1ED9A

Structure of e. coli alkaline phosphatase without the inorganic phosphate at 1.75a resolution
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
449
structure length
449
Chain Sequence
b'TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title A revised mechanism for the alkaline phosphatase reaction involving three metal ions.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
source organism Escherichia coli
molecule tags Hydrolase
total genus 167
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2000-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ed9A00
5C66A 2D1GA 4ZG9A 1ED9A 1KHJA 2GA3A 1HDHA 4FDIA 4KAVA 4LRAA 5L0KA 4UOOA 1SHNA 3WAWA 1ELYA 3MK0A 2IFYA 2RH6A 4MY4A 4ZGAA 3M8YA 4FDJA 3NKRA 4MHXA 1HJKA 1EW2A 3UNYA 3LXQA 3DYCA 3IGZB 2X98A 1ALIA 1EW9A 1O98A 3T01A 4UPLA 1AJAA 4UOPA 5L0EA 3WAXA 4YR1A 1ELZA 3UO0A 1URAA 5LRMA 5IJQA 1K7HA 4NWJA 3WAVA 3UN2A 2W5WA 5TJ3A 2GSNA 1Y6VA 4LRCA 3M8ZA 4LR7A 2XR9A 4GTWA 1EW8A 4UPKA 3TX0A 4CXUA 4N7TA 2IUCA 1HQAA 3CMRA 3ED4A 1KHNA 1ALHA 4LREA 5GOVA 3TG0A 3MK2A 3NKMA 1ALKA 2ZKTA 3WAYA 1B8JA 3B5QA 2W8SA 4B56A 5DLTA 4LRBA 1EI6A 1KH4A 4CYSA 2XRGA 2W5RA 1ZEFA 2G9YA 4GTZA 1E33P 1Y7AA 3T02A 4CYRA 5HRTA 3TWZA 5K4PA 1ANIA 5DLVA 2W5XA 3A52A 1KH9A 1ZEBA 3NKNA 4GTXA 5KXAA 2W5TA 1AJCA 3Q3QA 3UN5A 5LRNA 3OT9A 2W5VA 2W8DA 3BDGB 1KHLA 5LIAA 5LQQA 4KM4A 1O99A 2GSUA 3BDHA 1E1ZP 1URBA 3NVLA 3WBHA 4CXKA 4QAXA 1SHQA 3UN3A 5DLWA 4LRDA 1KHKA 1FSUA 4NWXA 1AJDA 5GRRA 3NKOA 2W5SA 1P49A 1ANJA 2GSOA 2ANHA 1KH5A 4ZG7A 1N2KA 4GTYA 1E3CP 4UPIA 5INHA 2VQRA 4ZG6A 1ALJA 3NKQA 3NKPA 5AJ9A 2W5QA 4LQYA 3BDGA 3DPCA 4LR9A 4UORA 5EGEA 2QZUA 3M7VA 3M8WA 1ZEDA 4LR8A 1ED8A 3BDFA 5EGHA 4KJDA 5IJSA 1AJBA 4MIVA 4LRFA 3KD8A 1AUKA 3SZYA 4CXSA 4TN0A 1EJJA 4LR2A 3IDDA 4UPHA 3T00A 4KJGA 2GLQA 2IUCB 3IGYB 3SZZA 3E2DA 4KAYA 5L0BA 1N2LA 1KH7A 1ELXA 1EQJA 3MK1A 1E2SP
chains in the Genus database with same CATH superfamily
