1EJJA

Crystal structural analysis of phosphoglycerate mutase cocrystallized with 3-phosphoglycerate
Total Genus 196
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
196
Knots found
sequence length
508
structure length
508
Chain Sequence
b'KKPVALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHTTLKACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTYRDPLECIEDSYKHGIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRDGGILGDLAPTMLDLLGLPQPKEMTGKSLIV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PHOSPHOGLYCERATE MUTASE
publication title Structure and mechanism of action of a novel phosphoglycerate mutase from Bacillus stearothermophilus.
pubmed doi rcsb
source organism Geobacillus stearothermophilus
molecule tags Isomerase
total genus 196
structure length 508
sequence length 508
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2000-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ejjA02
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 1ejjA01
3WAYA 1ALJA 3BDFA 4KM4A 3SZYA 3BDGA 3TX0A 4ZG6A 2IUCB 2W5SA 3TG0A 4UPKA 4MHXA 3SZZA 4LR9A 5HRTA 4LRFA 3UN3A 3T02A 1AJDA 1KHJA 1HQAA 2W5WA 3TWZA 3UNYA 1SHQA 1AJBA 1KHLA 3LXQA 3NVLA 4GTZA 3M8YA 5TJ3A 3A52A 3M8ZA 1O98A 3IGYB 1Y6VA 5L0KA 4B56A 3BDGB 4FDIA 2VQRA 2W5QA 5IJSA 3BDHA 3IDDA 5GOVA 1ZEBA 3NKNA 2GLQA 3OT9A 3Q3QA 3ED4A 4LRBA 3UO0A 1EJJA 4ZGAA 1P49A 4FDJA 5EGEA 5DLTA 1E2SP 3WAXA 4NWJA 3MK2A 2GSUA 2GSOA 4N7TA 5IJQA 1KH7A 1KH5A 3E2DA 5L0EA 2W5VA 1AJAA 5INHA 1EW8A 2ZKTA 4MIVA 3WBHA 1N2KA 1ALHA 4LR8A 3KD8A 2ANHA 4LR7A 4UPLA 1HJKA 4GTWA 1ANIA 5L0BA 2XRGA 3NKOA 1SHNA 2QZUA 4KJDA 1E33P 1K7HA 1KH9A 1ED9A 4UPIA 1O99A 1KH4A 1E3CP 2IFYA 2X98A 2W5RA 2W5XA 5KXAA 4UOOA 1AJCA 1B8JA 1KHKA 3B5QA 4GTYA 4LQYA 4CYRA 2G9YA 5LRNA 3NKRA 3CMRA 3MK0A 2D1GA 1URBA 1ED8A 5LQQA 1EI6A 1ZEFA 2RH6A 5LIAA 4LRAA 4KAVA 4TN0A 4GTXA 4UORA 4ZG7A 4ZG9A 4UPHA 4LR2A 1ELZA 4QAXA 4CYSA 4YR1A 1ELXA 5LRMA 1HDHA 5GRRA 4LRDA 3IGZB 4CXSA 3MK1A 2XR9A 3WAWA 2GSNA 4NWXA 4LREA 2W8DA 3DPCA 5EGHA 2W5TA 4LRCA 4KJGA 1ELYA 1FSUA 3DYCA 3UN2A 5DLWA 1EW9A 4UOPA 5K4PA 1ANJA 1N2LA 4CXKA 4KAYA 1AUKA 5C66A 4MY4A 2IUCA 2W8SA 3M8WA 1E1ZP 3UN5A 1EW2A 3M7VA 5DLVA 5AJ9A 1URAA 3NKMA 4CXUA 2GA3A 1ALIA 3NKQA 3NKPA 1ZEDA 3T01A 3T00A 3WAVA 1ALKA 1KHNA 1Y7AA 1EQJA
