1ED9A

Structure of e. coli alkaline phosphatase without the inorganic phosphate at 1.75a resolution
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
449
structure length
449
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Escherichia coli
publication title A revised mechanism for the alkaline phosphatase reaction involving three metal ions.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
total genus 167
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2000-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ed9A00
3SZZA 4NWXA 4UOOA 5KXAA 1KH5A 3UN5A 4UPKA 3BDGB 1ANIA 4LRBA 3ED4A 2QZUA 3M8ZA 4CYRA 5L0BA 1E2SP 3NKMA 4UORA 1N2LA 1SHNA 3NKRA 2W5RA 4CXUA 5DLTA 5LRNA 5TJ3A 5L0EA 1KHJA 1ED8A 3MK1A 2RH6A 4KAYA 1E33P 1B8JA 1ALJA 5INHA 5EGHA 1EJJA 3BDHA 1EQJA 1N2KA 3BDFA 4ZG7A 3CMRA 3M7VA 1ANJA 2W5SA 3UO0A 1ZEDA 3T01A 1URAA 1ED9A 2GSNA 4KM4A 4LRAA 4LRFA 5GRRA 2XRGA 3WAYA 3BDGA 1K7HA 5LRMA 3NKQA 4GTXA 4KAVA 4KJGA 3WBHA 4LRCA 4UOPA 4YR1A 1AJDA 2W5XA 3IGZB 4MHXA 1EI6A 1P49A 2D1GA 2IUCB 4NWJA 4UPHA 5LQQA 3MK2A 1AJBA 4B56A 4ZGAA 1KHNA 5C66A 2W5QA 4CXKA 2W8SA 3UN2A 2W5TA 2GA3A 4LRDA 3NKPA 3SZYA 5IJSA 4LREA 2X98A 4MIVA 1ZEBA 2W5WA 1HDHA 1ZEFA 2ZKTA 3B5QA 1HJKA 3UNYA 3WAWA 3M8YA 3Q3QA 5L0KA 5DLWA 1ALKA 3NVLA 4KJDA 3TWZA 1ELXA 1URBA 2G9YA 3TX0A 1ALIA 5EGEA 3T02A 1KHLA 5DLVA 5HRTA 3WAVA 3A52A 1O99A 4GTWA 4QAXA 4TN0A 2VQRA 4GTYA 1ELYA 4ZG6A 1Y6VA 2IUCA 2W5VA 4N7TA 4LR9A 1KH4A 2IFYA 4CXSA 4ZG9A 3WAXA 1Y7AA 1KH9A 3M8WA 4MY4A 1FSUA 4FDIA 1AUKA 1E1ZP 5LIAA 1EW2A 4FDJA 2W8DA 3MK0A 1ELZA 4GTZA 5IJQA 2GLQA 4LQYA 3E2DA 3IDDA 5K4PA 4LR8A 2ANHA 2GSUA 3OT9A 3NKNA 4CYSA 1AJAA 3DPCA 3DYCA 1KH7A 1SHQA 3KD8A 1KHKA 4UPIA 2XR9A 5AJ9A 1HQAA 1EW8A 1E3CP 1EW9A 2GSOA 3T00A 1AJCA 1O98A 5GOVA 4LR2A 4LR7A 3TG0A 1ALHA 3IGYB 3NKOA 3UN3A 4UPLA 3LXQA
chains in the Genus database with same CATH superfamily