5C66A 2D1GA 4ZG9A 1ED9A 1KHJA 2GA3A 1HDHA 4FDIA 4KAVA 4LRAA 5L0KA 4UOOA 1SHNA 3WAWA 1ELYA 3MK0A 2IFYA 2RH6A 4MY4A 4ZGAA 3M8YA 4FDJA 3NKRA 4MHXA 1HJKA 1EW2A 3UNYA 3LXQA 3DYCA 3IGZB 2X98A 1ALIA 1EW9A 1O98A 3T01A 4UPLA 1AJAA 4UOPA 5L0EA 3WAXA 4YR1A 1ELZA 3UO0A 1URAA 5LRMA 5IJQA 1K7HA 4NWJA 3WAVA 3UN2A 2W5WA 5TJ3A 2GSNA 1Y6VA 4LRCA 3M8ZA 4LR7A 2XR9A 4GTWA 1EW8A 4UPKA 3TX0A 4CXUA 4N7TA 2IUCA 1HQAA 3CMRA 3ED4A 1KHNA 1ALHA 4LREA 5GOVA 3TG0A 3MK2A 3NKMA 1ALKA 2ZKTA 3WAYA 1B8JA 3B5QA 2W8SA 4B56A 5DLTA 4LRBA 1EI6A 1KH4A 4CYSA 2XRGA 2W5RA 1ZEFA 2G9YA 4GTZA 1E33P 1Y7AA 3T02A 4CYRA 5HRTA 3TWZA 5K4PA 1ANIA 5DLVA 2W5XA 3A52A 1KH9A 1ZEBA 3NKNA 4GTXA 5KXAA 2W5TA 1AJCA 3Q3QA 3UN5A 5LRNA 3OT9A 2W5VA 2W8DA 3BDGB 1KHLA 5LIAA 5LQQA 4KM4A 1O99A 2GSUA 3BDHA 1E1ZP 1URBA 3NVLA 3WBHA 4CXKA 4QAXA 1SHQA 3UN3A 5DLWA 4LRDA 1KHKA 1FSUA 4NWXA 1AJDA 5GRRA 3NKOA 2W5SA 1P49A 1ANJA 2GSOA 2ANHA 1KH5A 4ZG7A 1N2KA 4GTYA 1E3CP 4UPIA 5INHA 2VQRA 4ZG6A 1ALJA 3NKQA 3NKPA 5AJ9A 2W5QA 4LQYA 3BDGA 3DPCA 4LR9A 4UORA 5EGEA 2QZUA 3M7VA 3M8WA 1ZEDA 4LR8A 1ED8A 3BDFA 5EGHA 4KJDA 5IJSA 1AJBA 4MIVA 4LRFA 3KD8A 1AUKA 3SZYA 4CXSA 4TN0A 1EJJA 4LR2A 3IDDA 4UPHA 3T00A 4KJGA 2GLQA 2IUCB 3IGYB 3SZZA 3E2DA 4KAYA 5L0BA 1N2LA 1KH7A 1ELXA 1EQJA 3MK1A 1E2SP
chains in the Genus database with same CATH topology
5C66A 2D1GA 4ZG9A 1ED9A 1KHJA 2GA3A 1HDHA 4FDIA 4KAVA 4LRAA 5L0KA 4UOOA 1SHNA 3WAWA 1ELYA 3MK0A 2IFYA 2RH6A 4MY4A 4ZGAA 3M8YA 4FDJA 3NKRA 4MHXA 1HJKA 1EW2A 3UNYA 3LXQA 3DYCA 3IGZB 2X98A 1ALIA 1EW9A 1O98A 3T01A 4UPLA 1AJAA 4UOPA 5L0EA 3WAXA 4YR1A 1ELZA 3UO0A 1URAA 5LRMA 5IJQA 1K7HA 4NWJA 3WAVA 3UN2A 2W5WA 5TJ3A 2GSNA 1Y6VA 4LRCA 3M8ZA 4LR7A 2XR9A 4GTWA 1EW8A 4UPKA 3TX0A 4CXUA 4N7TA 2IUCA 1HQAA 3CMRA 3ED4A 1KHNA 1ALHA 4LREA 5GOVA 3TG0A 3MK2A 3NKMA 1ALKA 2ZKTA 3WAYA 1B8JA 3B5QA 2W8SA 4B56A 5DLTA 4LRBA 1EI6A 1KH4A 4CYSA 2XRGA 2W5RA 1ZEFA 2G9YA 4GTZA 1E33P 1Y7AA 3T02A 4CYRA 5HRTA 3TWZA 5K4PA 1ANIA 5DLVA 2W5XA 3A52A 1KH9A 1ZEBA 3NKNA 4GTXA 5KXAA 2W5TA 1AJCA 3Q3QA 3UN5A 5LRNA 3OT9A 2W5VA 2W8DA 3BDGB 1KHLA 5LIAA 5LQQA 4KM4A 1O99A 2GSUA 3BDHA 1E1ZP 1URBA 3NVLA 3WBHA 4CXKA 4QAXA 1SHQA 3UN3A 5DLWA 4LRDA 1KHKA 1FSUA 4NWXA 1AJDA 5GRRA 3NKOA 2W5SA 1P49A 1ANJA 2GSOA 2ANHA 1KH5A 4ZG7A 1N2KA 4GTYA 1E3CP 