  3MK0 A;  1B8J A;  3IDD A;  3NKP A;  1O98 A;  3WAW A;  3DPC A;  5DLT A;  3ED4 A;  4FDJ A;  3SZZ A;  4GTZ A;  3OT9 A;  3SZY A;  5LRN A;  2D1G A;  4LRD A;  2W5S A;  2G9Y A;  2GSU A;  1ANI A;  1EW2 A;  2ANH A;  1ANJ A;  2GSO A;  4ZG7 A;  4N7T A;  3B5Q A;  5INH A;  1KH4 A; 
#chains in the Genus database with same CATH topology
 2GA3 A;  1SHN A;  1ELX A;  1KHJ A;  1URA A;  1HDH A;  2W8S A;  4FDI A;  5EGH A;  3MK2 A;  4CYR A;  5HRT A;  3MK1 A;  1ED8 A;  1KHK A;  1Y6V A;  4KAV A;  2IUC A;  5KXA A;  1HQA A;  3T00 A;  1URB A;  4ZG9 A;  4LRA A;  2W5V A;  4KJD A;  3BDG A;  4QAX A;  4LR7 A;  4CXU A;  2GLQ A;  1O99 A;  3DYC A;  1HJK A;  3NKM A;  4GTX A;  1ED9 A;  3M7V A;  4LQY A;  3IGY B;  4LRF A;  1E33 P;  3BDF A;  5L0E A;  4LR8 A;  1KH7 A;  3NKQ A;  4MY4 A;  2QZU A;  5LIA A;  2W5W A;  5GOV A;  4MIV A;  3IGZ B;  1AJC A;  3E2D A;  1ALJ A;  2IFY A;  3UNY A;  1SHQ A;  2XRG A;  1P49 A;  1K7H A;  1E2S P;  4ZG6 A;  4GTY A;  1ELY A;  2W8D A;  2W5R A;  1N2L A;  4YR1 A;  1KH5 A;  5DLV A;  2XR9 A;  1AUK A;  2W5X A;  1EI6 A;  3NVL A;  3UN2 A;  3NKN A;  4CXK A;  4UOR A;  5AJ9 A;  2W5T A;  4KJG A;  4LRE A;  1EW9 A;  5C66 A;  4NWX A;  1ALI A;  4NWJ A;  3NKO A;  3UN3 A;  1ALH A;  1FSU A;  3M8Y A;  4ZGA A;  5L0B A;  2IUC B;  4GTW A;  4UOO A;  4LRB A;  3BDG B;  3T01 A;  4B56 A;  1N2K A;  5LRM A;  4MHX A;  4UOP A;  1KHN A;  1ELZ A;  2VQR A;  1ZED A;  3CMR A;  5K4P A;  4LR9 A;  3BDH A;  3TX0 A;  2W5Q A;  5IJS A;  3Q3Q A;  5L0K A;  4LRC A;  1E1Z P;  5DLW A;  1ALK A;  1KHL A;  4TN0 A;  3WAX A;  1KH9 A;  1AJD A;  2GSN A;  1E3C P;  4CYS A;  4KM4 A;  1EQJ A;  1EJJ A;  1EW8 A;  5TJ3 A;  1ZEF A;  3KD8 A;  2X98 A;  3TWZ A;  3WAV A;  3UO0 A;  3A52 A;  3UN5 A;  4LR2 A;  1AJB A;  4UPK A;  1Y7A A;  3WBH A;  3M8W A;  5EGE A;  3M8Z A;  3WAY A;  4UPL A;  4UPI A;  4UPH A;  5GRR A;  4KAY A;  1AJA A;  3NKR A;  3T02 A;  4CXS A;  5LQQ A;  2ZKT A;  3LXQ A;  2RH6 A;  5IJQ A;  1ZEB A;  3TG0 A;  3MK0 A;  1B8J A;  3IDD A;  3NKP A;  1O98 A;  3WAW A;  3DPC A;  5DLT A;  3ED4 A;  4FDJ A;  3SZZ A;  4GTZ A;  3OT9 A;  3SZY A;  5LRN A;  2D1G A;  4LRD A;  2W5S A;  2G9Y A;  2GSU A;  1ANI A;  1EW2 A;  2ANH A;  1ANJ A;  2GSO A;  4ZG7 A;  4N7T A;  3B5Q A;  5INH A;  1KH4 A; 