3SZZA 4NWXA 4UOOA 5KXAA 1KH5A 3UN5A 4UPKA 3BDGB 1ANIA 4LRBA 3ED4A 2QZUA 3M8ZA 4CYRA 5L0BA 1E2SP 3NKMA 4UORA 1N2LA 1SHNA 3NKRA 2W5RA 4CXUA 5DLTA 5LRNA 5TJ3A 5L0EA 1KHJA 1ED8A 3MK1A 2RH6A 4KAYA 1E33P 1B8JA 1ALJA 5INHA 5EGHA 1EJJA 3BDHA 1EQJA 1N2KA 3BDFA 4ZG7A 3CMRA 3M7VA 1ANJA 2W5SA 3UO0A 1ZEDA 3T01A 1URAA 1ED9A 2GSNA 4KM4A 4LRAA 4LRFA 5GRRA 2XRGA 3WAYA 3BDGA 1K7HA 5LRMA 3NKQA 4GTXA 4KAVA 4KJGA 3WBHA 4LRCA 4UOPA 4YR1A 1AJDA 2W5XA 3IGZB 4MHXA 1EI6A 1P49A 2D1GA 2IUCB 4NWJA 4UPHA 5LQQA 3MK2A 1AJBA 4B56A 4ZGAA 1KHNA 5C66A 2W5QA 4CXKA 2W8SA 3UN2A 2W5TA 2GA3A 4LRDA 3NKPA 3SZYA 5IJSA 4LREA 2X98A 4MIVA 1ZEBA 2W5WA 1HDHA 1ZEFA 2ZKTA 3B5QA 1HJKA 3UNYA 3WAWA 3M8YA 3Q3QA 5L0KA 5DLWA 1ALKA 3NVLA 4KJDA 3TWZA 1ELXA 1URBA 2G9YA 3TX0A 1ALIA 5EGEA 3T02A 1KHLA 5DLVA 5HRTA 3WAVA 3A52A 1O99A 4GTWA 4QAXA 4TN0A 2VQRA 4GTYA 1ELYA 4ZG6A 1Y6VA 2IUCA 2W5VA 4N7TA 4LR9A 1KH4A 2IFYA 4CXSA 4ZG9A 3WAXA 1Y7AA 1KH9A 3M8WA 4MY4A 1FSUA 4FDIA 1AUKA 1E1ZP 5LIAA 1EW2A 4FDJA 2W8DA 3MK0A 1ELZA 4GTZA 5IJQA 2GLQA 4LQYA 3E2DA 3IDDA 5K4PA 4LR8A 2ANHA 2GSUA 3OT9A 3NKNA 4CYSA 1AJAA 3DPCA 3DYCA 1KH7A 1SHQA 3KD8A 1KHKA 4UPIA 2XR9A 5AJ9A 1HQAA 1EW8A 1E3CP 1EW9A 2GSOA 3T00A 1AJCA 1O98A 5GOVA 4LR2A 4LR7A 3TG0A 1ALHA 3IGYB 3NKOA 3UN3A 4UPLA 3LXQA
chains in the Genus database with same CATH topology
3SZZA 4NWXA 4UOOA 5KXAA 1KH5A 3UN5A 4UPKA 3BDGB 1ANIA 4LRBA 3ED4A 2QZUA 3M8ZA 4CYRA 5L0BA 1E2SP 3NKMA 4UORA 1N2LA 1SHNA 3NKRA 2W5RA 4CXUA 5DLTA 5LRNA 5TJ3A 5L0EA 1KHJA 1ED8A 3MK1A 2RH6A 4KAYA 1E33P 1B8JA 1ALJA 5INHA 5EGHA 1EJJA 3BDHA 1EQJA 1N2KA 3BDFA 4ZG7A 3CMRA 3M7VA 1ANJA 2W5SA 3UO0A 1ZEDA 3T01A 1URAA 1ED9A 2GSNA 4KM4A 4LRAA 4LRFA 5GRRA 2XRGA 3WAYA 3BDGA 1K7HA 5LRMA 3NKQA 4GTXA 4KAVA 4KJGA 3WBHA 4LRCA 4UOPA 4YR1A 1AJDA 2W5XA 3IGZB 4MHXA 1EI6A 1P49A 2D1GA 2IUCB 4NWJA 4UPHA 5LQQA 3MK2A 1AJBA 4B56A 4ZGAA 1KHNA 5C66A 2W5QA 4CXKA 2W8SA 3UN2A 2W5TA 2GA3A 4LRDA 3NKPA 3SZYA 5IJSA 4LREA 2X98A 4MIVA 1ZEBA 2W5WA 1HDHA 1ZEFA 2ZKTA 3B5QA 1HJKA 3UNYA 3WAWA 3M8YA 3Q3QA 5L0KA 5DLWA 1ALKA 3NVLA 4KJDA 3TWZA 1ELXA 1URBA 2G9YA 3TX0A 1ALIA 5EGEA 3T02A 1KHLA 5DLVA 5HRTA 3WAVA 3A52A 1O99A 4GTWA 4QAXA 4TN0A 2VQRA 4GTYA 1ELYA 4ZG6A 1Y6VA 2IUCA 2W5VA 4N7TA 4LR9A 1KH4A 2IFYA 4CXSA 4ZG9A 3WAXA 1Y7AA 1KH9A 3M8WA 4MY4A 1FSUA 4FDIA 1AUKA 