4UPIA 5INHA 2VQRA 4ZG6A 1ALJA 3NKQA 3NKPA 5AJ9A 2W5QA 4LQYA 3BDGA 3DPCA 4LR9A 4UORA 5EGEA 2QZUA 3M7VA 3M8WA 1ZEDA 4LR8A 1ED8A 3BDFA 5EGHA 4KJDA 5IJSA 1AJBA 4MIVA 4LRFA 3KD8A 1AUKA 3SZYA 4CXSA 4TN0A 1EJJA 4LR2A 3IDDA 4UPHA 3T00A 4KJGA 2GLQA 2IUCB 3IGYB 3SZZA 3E2DA 4KAYA 5L0BA 1N2LA 1KH7A 1ELXA 1EQJA 3MK1A 1E2SP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C66 A;  2D1G A;  4ZG9 A;  1ED9 A;  1KHJ A;  2GA3 A;  1HDH A;  4FDI A;  4KAV A;  4LRA A;  5L0K A;  4UOO A;  1SHN A;  3WAW A;  1ELY A;  3MK0 A;  2IFY A;  2RH6 A;  4MY4 A;  4ZGA A;  3M8Y A;  4FDJ A;  3NKR A;  4MHX A;  1HJK A;  1EW2 A;  3UNY A;  3LXQ A;  3DYC A;  3IGZ B;  2X98 A;  1ALI A;  1EW9 A;  1O98 A;  3T01 A;  4UPL A;  1AJA A;  4UOP A;  5L0E A;  3WAX A;  4YR1 A;  1ELZ A;  3UO0 A;  1URA A;  5LRM A;  5IJQ A;  1K7H A;  4NWJ A;  3WAV A;  3UN2 A;  2W5W A;  5TJ3 A;  2GSN A;  1Y6V A;  4LRC A;  3M8Z A;  4LR7 A;  2XR9 A;  4GTW A;  1EW8 A;  4UPK A;  3TX0 A;  4CXU A;  4N7T A;  2IUC A;  1HQA A;  3CMR A;  3ED4 A;  1KHN A;  1ALH A;  4LRE A;  5GOV A;  3TG0 A;  3MK2 A;  3NKM A;  1ALK A;  2ZKT A;  3WAY A;  1B8J A;  3B5Q A;  2W8S A;  4B56 A;  5DLT A;  4LRB A;  1EI6 A;  1KH4 A;  4CYS A;  2XRG A;  2W5R A;  1ZEF A;  2G9Y A;  4GTZ A;  1E33 P;  1Y7A A;  3T02 A;  4CYR A;  5HRT A;  3TWZ A;  5K4P A;  1ANI A;  5DLV A;  2W5X A;  3A52 A;  1KH9 A;  1ZEB A;  3NKN A;  4GTX A;  5KXA A;  2W5T A;  1AJC A;  3Q3Q A;  3UN5 A;  5LRN A;  3OT9 A;  2W5V A;  2W8D A;  3BDG B;  1KHL A;  5LIA A;  5LQQ A;  4KM4 A;  1O99 A;  2GSU A;  3BDH A;  1E1Z P;  1URB A;  3NVL A;  3WBH A;  4CXK A;  4QAX A;  1SHQ A;  3UN3 A;  5DLW A;  4LRD A;  1KHK A;  1FSU A;  4NWX A;  1AJD A;  5GRR A;  3NKO A;  2W5S A;  1P49 A;  1ANJ A;  2GSO A;  2ANH A;  1KH5 A;  4ZG7 A;  1N2K A;  4GTY A;  1E3C P;  4UPI A;  5INH A;  2VQR A;  4ZG6 A;  1ALJ A;  3NKQ A;  3NKP A;  5AJ9 A;  2W5Q A;  4LQY A;  3BDG A;  3DPC A;  4LR9 A;  4UOR A;  5EGE A;  2QZU A;  3M7V A;  3M8W A;  1ZED A;  4LR8 A;  1ED8 A;  3BDF A;  5EGH A;  4KJD A;  5IJS A;  1AJB A;  4MIV A;  4LRF A;  3KD8 A;  1AUK A;  3SZY A;  4CXS A;  4TN0 A;  1EJJ A;  4LR2 A;  3IDD A;  4UPH A;  3T00 A;  4KJG A;  2GLQ A;  2IUC B;  3IGY B;  3SZZ A;  3E2D A;  4KAY A;  5L0B A;  1N2L A;  1KH7 A;  1ELX A;  1EQJ A;  3MK1 A;  1E2S P; 