#chains in the Genus database with same CATH homology
 2GA3 A;  1SHN A;  1ELX A;  1KHJ A;  1URA A;  1HDH A;  2W8S A;  4FDI A;  5EGH A;  3MK2 A;  4CYR A;  5HRT A;  3MK1 A;  1ED8 A;  1KHK A;  1Y6V A;  4KAV A;  2IUC A;  5KXA A;  1HQA A;  3T00 A;  1URB A;  4ZG9 A;  4LRA A;  2W5V A;  4KJD A;  3BDG A;  4QAX A;  4LR7 A;  4CXU A;  2GLQ A;  1O99 A;  3DYC A;  1HJK A;  3NKM A;  4GTX A;  1ED9 A;  3M7V A;  4LQY A;  3IGY B;  4LRF A;  1E33 P;  3BDF A;  5L0E A;  4LR8 A;  1KH7 A;  3NKQ A;  4MY4 A;  2QZU A;  5LIA A;  2W5W A;  5GOV A;  4MIV A;  3IGZ B;  1AJC A;  3E2D A;  1ALJ A;  2IFY A;  3UNY A;  1SHQ A;  2XRG A;  1P49 A;  1K7H A;  1E2S P;  4ZG6 A;  4GTY A;  1ELY A;  2W8D A;  2W5R A;  1N2L A;  4YR1 A;  1KH5 A;  5DLV A;  2XR9 A;  1AUK A;  2W5X A;  1EI6 A;  3NVL A;  3UN2 A;  3NKN A;  4CXK A;  4UOR A;  5AJ9 A;  2W5T A;  4KJG A;  4LRE A;  1EW9 A;  5C66 A;  4NWX A;  1ALI A;  4NWJ A;  3NKO A;  3UN3 A;  1ALH A;  1FSU A;  3M8Y A;  4ZGA A;  5L0B A;  2IUC B;  4GTW A;  4UOO A;  4LRB A;  3BDG B;  3T01 A;  4B56 A;  1N2K A;  5LRM A;  4MHX A;  4UOP A;  1KHN A;  1ELZ A;  2VQR A;  1ZED A;  3CMR A;  5K4P A;  4LR9 A;  3BDH A;  3TX0 A;  2W5Q A;  5IJS A;  3Q3Q A;  5L0K A;  4LRC A;  1E1Z P;  5DLW A;  1ALK A;  1KHL A;  4TN0 A;  3WAX A;  1KH9 A;  1AJD A;  2GSN A;  1E3C P;  4CYS A;  4KM4 A;  1EQJ A;  1EJJ A;  1EW8 A;  5TJ3 A;  1ZEF A;  3KD8 A;  2X98 A;  3TWZ A;  3WAV A;  3UO0 A;  3A52 A;  3UN5 A;  4LR2 A;  1AJB A;  4UPK A;  1Y7A A;  3WBH A;  3M8W A;  5EGE A;  3M8Z A;  3WAY A;  4UPL A;  4UPI A;  4UPH A;  5GRR A;  4KAY A;  1AJA A;  3NKR A;  3T02 A;  4CXS A;  5LQQ A;  2ZKT A;  3LXQ A;  2RH6 A;  5IJQ A;  1ZEB A;  3TG0 A;  3MK0 A;  1B8J A;  3IDD A;  3NKP A;  1O98 A;  3WAW A;  3DPC A;  5DLT A;  3ED4 A;  4FDJ A;  3SZZ A;  4GTZ A;  3OT9 A;  3SZY A;  5LRN A;  2D1G A;  4LRD A;  2W5S A;  2G9Y A;  2GSU A;  1ANI A;  1EW2 A;  2ANH A;  1ANJ A;  2GSO A;  4ZG7 A;  4N7T A;  3B5Q A;  5INH A;  1KH4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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