chains in the Genus database with same CATH superfamily
3WAYA 1ALJA 3BDFA 4KM4A 3SZYA 3BDGA 3TX0A 4ZG6A 2IUCB 2W5SA 3TG0A 4UPKA 4MHXA 3SZZA 4LR9A 5HRTA 4LRFA 3UN3A 3T02A 1AJDA 1KHJA 1HQAA 2W5WA 3TWZA 3UNYA 1SHQA 1AJBA 1KHLA 3LXQA 3NVLA 4GTZA 3M8YA 5TJ3A 3A52A 3M8ZA 1O98A 3IGYB 1Y6VA 5L0KA 4B56A 3BDGB 4FDIA 2VQRA 2W5QA 5IJSA 3BDHA 3IDDA 5GOVA 1ZEBA 3NKNA 2GLQA 3OT9A 3Q3QA 3ED4A 4LRBA 3UO0A 1EJJA 4ZGAA 1P49A 4FDJA 5EGEA 5DLTA 1E2SP 3WAXA 4NWJA 3MK2A 2GSUA 2GSOA 4N7TA 5IJQA 1KH7A 1KH5A 3E2DA 5L0EA 2W5VA 1AJAA 5INHA 1EW8A 2ZKTA 4MIVA 3WBHA 1N2KA 1ALHA 4LR8A 3KD8A 2ANHA 4LR7A 4UPLA 1HJKA 4GTWA 1ANIA 5L0BA 2XRGA 3NKOA 1SHNA 2QZUA 4KJDA 1E33P 1K7HA 1KH9A 1ED9A 4UPIA 1O99A 1KH4A 1E3CP 2IFYA 2X98A 2W5RA 2W5XA 5KXAA 4UOOA 1AJCA 1B8JA 1KHKA 3B5QA 4GTYA 4LQYA 4CYRA 2G9YA 5LRNA 3NKRA 3CMRA 3MK0A 2D1GA 1URBA 1ED8A 5LQQA 1EI6A 1ZEFA 2RH6A 5LIAA 4LRAA 4KAVA 4TN0A 4GTXA 4UORA 4ZG7A 4ZG9A 4UPHA 4LR2A 1ELZA 4QAXA 4CYSA 4YR1A 1ELXA 5LRMA 1HDHA 5GRRA 4LRDA 3IGZB 4CXSA 3MK1A 2XR9A 3WAWA 2GSNA 4NWXA 4LREA 2W8DA 3DPCA 5EGHA 2W5TA 4LRCA 4KJGA 1ELYA 1FSUA 3DYCA 3UN2A 5DLWA 1EW9A 4UOPA 5K4PA 1ANJA 1N2LA 4CXKA 4KAYA 1AUKA 5C66A 4MY4A 2IUCA 2W8SA 3M8WA 1E1ZP 3UN5A 1EW2A 3M7VA 5DLVA 5AJ9A 1URAA 3NKMA 4CXUA 2GA3A 1ALIA 3NKQA 3NKPA 1ZEDA 3T01A 3T00A 3WAVA 1ALKA 1KHNA 1Y7AA 1EQJA
chains in the Genus database with same CATH topology
3WAYA 1ALJA 3BDFA 4KM4A 3SZYA 3BDGA 3TX0A 4ZG6A 2IUCB 2W5SA 3TG0A 4UPKA 4MHXA 3SZZA 4LR9A 5HRTA 4LRFA 3UN3A 3T02A 1AJDA 1KHJA 1HQAA 2W5WA 3TWZA 3UNYA 1SHQA 1AJBA 1KHLA 3LXQA 3NVLA 4GTZA 3M8YA 5TJ3A 3A52A 3M8ZA 1O98A 3IGYB 1Y6VA 5L0KA 4B56A 3BDGB 4FDIA 2VQRA 2W5QA 5IJSA 3BDHA 3IDDA 5GOVA 1ZEBA 3NKNA 2GLQA 3OT9A 3Q3QA 3ED4A 4LRBA 3UO0A 1EJJA 4ZGAA 1P49A 4FDJA 5EGEA 5DLTA 1E2SP 3WAXA 4NWJA 3MK2A 2GSUA 2GSOA 4N7TA 5IJQA 1KH7A 1KH5A 3E2DA 5L0EA 2W5VA 1AJAA 5INHA 1EW8A 2ZKTA 4MIVA 3WBHA 1N2KA 1ALHA 4LR8A 3KD8A 2ANHA 4LR7A 4UPLA 1HJKA 4GTWA 1ANIA 5L0BA 2XRGA 3NKOA 1SHNA 2QZUA 4KJDA 1E33P 1K7HA 1KH9A 1ED9A 4UPIA 1O99A 1KH4A 1E3CP 2IFYA 2X98A 2W5RA 2W5XA 5KXAA 