5LRNA

Structure of mono-zinc mcr-1 in p21 space group
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
325
structure length
324
Chain Sequence
GPTIYHAKDAVQATKPDMRKPRLVVFVVGETARADHVSFNGYERDTFPQLAKIDGVTNFSNVTSCGTSAYSVPCMFSYLGADEYDVDTAKYQENVLDTLDRLGVSILWRDNNSDSKGVMDKLPKAQFADYKSATNNAICNTNPYNECRDVGMLVGLDDFVAANNGKDMLIMLHQMGNHGPAYFKRYDEKFAKFTPVCEGNELAKCEHQSLINAYDNALLATDDFIAQSIQWLQTHSNAYDVSMLYVSDHGESLGENGVYLHGMPNAFAPKEQRSVPAFFWTDKQTGITPMATDTVLTHDAITPTLLKLFDVTADKVKDRTAFIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Escherichia coli
publication title Insights into the Mechanistic Basis of Plasmid-Mediated Colistin Resistance from Crystal Structures of the Catalytic Domain of MCR-1.
pubmed doi rcsb
molecule keywords Phosphatidylethanolamine transferase Mcr-1
total genus 123
structure length 324
sequence length 325
chains with identical sequence B
ec nomenclature ec 2.7.-.-:
pdb deposition date 2016-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 5lrnA00
1ZEFA 2IUCA 1EW9A 4UOPA 5DLVA 4LR9A 4MHXA 5EGEA 1FSUA 3NVLA 2ANHA 1E1ZP 4KM4A 3M8YA 3NKOA 1KHNA 1Y7AA 4LR8A 5EGHA 1SHQA 3DPCA 4LREA 2RH6A 3MK0A 2W8DA 1AJDA 4N7TA 4UORA 5L0BA 1ZEDA 4GTWA 4LRBA 1ED9A 1HQAA 4UPIA 3BDGA 4ZG7A 3WAVA 3BDHA 5INHA 4ZG9A 4YR1A 1SHNA 4CXKA 5LRNA 2GSOA 4KAYA 3BDGB 3T01A 3T02A 5LIAA 1EI6A 3NKNA 3E2DA 5DLWA 3TG0A 2W8SA 5TJ3A 3NKRA 3OT9A 2IUCB 3LXQA 4GTZA 4MY4A 5IJQA 5L0KA 3KD8A 3UN3A 1E3CP 4LR2A 4LQYA 5LRMA 1ANIA 3DYCA 1ANJA 2VQRA 1N2LA 1O98A 4FDIA 1ALIA 2D1GA 1P49A 1AJCA 4TN0A 5HRTA 4NWXA 5GOVA 3B5QA 4KJGA 3IGZB 1HJKA 4ZG6A 1O99A 3NKPA 2G9YA 1KHJA 5AJ9A 3UN5A 1E2SP 1E33P 3UO0A 3WAXA 1N2KA 1URBA 1AUKA 3SZYA 4B56A 1ELXA 2GA3A 5C66A 1KH5A 3A52A 4CXUA 1ZEBA 4KJDA 5GRRA 1K7HA 2W5QA 3UNYA 1ALHA 1HDHA 2W5VA 5LQQA 3IDDA 4MIVA 1ED8A 1EJJA 2IFYA 2W5XA 1ALKA 5KXAA 3UN2A 3T00A 2GSNA 2W5TA 4LRFA 2GSUA 4LRCA 4LRDA 4FDJA 5DLTA 1KH7A 3ED4A 4UOOA 3MK1A 3WAYA 3IGYB 3MK2A 4KAVA 1ALJA 1KHLA 1EW8A 4UPLA 1KH9A 5IJSA 1EQJA 5L0EA 3TX0A 3M8ZA 2XRGA 1KH4A 2XR9A 3NKMA 4UPKA 2X98A 4CYSA 2ZKTA 1AJBA 2W5SA 3WBHA 3BDFA 4LRAA 4QAXA 3NKQA 4CYRA 1B8JA 1Y6VA 1ELZA 1KHKA 1URAA 4UPHA 3WAWA 3M7VA 4CXSA 4LR7A 2W5WA 3M8WA 3TWZA 2GLQA 4NWJA 3SZZA 1AJAA 2W5RA 4GTXA 2QZUA 5K4PA 1ELYA 3CMRA 1EW2A 4ZGAA 3Q3QA 4GTYA