1E1ZP 5LIAA 1EW2A 4FDJA 2W8DA 3MK0A 1ELZA 4GTZA 5IJQA 2GLQA 4LQYA 3E2DA 3IDDA 5K4PA 4LR8A 2ANHA 2GSUA 3OT9A 3NKNA 4CYSA 1AJAA 3DPCA 3DYCA 1KH7A 1SHQA 3KD8A 1KHKA 4UPIA 2XR9A 5AJ9A 1HQAA 1EW8A 1E3CP 1EW9A 2GSOA 3T00A 1AJCA 1O98A 5GOVA 4LR2A 4LR7A 3TG0A 1ALHA 3IGYB 3NKOA 3UN3A 4UPLA 3LXQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SZZ A;  4NWX A;  4UOO A;  5KXA A;  1KH5 A;  3UN5 A;  4UPK A;  3BDG B;  1ANI A;  4LRB A;  3ED4 A;  2QZU A;  3M8Z A;  4CYR A;  5L0B A;  1E2S P;  3NKM A;  4UOR A;  1N2L A;  1SHN A;  3NKR A;  2W5R A;  4CXU A;  5DLT A;  5LRN A;  5TJ3 A;  5L0E A;  1KHJ A;  1ED8 A;  3MK1 A;  2RH6 A;  4KAY A;  1E33 P;  1B8J A;  1ALJ A;  5INH A;  5EGH A;  1EJJ A;  3BDH A;  1EQJ A;  1N2K A;  3BDF A;  4ZG7 A;  3CMR A;  3M7V A;  1ANJ A;  2W5S A;  3UO0 A;  1ZED A;  3T01 A;  1URA A;  1ED9 A;  2GSN A;  4KM4 A;  4LRA A;  4LRF A;  5GRR A;  2XRG A;  3WAY A;  3BDG A;  1K7H A;  5LRM A;  3NKQ A;  4GTX A;  4KAV A;  4KJG A;  3WBH A;  4LRC A;  4UOP A;  4YR1 A;  1AJD A;  2W5X A;  3IGZ B;  4MHX A;  1EI6 A;  1P49 A;  2D1G A;  2IUC B;  4NWJ A;  4UPH A;  5LQQ A;  3MK2 A;  1AJB A;  4B56 A;  4ZGA A;  1KHN A;  5C66 A;  2W5Q A;  4CXK A;  2W8S A;  3UN2 A;  2W5T A;  2GA3 A;  4LRD A;  3NKP A;  3SZY A;  5IJS A;  4LRE A;  2X98 A;  4MIV A;  1ZEB A;  2W5W A;  1HDH A;  1ZEF A;  2ZKT A;  3B5Q A;  1HJK A;  3UNY A;  3WAW A;  3M8Y A;  3Q3Q A;  5L0K A;  5DLW A;  1ALK A;  3NVL A;  4KJD A;  3TWZ A;  1ELX A;  1URB A;  2G9Y A;  3TX0 A;  1ALI A;  5EGE A;  3T02 A;  1KHL A;  5DLV A;  5HRT A;  3WAV A;  3A52 A;  1O99 A;  4GTW A;  4QAX A;  4TN0 A;  2VQR A;  4GTY A;  1ELY A;  4ZG6 A;  1Y6V A;  2IUC A;  2W5V A;  4N7T A;  4LR9 A;  1KH4 A;  2IFY A;  4CXS A;  4ZG9 A;  3WAX A;  1Y7A A;  1KH9 A;  3M8W A;  4MY4 A;  1FSU A;  4FDI A;  1AUK A;  1E1Z P;  5LIA A;  1EW2 A;  4FDJ A;  2W8D A;  3MK0 A;  1ELZ A;  4GTZ A;  5IJQ A;  2GLQ A;  4LQY A;  3E2D A;  3IDD A;  5K4P A;  4LR8 A;  2ANH A;  2GSU A;  3OT9 A;  3NKN A;  4CYS A;  1AJA A;  3DPC A;  3DYC A;  1KH7 A;  1SHQ A;  3KD8 A;  1KHK A;  4UPI A;  2XR9 A;  5AJ9 A;  1HQA A;  1EW8 A;  1E3C P;  1EW9 A;  2GSO A;  3T00 A;  1AJC A;  1O98 A;  5GOV A;  4LR2 A;  4LR7 A;  3TG0 A;  1ALH A;  3IGY B;  3NKO A;  3UN3 A;  4UPL A;  3LXQ A; 