4UOOA 1AJCA 1B8JA 1KHKA 3B5QA 4GTYA 4LQYA 4CYRA 2G9YA 5LRNA 3NKRA 3CMRA 3MK0A 2D1GA 1URBA 1ED8A 5LQQA 1EI6A 1ZEFA 2RH6A 5LIAA 4LRAA 4KAVA 4TN0A 4GTXA 4UORA 4ZG7A 4ZG9A 4UPHA 4LR2A 1ELZA 4QAXA 4CYSA 4YR1A 1ELXA 5LRMA 1HDHA 5GRRA 4LRDA 3IGZB 4CXSA 3MK1A 2XR9A 3WAWA 2GSNA 4NWXA 4LREA 2W8DA 3DPCA 5EGHA 2W5TA 4LRCA 4KJGA 1ELYA 1FSUA 3DYCA 3UN2A 5DLWA 1EW9A 4UOPA 5K4PA 1ANJA 1N2LA 4CXKA 4KAYA 1AUKA 5C66A 4MY4A 2IUCA 2W8SA 3M8WA 1E1ZP 3UN5A 1EW2A 3M7VA 5DLVA 5AJ9A 1URAA 3NKMA 4CXUA 2GA3A 1ALIA 3NKQA 3NKPA 1ZEDA 3T01A 3T00A 3WAVA 1ALKA 1KHNA 1Y7AA 1EQJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WAY A;  1ALJ A;  3BDF A;  4KM4 A;  3SZY A;  3BDG A;  3TX0 A;  4ZG6 A;  2IUC B;  2W5S A;  3TG0 A;  4UPK A;  4MHX A;  3SZZ A;  4LR9 A;  5HRT A;  4LRF A;  3UN3 A;  3T02 A;  1AJD A;  1KHJ A;  1HQA A;  2W5W A;  3TWZ A;  3UNY A;  1SHQ A;  1AJB A;  1KHL A;  3LXQ A;  3NVL A;  4GTZ A;  3M8Y A;  5TJ3 A;  3A52 A;  3M8Z A;  1O98 A;  3IGY B;  1Y6V A;  5L0K A;  4B56 A;  3BDG B;  4FDI A;  2VQR A;  2W5Q A;  5IJS A;  3BDH A;  3IDD A;  5GOV A;  1ZEB A;  3NKN A;  2GLQ A;  3OT9 A;  3Q3Q A;  3ED4 A;  4LRB A;  3UO0 A;  1EJJ A;  4ZGA A;  1P49 A;  4FDJ A;  5EGE A;  5DLT A;  1E2S P;  3WAX A;  4NWJ A;  3MK2 A;  2GSU A;  2GSO A;  4N7T A;  5IJQ A;  1KH7 A;  1KH5 A;  3E2D A;  5L0E A;  2W5V A;  1AJA A;  5INH A;  1EW8 A;  2ZKT A;  4MIV A;  3WBH A;  1N2K A;  1ALH A;  4LR8 A;  3KD8 A;  2ANH A;  4LR7 A;  4UPL A;  1HJK A;  4GTW A;  1ANI A;  5L0B A;  2XRG A;  3NKO A;  1SHN A;  2QZU A;  4KJD A;  1E33 P;  1K7H A;  1KH9 A;  1ED9 A;  4UPI A;  1O99 A;  1KH4 A;  1E3C P;  2IFY A;  2X98 A;  2W5R A;  2W5X A;  5KXA A;  4UOO A;  1AJC A;  1B8J A;  1KHK A;  3B5Q A;  4GTY A;  4LQY A;  4CYR A;  2G9Y A;  5LRN A;  3NKR A;  3CMR A;  3MK0 A;  2D1G A;  1URB A;  1ED8 A;  5LQQ A;  1EI6 A;  1ZEF A;  2RH6 A;  5LIA A;  4LRA A;  4KAV A;  4TN0 A;  4GTX A;  4UOR A;  4ZG7 A;  4ZG9 A;  4UPH A;  4LR2 A;  1ELZ A;  4QAX A;  4CYS A;  4YR1 A;  1ELX A;  5LRM A;  1HDH A;  5GRR A;  4LRD A;  3IGZ B;  4CXS A;  3MK1 A;  2XR9 A;  3WAW A;  2GSN A;  4NWX A;  4LRE A;  2W8D A;  3DPC A;  5EGH A;  2W5T A;  4LRC A;  4KJG A;  1ELY A;  1FSU A;  