chains in the Genus database with same CATH superfamily
1ZEFA 2IUCA 1EW9A 4UOPA 5DLVA 4LR9A 4MHXA 5EGEA 1FSUA 3NVLA 2ANHA 1E1ZP 4KM4A 3M8YA 3NKOA 1KHNA 1Y7AA 4LR8A 5EGHA 1SHQA 3DPCA 4LREA 2RH6A 3MK0A 2W8DA 1AJDA 4N7TA 4UORA 5L0BA 1ZEDA 4GTWA 4LRBA 1ED9A 1HQAA 4UPIA 3BDGA 4ZG7A 3WAVA 3BDHA 5INHA 4ZG9A 4YR1A 1SHNA 4CXKA 5LRNA 2GSOA 4KAYA 3BDGB 3T01A 3T02A 5LIAA 1EI6A 3NKNA 3E2DA 5DLWA 3TG0A 2W8SA 5TJ3A 3NKRA 3OT9A 2IUCB 3LXQA 4GTZA 4MY4A 5IJQA 5L0KA 3KD8A 3UN3A 1E3CP 4LR2A 4LQYA 5LRMA 1ANIA 3DYCA 1ANJA 2VQRA 1N2LA 1O98A 4FDIA 1ALIA 2D1GA 1P49A 1AJCA 4TN0A 5HRTA 4NWXA 5GOVA 3B5QA 4KJGA 3IGZB 1HJKA 4ZG6A 1O99A 3NKPA 2G9YA 1KHJA 5AJ9A 3UN5A 1E2SP 1E33P 3UO0A 3WAXA 1N2KA 1URBA 1AUKA 3SZYA 4B56A 1ELXA 2GA3A 5C66A 1KH5A 3A52A 4CXUA 1ZEBA 4KJDA 5GRRA 1K7HA 2W5QA 3UNYA 1ALHA 1HDHA 2W5VA 5LQQA 3IDDA 4MIVA 1ED8A 1EJJA 2IFYA 2W5XA 1ALKA 5KXAA 3UN2A 3T00A 2GSNA 2W5TA 4LRFA 2GSUA 4LRCA 4LRDA 4FDJA 5DLTA 1KH7A 3ED4A 4UOOA 3MK1A 3WAYA 3IGYB 3MK2A 4KAVA 1ALJA 1KHLA 1EW8A 4UPLA 1KH9A 5IJSA 1EQJA 5L0EA 3TX0A 3M8ZA 2XRGA 1KH4A 2XR9A 3NKMA 4UPKA 2X98A 4CYSA 2ZKTA 1AJBA 2W5SA 3WBHA 3BDFA 4LRAA 4QAXA 3NKQA 4CYRA 1B8JA 1Y6VA 1ELZA 1KHKA 1URAA 4UPHA 3WAWA 3M7VA 4CXSA 4LR7A 2W5WA 3M8WA 3TWZA 2GLQA 4NWJA 3SZZA 1AJAA 2W5RA 4GTXA 2QZUA 5K4PA 1ELYA 3CMRA 1EW2A 4ZGAA 3Q3QA 4GTYA
chains in the Genus database with same CATH topology
1ZEFA 2IUCA 1EW9A 4UOPA 5DLVA 4LR9A 4MHXA 5EGEA 1FSUA 3NVLA 2ANHA 1E1ZP 4KM4A 3M8YA 3NKOA 1KHNA 1Y7AA 4LR8A 5EGHA 1SHQA 3DPCA 4LREA 2RH6A 3MK0A 2W8DA 1AJDA 4N7TA 4UORA 5L0BA 1ZEDA 4GTWA 4LRBA 1ED9A 1HQAA 4UPIA 3BDGA 4ZG7A 3WAVA 3BDHA 5INHA 4ZG9A 4YR1A 1SHNA 4CXKA 5LRNA 2GSOA 4KAYA 3BDGB 3T01A 3T02A 5LIAA 1EI6A 3NKNA 3E2DA 5DLWA 3TG0A 2W8SA 5TJ3A 3NKRA 3OT9A 2IUCB 3LXQA 4GTZA 4MY4A 5IJQA 5L0KA 3KD8A 3UN3A 1E3CP 4LR2A 4LQYA 5LRMA 1ANIA 3DYCA 1ANJA 2VQRA 1N2LA 1O98A 4FDIA 1ALIA 2D1GA 1P49A 1AJCA 4TN0A 5HRTA 4NWXA 5GOVA 3B5QA 4KJGA 3IGZB 1HJKA 4ZG6A 1O99A 3NKPA 2G9YA 1KHJA 5AJ9A 3UN5A 1E2SP 1E33P 3UO0A 3WAXA 1N2KA 1URBA 1AUKA 3SZYA 4B56A 1ELXA 2GA3A 5C66A 1KH5A 