#chains in the Genus database with same CATH topology
 5C66 A;  2D1G A;  4ZG9 A;  1ED9 A;  1KHJ A;  2GA3 A;  1HDH A;  4FDI A;  4KAV A;  4LRA A;  5L0K A;  4UOO A;  1SHN A;  3WAW A;  1ELY A;  3MK0 A;  2IFY A;  2RH6 A;  4MY4 A;  4ZGA A;  3M8Y A;  4FDJ A;  3NKR A;  4MHX A;  1HJK A;  1EW2 A;  3UNY A;  3LXQ A;  3DYC A;  3IGZ B;  2X98 A;  1ALI A;  1EW9 A;  1O98 A;  3T01 A;  4UPL A;  1AJA A;  4UOP A;  5L0E A;  3WAX A;  4YR1 A;  1ELZ A;  3UO0 A;  1URA A;  5LRM A;  5IJQ A;  1K7H A;  4NWJ A;  3WAV A;  3UN2 A;  2W5W A;  5TJ3 A;  2GSN A;  1Y6V A;  4LRC A;  3M8Z A;  4LR7 A;  2XR9 A;  4GTW A;  1EW8 A;  4UPK A;  3TX0 A;  4CXU A;  4N7T A;  2IUC A;  1HQA A;  3CMR A;  3ED4 A;  1KHN A;  1ALH A;  4LRE A;  5GOV A;  3TG0 A;  3MK2 A;  3NKM A;  1ALK A;  2ZKT A;  3WAY A;  1B8J A;  3B5Q A;  2W8S A;  4B56 A;  5DLT A;  4LRB A;  1EI6 A;  1KH4 A;  4CYS A;  2XRG A;  2W5R A;  1ZEF A;  2G9Y A;  4GTZ A;  1E33 P;  1Y7A A;  3T02 A;  4CYR A;  5HRT A;  3TWZ A;  5K4P A;  1ANI A;  5DLV A;  2W5X A;  3A52 A;  1KH9 A;  1ZEB A;  3NKN A;  4GTX A;  5KXA A;  2W5T A;  1AJC A;  3Q3Q A;  3UN5 A;  5LRN A;  3OT9 A;  2W5V A;  2W8D A;  3BDG B;  1KHL A;  5LIA A;  5LQQ A;  4KM4 A;  1O99 A;  2GSU A;  3BDH A;  1E1Z P;  1URB A;  3NVL A;  3WBH A;  4CXK A;  4QAX A;  1SHQ A;  3UN3 A;  5DLW A;  4LRD A;  1KHK A;  1FSU A;  4NWX A;  1AJD A;  5GRR A;  3NKO A;  2W5S A;  1P49 A;  1ANJ A;  2GSO A;  2ANH A;  1KH5 A;  4ZG7 A;  1N2K A;  4GTY A;  1E3C P;  4UPI A;  5INH A;  2VQR A;  4ZG6 A;  1ALJ A;  3NKQ A;  3NKP A;  5AJ9 A;  2W5Q A;  4LQY A;  3BDG A;  3DPC A;  4LR9 A;  4UOR A;  5EGE A;  2QZU A;  3M7V A;  3M8W A;  1ZED A;  4LR8 A;  1ED8 A;  3BDF A;  5EGH A;  4KJD A;  5IJS A;  1AJB A;  4MIV A;  4LRF A;  3KD8 A;  1AUK A;  3SZY A;  4CXS A;  4TN0 A;  1EJJ A;  4LR2 A;  3IDD A;  4UPH A;  3T00 A;  4KJG A;  2GLQ A;  2IUC B;  3IGY B;  3SZZ A;  3E2D A;  4KAY A;  5L0B A;  1N2L A;  1KH7 A;  1ELX A;  1EQJ A;  3MK1 A;  1E2S P; 