#chains in the Genus database with same CATH topology
 3SZZ A;  4NWX A;  4UOO A;  5KXA A;  1KH5 A;  3UN5 A;  4UPK A;  3BDG B;  1ANI A;  4LRB A;  3ED4 A;  2QZU A;  3M8Z A;  4CYR A;  5L0B A;  1E2S P;  3NKM A;  4UOR A;  1N2L A;  1SHN A;  3NKR A;  2W5R A;  4CXU A;  5DLT A;  5LRN A;  5TJ3 A;  5L0E A;  1KHJ A;  1ED8 A;  3MK1 A;  2RH6 A;  4KAY A;  1E33 P;  1B8J A;  1ALJ A;  5INH A;  5EGH A;  1EJJ A;  3BDH A;  1EQJ A;  1N2K A;  3BDF A;  4ZG7 A;  3CMR A;  3M7V A;  1ANJ A;  2W5S A;  3UO0 A;  1ZED A;  3T01 A;  1URA A;  1ED9 A;  2GSN A;  4KM4 A;  4LRA A;  4LRF A;  5GRR A;  2XRG A;  3WAY A;  3BDG A;  1K7H A;  5LRM A;  3NKQ A;  4GTX A;  4KAV A;  4KJG A;  3WBH A;  4LRC A;  4UOP A;  4YR1 A;  1AJD A;  2W5X A;  3IGZ B;  4MHX A;  1EI6 A;  1P49 A;  2D1G A;  2IUC B;  4NWJ A;  4UPH A;  5LQQ A;  3MK2 A;  1AJB A;  4B56 A;  4ZGA A;  1KHN A;  5C66 A;  2W5Q A;  4CXK A;  2W8S A;  3UN2 A;  2W5T A;  2GA3 A;  4LRD A;  3NKP A;  3SZY A;  5IJS A;  4LRE A;  2X98 A;  4MIV A;  1ZEB A;  2W5W A;  1HDH A;  1ZEF A;  2ZKT A;  3B5Q A;  1HJK A;  3UNY A;  3WAW A;  3M8Y A;  3Q3Q A;  5L0K A;  5DLW A;  1ALK A;  3NVL A;  4KJD A;  3TWZ A;  1ELX A;  1URB A;  2G9Y A;  3TX0 A;  1ALI A;  5EGE A;  3T02 A;  1KHL A;  5DLV A;  5HRT A;  3WAV A;  3A52 A;  1O99 A;  4GTW A;  4QAX A;  4TN0 A;  2VQR A;  4GTY A;  1ELY A;  4ZG6 A;  1Y6V A;  2IUC A;  2W5V A;  4N7T A;  4LR9 A;  1KH4 A;  2IFY A;  4CXS A;  4ZG9 A;  3WAX A;  1Y7A A;  1KH9 A;  3M8W A;  4MY4 A;  1FSU A;  4FDI A;  1AUK A;  1E1Z P;  5LIA A;  1EW2 A;  4FDJ A;  2W8D A;  3MK0 A;  1ELZ A;  4GTZ A;  5IJQ A;  2GLQ A;  4LQY A;  3E2D A;  3IDD A;  5K4P A;  4LR8 A;  2ANH A;  2GSU A;  3OT9 A;  3NKN A;  4CYS A;  1AJA A;  3DPC A;  3DYC A;  1KH7 A;  1SHQ A;  3KD8 A;  1KHK A;  4UPI A;  2XR9 A;  5AJ9 A;  1HQA A;  1EW8 A;  1E3C P;  1EW9 A;  2GSO A;  3T00 A;  1AJC A;  1O98 A;  5GOV A;  4LR2 A;  4LR7 A;  3TG0 A;  1ALH A;  3IGY B;  3NKO A;  3UN3 A;  4UPL A;  3LXQ A; 