3A52A 4CXUA 1ZEBA 4KJDA 5GRRA 1K7HA 2W5QA 3UNYA 1ALHA 1HDHA 2W5VA 5LQQA 3IDDA 4MIVA 1ED8A 1EJJA 2IFYA 2W5XA 1ALKA 5KXAA 3UN2A 3T00A 2GSNA 2W5TA 4LRFA 2GSUA 4LRCA 4LRDA 4FDJA 5DLTA 1KH7A 3ED4A 4UOOA 3MK1A 3WAYA 3IGYB 3MK2A 4KAVA 1ALJA 1KHLA 1EW8A 4UPLA 1KH9A 5IJSA 1EQJA 5L0EA 3TX0A 3M8ZA 2XRGA 1KH4A 2XR9A 3NKMA 4UPKA 2X98A 4CYSA 2ZKTA 1AJBA 2W5SA 3WBHA 3BDFA 4LRAA 4QAXA 3NKQA 4CYRA 1B8JA 1Y6VA 1ELZA 1KHKA 1URAA 4UPHA 3WAWA 3M7VA 4CXSA 4LR7A 2W5WA 3M8WA 3TWZA 2GLQA 4NWJA 3SZZA 1AJAA 2W5RA 4GTXA 2QZUA 5K4PA 1ELYA 3CMRA 1EW2A 4ZGAA 3Q3QA 4GTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZEF A;  2IUC A;  1EW9 A;  4UOP A;  5DLV A;  4LR9 A;  4MHX A;  5EGE A;  1FSU A;  3NVL A;  2ANH A;  1E1Z P;  4KM4 A;  3M8Y A;  3NKO A;  1KHN A;  1Y7A A;  4LR8 A;  5EGH A;  1SHQ A;  3DPC A;  4LRE A;  2RH6 A;  3MK0 A;  2W8D A;  1AJD A;  4N7T A;  4UOR A;  5L0B A;  1ZED A;  4GTW A;  4LRB A;  1ED9 A;  1HQA A;  4UPI A;  3BDG A;  4ZG7 A;  3WAV A;  3BDH A;  5INH A;  4ZG9 A;  4YR1 A;  1SHN A;  4CXK A;  5LRN A;  2GSO A;  4KAY A;  3BDG B;  3T01 A;  3T02 A;  5LIA A;  1EI6 A;  3NKN A;  3E2D A;  5DLW A;  3TG0 A;  2W8S A;  5TJ3 A;  3NKR A;  3OT9 A;  2IUC B;  3LXQ A;  4GTZ A;  4MY4 A;  5IJQ A;  5L0K A;  3KD8 A;  3UN3 A;  1E3C P;  4LR2 A;  4LQY A;  5LRM A;  1ANI A;  3DYC A;  1ANJ A;  2VQR A;  1N2L A;  1O98 A;  4FDI A;  1ALI A;  2D1G A;  1P49 A;  1AJC A;  4TN0 A;  5HRT A;  4NWX A;  5GOV A;  3B5Q A;  4KJG A;  3IGZ B;  1HJK A;  4ZG6 A;  1O99 A;  3NKP A;  2G9Y A;  1KHJ A;  5AJ9 A;  3UN5 A;  1E2S P;  1E33 P;  3UO0 A;  3WAX A;  1N2K A;  1URB A;  1AUK A;  3SZY A;  4B56 A;  1ELX A;  2GA3 A;  5C66 A;  1KH5 A;  3A52 A;  4CXU A;  1ZEB A;  4KJD A;  5GRR A;  1K7H A;  2W5Q A;  3UNY A;  1ALH A;  1HDH A;  2W5V A;  5LQQ A;  3IDD A;  4MIV A;  1ED8 A;  1EJJ A;  2IFY A;  2W5X A;  1ALK A;  5KXA A;  3UN2 A;  3T00 A;  2GSN A;  2W5T A;  4LRF A;  2GSU A;  4LRC A;  4LRD A;  4FDJ A;  5DLT A;  1KH7 A;  3ED4 A;  4UOO A;  3MK1 A;  3WAY A;  3IGY B;  3MK2 A;  4KAV A;  1ALJ A;  1KHL A;  1EW8 A;  4UPL A;  1KH9 A;  5IJS A;  1EQJ A;  5L0E A;  3TX0 A;  3M8Z A;  2XRG A;  1KH4 A;  2XR9 A;  3NKM A;  4UPK A;  2X98 A;  4CYS