1O98A

1.4a crystal structure of phosphoglycerate mutase from bacillus stearothermophilus complexed with 2-phosphoglycerate
Total Genus 199
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
199
Knots found
sequence length
509
structure length
509
Chain Sequence
b'SKKPVALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHTTLKACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTYRDPLECIEDSYKHGIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRDGGILGDLAPTMLDLLGLPQPKEMTGKSLIV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
publication title Insights Into the Catalytic Mechanism of Cofactor-Independent Phosphoglycerate Mutase from X-Ray Crystallography, Simulated Dynamics and Molecular Modeling
pubmed doi rcsb
source organism Bacillus stearothermophilus
molecule tags Isomerase
total genus 199
structure length 509
sequence length 509
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2002-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1o98A02
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 1o98A01
3T01A 1URBA 3E2DA 1E3CP 3BDGA 3T02A 3BDFA 1O98A 4UOPA 4UPLA 3MK0A 4KAVA 3KD8A 4LRDA 3NKMA 4MHXA 4UPHA 1KHNA 5DLWA 1KH4A 2ANHA 3CMRA 3LXQA 4FDJA 4YR1A 1SHNA 1EJJA 4N7TA 5GRRA 2W5SA 4LQYA 3SZZA 4CXUA 3M8WA 1HJKA 4UOOA 3ED4A 5C66A 1ZEFA 3M7VA 2GSUA 4GTXA 1E1ZP 4B56A 3TX0A 4UPKA 1FSUA 1AUKA 3UO0A 5AJ9A 1O99A 2W5RA 5LRMA 2W5WA 3B5QA 1E2SP 1E33P 1ED8A 2W5XA 3TWZA 4CXSA 3NKQA 4LRFA 5K4PA 3UN5A 2X98A 4LR7A 2XRGA 5TJ3A 5L0KA 3BDGB 4FDIA 5DLTA 3M8YA 1URAA 2VQRA 5L0EA 3M8ZA 4MIVA 1ELXA 1KH7A 1ALKA 4KM4A 4CYRA 3WAWA 4LR8A 5HRTA 2IUCA 1Y7AA 3IGYB 2GSNA 1EW9A 2G9YA 1AJDA 2ZKTA 2GLQA 1AJBA 1ELYA 5INHA 1EW8A 3WAVA 3NKRA 5EGEA 4TN0A 4ZG9A 1N2KA 3A52A 3WAYA 1HQAA 3DPCA 1ALJA 4LR2A 1AJCA 1SHQA 1ZEDA 3WBHA 4GTWA 1ELZA 5DLVA 1ED9A 3UN2A 4NWXA 3MK2A 4UORA 1ALIA 3WAXA 4QAXA 3OT9A 2IUCB 1KH9A 1ANJA 2W8DA 4LR9A 1B8JA 4MY4A 2W8SA 1AJAA 4GTYA 5L0BA 5LRNA 4KJDA 2XR9A 4LRAA 5LQQA 1EI6A 4NWJA 2W5VA 3UNYA 3TG0A 3NKOA 4LRCA 1ZEBA 4LREA 1HDHA 3Q3QA 2D1GA 5IJQA 3IDDA 4UPIA 2GA3A 3NKNA 1KHJA 1KHKA 5LIAA 1K7HA 3DYCA 1ALHA 1EQJA 2IFYA 1N2LA 1P49A 1Y6VA 4CYSA 1EW2A 3IGZB 4GTZA 5EGHA 2GSOA 3T00A 4ZG6A 3SZYA 2QZUA 3BDHA 1KH5A 1ANIA 2W5TA 3UN3A 4ZG7A 4ZGAA 3NKPA 4KAYA 5KXAA 5IJSA 1KHLA 4CXKA 4LRBA 5GOVA 3MK1A 4KJGA 3NVLA 2RH6A 2W5QA
chains in the Genus database with same CATH superfamily