3DYC A;  3UN2 A;  5DLW A;  1EW9 A;  4UOP A;  5K4P A;  1ANJ A;  1N2L A;  4CXK A;  4KAY A;  1AUK A;  5C66 A;  4MY4 A;  2IUC A;  2W8S A;  3M8W A;  1E1Z P;  3UN5 A;  1EW2 A;  3M7V A;  5DLV A;  5AJ9 A;  1URA A;  3NKM A;  4CXU A;  2GA3 A;  1ALI A;  3NKQ A;  3NKP A;  1ZED A;  3T01 A;  3T00 A;  3WAV A;  1ALK A;  1KHN A;  1Y7A A;  1EQJ A; 
#chains in the Genus database with same CATH topology
 3WAY A;  1ALJ A;  3BDF A;  4KM4 A;  3SZY A;  3BDG A;  3TX0 A;  4ZG6 A;  2IUC B;  2W5S A;  3TG0 A;  4UPK A;  4MHX A;  3SZZ A;  4LR9 A;  5HRT A;  4LRF A;  3UN3 A;  3T02 A;  1AJD A;  1KHJ A;  1HQA A;  2W5W A;  3TWZ A;  3UNY A;  1SHQ A;  1AJB A;  1KHL A;  3LXQ A;  3NVL A;  4GTZ A;  3M8Y A;  5TJ3 A;  3A52 A;  3M8Z A;  1O98 A;  3IGY B;  1Y6V A;  5L0K A;  4B56 A;  3BDG B;  4FDI A;  2VQR A;  2W5Q A;  5IJS A;  3BDH A;  3IDD A;  5GOV A;  1ZEB A;  3NKN A;  2GLQ A;  3OT9 A;  3Q3Q A;  3ED4 A;  4LRB A;  3UO0 A;  1EJJ A;  4ZGA A;  1P49 A;  4FDJ A;  5EGE A;  5DLT A;  1E2S P;  3WAX A;  4NWJ A;  3MK2 A;  2GSU A;  2GSO A;  4N7T A;  5IJQ A;  1KH7 A;  1KH5 A;  3E2D A;  5L0E A;  2W5V A;  1AJA A;  5INH A;  1EW8 A;  2ZKT A;  4MIV A;  3WBH A;  1N2K A;  1ALH A;  4LR8 A;  3KD8 A;  2ANH A;  4LR7 A;  4UPL A;  1HJK A;  4GTW A;  1ANI A;  5L0B A;  2XRG A;  3NKO A;  1SHN A;  2QZU A;  4KJD A;  1E33 P;  1K7H A;  1KH9 A;  1ED9 A;  4UPI A;  1O99 A;  1KH4 A;  1E3C P;  2IFY A;  2X98 A;  2W5R A;  2W5X A;  5KXA A;  4UOO A;  1AJC A;  1B8J A;  1KHK A;  3B5Q A;  4GTY A;  4LQY A;  4CYR A;  2G9Y A;  5LRN A;  3NKR A;  3CMR A;  3MK0 A;  2D1G A;  1URB A;  1ED8 A;  5LQQ A;  1EI6 A;  1ZEF A;  2RH6 A;  5LIA A;  4LRA A;  4KAV A;  4TN0 A;  4GTX A;  4UOR A;  4ZG7 A;  4ZG9 A;  4UPH A;  4LR2 A;  1ELZ A;  4QAX A;  4CYS A;  4YR1 A;  1ELX A;  5LRM A;  1HDH A;  5GRR A;  4LRD A;  3IGZ B;  4CXS A;  3MK1 A;  2XR9 A;  3WAW A;  2GSN A;  4NWX A;  4LRE A;  2W8D A;  3DPC A;  5EGH A;  2W5T A;  4LRC A;  4KJG A;  1ELY A;  1FSU A;  3DYC A;  3UN2 A;  5DLW A;  1EW9 A;  4UOP A;  5K4P A;  1ANJ A;  1N2L A;  4CXK A;  4KAY A;  1AUK A;  5C66 A;  4MY4 A;  2IUC A;  2W8S A;  3M8W A;  1E1Z P;  3UN5 A;  1EW2 A;  3M7V A;  5DLV A;  5AJ9 A;  1URA A;  3NKM A;  4CXU A;  2GA3 A;  1ALI A;  3NKQ A;  3NKP A;  1ZED A;  3T01 A;  3T00 A;  3WAV A;  1ALK A;  1KHN A;  1Y7A A;  1EQJ A; 