#chains in the Genus database with same CATH homology
 5C66 A;  2D1G A;  4ZG9 A;  1ED9 A;  1KHJ A;  2GA3 A;  1HDH A;  4FDI A;  4KAV A;  4LRA A;  5L0K A;  4UOO A;  1SHN A;  3WAW A;  1ELY A;  3MK0 A;  2IFY A;  2RH6 A;  4MY4 A;  4ZGA A;  3M8Y A;  4FDJ A;  3NKR A;  4MHX A;  1HJK A;  1EW2 A;  3UNY A;  3LXQ A;  3DYC A;  3IGZ B;  2X98 A;  1ALI A;  1EW9 A;  1O98 A;  3T01 A;  4UPL A;  1AJA A;  4UOP A;  5L0E A;  3WAX A;  4YR1 A;  1ELZ A;  3UO0 A;  1URA A;  5LRM A;  5IJQ A;  1K7H A;  4NWJ A;  3WAV A;  3UN2 A;  2W5W A;  5TJ3 A;  2GSN A;  1Y6V A;  4LRC A;  3M8Z A;  4LR7 A;  2XR9 A;  4GTW A;  1EW8 A;  4UPK A;  3TX0 A;  4CXU A;  4N7T A;  2IUC A;  1HQA A;  3CMR A;  3ED4 A;  1KHN A;  1ALH A;  4LRE A;  5GOV A;  3TG0 A;  3MK2 A;  3NKM A;  1ALK A;  2ZKT A;  3WAY A;  1B8J A;  3B5Q A;  2W8S A;  4B56 A;  5DLT A;  4LRB A;  1EI6 A;  1KH4 A;  4CYS A;  2XRG A;  2W5R A;  1ZEF A;  2G9Y A;  4GTZ A;  1E33 P;  1Y7A A;  3T02 A;  4CYR A;  5HRT A;  3TWZ A;  5K4P A;  1ANI A;  5DLV A;  2W5X A;  3A52 A;  1KH9 A;  1ZEB A;  3NKN A;  4GTX A;  5KXA A;  2W5T A;  1AJC A;  3Q3Q A;  3UN5 A;  5LRN A;  3OT9 A;  2W5V A;  2W8D A;  3BDG B;  1KHL A;  5LIA A;  5LQQ A;  4KM4 A;  1O99 A;  2GSU A;  3BDH A;  1E1Z P;  1URB A;  3NVL A;  3WBH A;  4CXK A;  4QAX A;  1SHQ A;  3UN3 A;  5DLW A;  4LRD A;  1KHK A;  1FSU A;  4NWX A;  1AJD A;  5GRR A;  3NKO A;  2W5S A;  1P49 A;  1ANJ A;  2GSO A;  2ANH A;  1KH5 A;  4ZG7 A;  1N2K A;  4GTY A;  1E3C P;  4UPI A;  5INH A;  2VQR A;  4ZG6 A;  1ALJ A;  3NKQ A;  3NKP A;  5AJ9 A;  2W5Q A;  4LQY A;  3BDG A;  3DPC A;  4LR9 A;  4UOR A;  5EGE A;  2QZU A;  3M7V A;  3M8W A;  1ZED A;  4LR8 A;  1ED8 A;  3BDF A;  5EGH A;  4KJD A;  5IJS A;  1AJB A;  4MIV A;  4LRF A;  3KD8 A;  1AUK A;  3SZY A;  4CXS A;  4TN0 A;  1EJJ A;  4LR2 A;  3IDD A;  4UPH A;  3T00 A;  4KJG A;  2GLQ A;  2IUC B;  3IGY B;  3SZZ A;  3E2D A;  4KAY A;  5L0B A;  1N2L A;  1KH7 A;  1ELX A;  1EQJ A;  3MK1 A;  1E2S P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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