A;  2ZKT A;  1AJB A;  2W5S A;  3WBH A;  3BDF A;  4LRA A;  4QAX A;  3NKQ A;  4CYR A;  1B8J A;  1Y6V A;  1ELZ A;  1KHK A;  1URA A;  4UPH A;  3WAW A;  3M7V A;  4CXS A;  4LR7 A;  2W5W A;  3M8W A;  3TWZ A;  2GLQ A;  4NWJ A;  3SZZ A;  1AJA A;  2W5R A;  4GTX A;  2QZU A;  5K4P A;  1ELY A;  3CMR A;  1EW2 A;  4ZGA A;  3Q3Q A;  4GTY A; 
#chains in the Genus database with same CATH topology
 1ZEF A;  2IUC A;  1EW9 A;  4UOP A;  5DLV A;  4LR9 A;  4MHX A;  5EGE A;  1FSU A;  3NVL A;  2ANH A;  1E1Z P;  4KM4 A;  3M8Y A;  3NKO A;  1KHN A;  1Y7A A;  4LR8 A;  5EGH A;  1SHQ A;  3DPC A;  4LRE A;  2RH6 A;  3MK0 A;  2W8D A;  1AJD A;  4N7T A;  4UOR A;  5L0B A;  1ZED A;  4GTW A;  4LRB A;  1ED9 A;  1HQA A;  4UPI A;  3BDG A;  4ZG7 A;  3WAV A;  3BDH A;  5INH A;  4ZG9 A;  4YR1 A;  1SHN A;  4CXK A;  5LRN A;  2GSO A;  4KAY A;  3BDG B;  3T01 A;  3T02 A;  5LIA A;  1EI6 A;  3NKN A;  3E2D A;  5DLW A;  3TG0 A;  2W8S A;  5TJ3 A;  3NKR A;  3OT9 A;  2IUC B;  3LXQ A;  4GTZ A;  4MY4 A;  5IJQ A;  5L0K A;  3KD8 A;  3UN3 A;  1E3C P;  4LR2 A;  4LQY A;  5LRM A;  1ANI A;  3DYC A;  1ANJ A;  2VQR A;  1N2L A;  1O98 A;  4FDI A;  1ALI A;  2D1G A;  1P49 A;  1AJC A;  4TN0 A;  5HRT A;  4NWX A;  5GOV A;  3B5Q A;  4KJG A;  3IGZ B;  1HJK A;  4ZG6 A;  1O99 A;  3NKP A;  2G9Y A;  1KHJ A;  5AJ9 A;  3UN5 A;  1E2S P;  1E33 P;  3UO0 A;  3WAX A;  1N2K A;  1URB A;  1AUK A;  3SZY A;  4B56 A;  1ELX A;  2GA3 A;  5C66 A;  1KH5 A;  3A52 A;  4CXU A;  1ZEB A;  4KJD A;  5GRR A;  1K7H A;  2W5Q A;  3UNY A;  1ALH A;  1HDH A;  2W5V A;  5LQQ A;  3IDD A;  4MIV A;  1ED8 A;  1EJJ A;  2IFY A;  2W5X A;  1ALK A;  5KXA A;  3UN2 A;  3T00 A;  2GSN A;  2W5T A;  4LRF A;  2GSU A;  4LRC A;  4LRD A;  4FDJ A;  5DLT A;  1KH7 A;  3ED4 A;  4UOO A;  3MK1 A;  3WAY A;  3IGY B;  3MK2 A;  4KAV A;  1ALJ A;  1KHL A;  1EW8 A;  4UPL A;  1KH9 A;  5IJS A;  1EQJ A;  5L0E A;  3TX0 A;  3M8Z A;  2XRG A;  1KH4 A;  2XR9 A;  3NKM A;  4UPK A;  2X98 A;  4CYS A;  2ZKT A;  1AJB A;  2W5S A;  3WBH A;  3BDF A;  4LRA A;  4QAX A;  3NKQ A;  4CYR A;  1B8J A;  1Y6V A;  1ELZ A;  1KHK A;  1URA A;  4UPH A;  3WAW A;  3M7V A;  4CXS A;  4LR7 A;  2W5W A;  3M8W A;  3TWZ A;  2GLQ A;  4NWJ A;  3SZZ A;  1AJA A;  2W5R A;  4GTX A;  2QZU A;  5K4P A;  1ELY A;  3CMR A;  1EW2 A;  4ZGA A;  3Q3Q A;  4GTY A; 