#chains in the Genus database with same CATH homology
 3WAY A;  1ALJ A;  3BDF A;  4KM4 A;  3SZY A;  3BDG A;  3TX0 A;  4ZG6 A;  2IUC B;  2W5S A;  3TG0 A;  4UPK A;  4MHX A;  3SZZ A;  4LR9 A;  5HRT A;  4LRF A;  3UN3 A;  3T02 A;  1AJD A;  1KHJ A;  1HQA A;  2W5W A;  3TWZ A;  3UNY A;  1SHQ A;  1AJB A;  1KHL A;  3LXQ A;  3NVL A;  4GTZ A;  3M8Y A;  5TJ3 A;  3A52 A;  3M8Z A;  1O98 A;  3IGY B;  1Y6V A;  5L0K A;  4B56 A;  3BDG B;  4FDI A;  2VQR A;  2W5Q A;  5IJS A;  3BDH A;  3IDD A;  5GOV A;  1ZEB A;  3NKN A;  2GLQ A;  3OT9 A;  3Q3Q A;  3ED4 A;  4LRB A;  3UO0 A;  1EJJ A;  4ZGA A;  1P49 A;  4FDJ A;  5EGE A;  5DLT A;  1E2S P;  3WAX A;  4NWJ A;  3MK2 A;  2GSU A;  2GSO A;  4N7T A;  5IJQ A;  1KH7 A;  1KH5 A;  3E2D A;  5L0E A;  2W5V A;  1AJA A;  5INH A;  1EW8 A;  2ZKT A;  4MIV A;  3WBH A;  1N2K A;  1ALH A;  4LR8 A;  3KD8 A;  2ANH A;  4LR7 A;  4UPL A;  1HJK A;  4GTW A;  1ANI A;  5L0B A;  2XRG A;  3NKO A;  1SHN A;  2QZU A;  4KJD A;  1E33 P;  1K7H A;  1KH9 A;  1ED9 A;  4UPI A;  1O99 A;  1KH4 A;  1E3C P;  2IFY A;  2X98 A;  2W5R A;  2W5X A;  5KXA A;  4UOO A;  1AJC A;  1B8J A;  1KHK A;  3B5Q A;  4GTY A;  4LQY A;  4CYR A;  2G9Y A;  5LRN A;  3NKR A;  3CMR A;  3MK0 A;  2D1G A;  1URB A;  1ED8 A;  5LQQ A;  1EI6 A;  1ZEF A;  2RH6 A;  5LIA A;  4LRA A;  4KAV A;  4TN0 A;  4GTX A;  4UOR A;  4ZG7 A;  4ZG9 A;  4UPH A;  4LR2 A;  1ELZ A;  4QAX A;  4CYS A;  4YR1 A;  1ELX A;  5LRM A;  1HDH A;  5GRR A;  4LRD A;  3IGZ B;  4CXS A;  3MK1 A;  2XR9 A;  3WAW A;  2GSN A;  4NWX A;  4LRE A;  2W8D A;  3DPC A;  5EGH A;  2W5T A;  4LRC A;  4KJG A;  1ELY A;  1FSU A;  3DYC A;  3UN2 A;  5DLW A;  1EW9 A;  4UOP A;  5K4P A;  1ANJ A;  1N2L A;  4CXK A;  4KAY A;  1AUK A;  5C66 A;  4MY4 A;  2IUC A;  2W8S A;  3M8W A;  1E1Z P;  3UN5 A;  1EW2 A;  3M7V A;  5DLV A;  5AJ9 A;  1URA A;  3NKM A;  4CXU A;  2GA3 A;  1ALI A;  3NKQ A;  3NKP A;  1ZED A;  3T01 A;  3T00 A;  3WAV A;  1ALK A;  1KHN A;  1Y7A A;  1EQJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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