#chains in the Genus database with same CATH homology
 3SZZ A;  4NWX A;  4UOO A;  5KXA A;  1KH5 A;  3UN5 A;  4UPK A;  3BDG B;  1ANI A;  4LRB A;  3ED4 A;  2QZU A;  3M8Z A;  4CYR A;  5L0B A;  1E2S P;  3NKM A;  4UOR A;  1N2L A;  1SHN A;  3NKR A;  2W5R A;  4CXU A;  5DLT A;  5LRN A;  5TJ3 A;  5L0E A;  1KHJ A;  1ED8 A;  3MK1 A;  2RH6 A;  4KAY A;  1E33 P;  1B8J A;  1ALJ A;  5INH A;  5EGH A;  1EJJ A;  3BDH A;  1EQJ A;  1N2K A;  3BDF A;  4ZG7 A;  3CMR A;  3M7V A;  1ANJ A;  2W5S A;  3UO0 A;  1ZED A;  3T01 A;  1URA A;  1ED9 A;  2GSN A;  4KM4 A;  4LRA A;  4LRF A;  5GRR A;  2XRG A;  3WAY A;  3BDG A;  1K7H A;  5LRM A;  3NKQ A;  4GTX A;  4KAV A;  4KJG A;  3WBH A;  4LRC A;  4UOP A;  4YR1 A;  1AJD A;  2W5X A;  3IGZ B;  4MHX A;  1EI6 A;  1P49 A;  2D1G A;  2IUC B;  4NWJ A;  4UPH A;  5LQQ A;  3MK2 A;  1AJB A;  4B56 A;  4ZGA A;  1KHN A;  5C66 A;  2W5Q A;  4CXK A;  2W8S A;  3UN2 A;  2W5T A;  2GA3 A;  4LRD A;  3NKP A;  3SZY A;  5IJS A;  4LRE A;  2X98 A;  4MIV A;  1ZEB A;  2W5W A;  1HDH A;  1ZEF A;  2ZKT A;  3B5Q A;  1HJK A;  3UNY A;  3WAW A;  3M8Y A;  3Q3Q A;  5L0K A;  5DLW A;  1ALK A;  3NVL A;  4KJD A;  3TWZ A;  1ELX A;  1URB A;  2G9Y A;  3TX0 A;  1ALI A;  5EGE A;  3T02 A;  1KHL A;  5DLV A;  5HRT A;  3WAV A;  3A52 A;  1O99 A;  4GTW A;  4QAX A;  4TN0 A;  2VQR A;  4GTY A;  1ELY A;  4ZG6 A;  1Y6V A;  2IUC A;  2W5V A;  4N7T A;  4LR9 A;  1KH4 A;  2IFY A;  4CXS A;  4ZG9 A;  3WAX A;  1Y7A A;  1KH9 A;  3M8W A;  4MY4 A;  1FSU A;  4FDI A;  1AUK A;  1E1Z P;  5LIA A;  1EW2 A;  4FDJ A;  2W8D A;  3MK0 A;  1ELZ A;  4GTZ A;  5IJQ A;  2GLQ A;  4LQY A;  3E2D A;  3IDD A;  5K4P A;  4LR8 A;  2ANH A;  2GSU A;  3OT9 A;  3NKN A;  4CYS A;  1AJA A;  3DPC A;  3DYC A;  1KH7 A;  1SHQ A;  3KD8 A;  1KHK A;  4UPI A;  2XR9 A;  5AJ9 A;  1HQA A;  1EW8 A;  1E3C P;  1EW9 A;  2GSO A;  3T00 A;  1AJC A;  1O98 A;  5GOV A;  4LR2 A;  4LR7 A;  3TG0 A;  1ALH A;  3IGY B;  3NKO A;  3UN3 A;  4UPL A;  3LXQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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