#chains in the Genus database with same CATH homology
 1ZEF A;  2IUC A;  1EW9 A;  4UOP A;  5DLV A;  4LR9 A;  4MHX A;  5EGE A;  1FSU A;  3NVL A;  2ANH A;  1E1Z P;  4KM4 A;  3M8Y A;  3NKO A;  1KHN A;  1Y7A A;  4LR8 A;  5EGH A;  1SHQ A;  3DPC A;  4LRE A;  2RH6 A;  3MK0 A;  2W8D A;  1AJD A;  4N7T A;  4UOR A;  5L0B A;  1ZED A;  4GTW A;  4LRB A;  1ED9 A;  1HQA A;  4UPI A;  3BDG A;  4ZG7 A;  3WAV A;  3BDH A;  5INH A;  4ZG9 A;  4YR1 A;  1SHN A;  4CXK A;  5LRN A;  2GSO A;  4KAY A;  3BDG B;  3T01 A;  3T02 A;  5LIA A;  1EI6 A;  3NKN A;  3E2D A;  5DLW A;  3TG0 A;  2W8S A;  5TJ3 A;  3NKR A;  3OT9 A;  2IUC B;  3LXQ A;  4GTZ A;  4MY4 A;  5IJQ A;  5L0K A;  3KD8 A;  3UN3 A;  1E3C P;  4LR2 A;  4LQY A;  5LRM A;  1ANI A;  3DYC A;  1ANJ A;  2VQR A;  1N2L A;  1O98 A;  4FDI A;  1ALI A;  2D1G A;  1P49 A;  1AJC A;  4TN0 A;  5HRT A;  4NWX A;  5GOV A;  3B5Q A;  4KJG A;  3IGZ B;  1HJK A;  4ZG6 A;  1O99 A;  3NKP A;  2G9Y A;  1KHJ A;  5AJ9 A;  3UN5 A;  1E2S P;  1E33 P;  3UO0 A;  3WAX A;  1N2K A;  1URB A;  1AUK A;  3SZY A;  4B56 A;  1ELX A;  2GA3 A;  5C66 A;  1KH5 A;  3A52 A;  4CXU A;  1ZEB A;  4KJD A;  5GRR A;  1K7H A;  2W5Q A;  3UNY A;  1ALH A;  1HDH A;  2W5V A;  5LQQ A;  3IDD A;  4MIV A;  1ED8 A;  1EJJ A;  2IFY A;  2W5X A;  1ALK A;  5KXA A;  3UN2 A;  3T00 A;  2GSN A;  2W5T A;  4LRF A;  2GSU A;  4LRC A;  4LRD A;  4FDJ A;  5DLT A;  1KH7 A;  3ED4 A;  4UOO A;  3MK1 A;  3WAY A;  3IGY B;  3MK2 A;  4KAV A;  1ALJ A;  1KHL A;  1EW8 A;  4UPL A;  1KH9 A;  5IJS A;  1EQJ A;  5L0E A;  3TX0 A;  3M8Z A;  2XRG A;  1KH4 A;  2XR9 A;  3NKM A;  4UPK A;  2X98 A;  4CYS A;  2ZKT A;  1AJB A;  2W5S A;  3WBH A;  3BDF A;  4LRA A;  4QAX A;  3NKQ A;  4CYR A;  1B8J A;  1Y6V A;  1ELZ A;  1KHK A;  1URA A;  4UPH A;  3WAW A;  3M7V A;  4CXS A;  4LR7 A;  2W5W A;  3M8W A;  3TWZ A;  2GLQ A;  4NWJ A;  3SZZ A;  1AJA A;  2W5R A;  4GTX A;  2QZU A;  5K4P A;  1ELY A;  3CMR A;  1EW2 A;  4ZGA A;  3Q3Q A;  4GTY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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