3T01A 1URBA 3E2DA 1E3CP 3BDGA 3T02A 3BDFA 1O98A 4UOPA 4UPLA 3MK0A 4KAVA 3KD8A 4LRDA 3NKMA 4MHXA 4UPHA 1KHNA 5DLWA 1KH4A 2ANHA 3CMRA 3LXQA 4FDJA 4YR1A 1SHNA 1EJJA 4N7TA 5GRRA 2W5SA 4LQYA 3SZZA 4CXUA 3M8WA 1HJKA 4UOOA 3ED4A 5C66A 1ZEFA 3M7VA 2GSUA 4GTXA 1E1ZP 4B56A 3TX0A 4UPKA 1FSUA 1AUKA 3UO0A 5AJ9A 1O99A 2W5RA 5LRMA 2W5WA 3B5QA 1E2SP 1E33P 1ED8A 2W5XA 3TWZA 4CXSA 3NKQA 4LRFA 5K4PA 3UN5A 2X98A 4LR7A 2XRGA 5TJ3A 5L0KA 3BDGB 4FDIA 5DLTA 3M8YA 1URAA 2VQRA 5L0EA 3M8ZA 4MIVA 1ELXA 1KH7A 1ALKA 4KM4A 4CYRA 3WAWA 4LR8A 5HRTA 2IUCA 1Y7AA 3IGYB 2GSNA 1EW9A 2G9YA 1AJDA 2ZKTA 2GLQA 1AJBA 1ELYA 5INHA 1EW8A 3WAVA 3NKRA 5EGEA 4TN0A 4ZG9A 1N2KA 3A52A 3WAYA 1HQAA 3DPCA 1ALJA 4LR2A 1AJCA 1SHQA 1ZEDA 3WBHA 4GTWA 1ELZA 5DLVA 1ED9A 3UN2A 4NWXA 3MK2A 4UORA 1ALIA 3WAXA 4QAXA 3OT9A 2IUCB 1KH9A 1ANJA 2W8DA 4LR9A 1B8JA 4MY4A 2W8SA 1AJAA 4GTYA 5L0BA 5LRNA 4KJDA 2XR9A 4LRAA 5LQQA 1EI6A 4NWJA 2W5VA 3UNYA 3TG0A 3NKOA 4LRCA 1ZEBA 4LREA 1HDHA 3Q3QA 2D1GA 5IJQA 3IDDA 4UPIA 2GA3A 3NKNA 1KHJA 1KHKA 5LIAA 1K7HA 3DYCA 1ALHA 1EQJA 2IFYA 1N2LA 1P49A 1Y6VA 4CYSA 1EW2A 3IGZB 4GTZA 5EGHA 2GSOA 3T00A 4ZG6A 3SZYA 2QZUA 3BDHA 1KH5A 1ANIA 2W5TA 3UN3A 4ZG7A 4ZGAA 3NKPA 4KAYA 5KXAA 5IJSA 1KHLA 4CXKA 4LRBA 5GOVA 3MK1A 4KJGA 3NVLA 2RH6A 2W5QA
chains in the Genus database with same CATH topology
3T01A 1URBA 3E2DA 1E3CP 3BDGA 3T02A 3BDFA 1O98A 4UOPA 4UPLA 3MK0A 4KAVA 3KD8A 4LRDA 3NKMA 4MHXA 4UPHA 1KHNA 5DLWA 1KH4A 2ANHA 3CMRA 3LXQA 4FDJA 4YR1A 1SHNA 1EJJA 4N7TA 5GRRA 2W5SA 4LQYA 3SZZA 4CXUA 3M8WA 1HJKA 4UOOA 3ED4A 5C66A 1ZEFA 3M7VA 2GSUA 4GTXA 1E1ZP 4B56A 3TX0A 4UPKA 1FSUA 1AUKA 3UO0A 5AJ9A 1O99A 2W5RA 5LRMA 2W5WA 3B5QA 1E2SP 1E33P 1ED8A 2W5XA 3TWZA 4CXSA 3NKQA 4LRFA 5K4PA 3UN5A 2X98A 4LR7A 2XRGA 5TJ3A 5L0KA 3BDGB 4FDIA 5DLTA 3M8YA 1URAA 2VQRA 5L0EA 3M8ZA 4MIVA 1ELXA 1KH7A 1ALKA 4KM4A 4CYRA 3WAWA 4LR8A 5HRTA 2IUCA 1Y7AA 3IGYB 2GSNA 1EW9A 2G9YA 1AJDA 2ZKTA 2GLQA 1AJBA 1ELYA 5INHA 1EW8A 3WAVA 3NKRA 5EGEA 4TN0A 4ZG9A 1N2KA 3A52A 3WAYA 1HQAA 3DPCA 1ALJA 4LR2A 1AJCA 1SHQA 1ZEDA 3WBHA 4GTWA 1ELZA 5DLVA 1ED9A 3UN2A 4NWXA 3MK2A 4UORA 1ALIA 3WAXA 4QAXA 3OT9A 2IUCB 1KH9A 1ANJA 2W8DA 4LR9A 1B8JA 4MY4A 2W8SA 1AJAA 4GTYA 5L0BA 5LRNA 4KJDA 2XR9A 4LRAA 5LQQA 1EI6A 4NWJA 2W5VA 3UNYA 3TG0A 3NKOA 4LRCA 1ZEBA 4LREA 1HDHA 3Q3QA 2D1GA 5IJQA 3IDDA 4UPIA 2GA3A 3NKNA 1KHJA 1KHKA 5LIAA 1K7HA 3DYCA 1ALHA 1EQJA 2IFYA 1N2LA 1P49A 1Y6VA 4CYSA 1EW2A 3IGZB 4GTZA 5EGHA 2GSOA 3T00A 4ZG6A 3SZYA 2QZUA 3BDHA 1KH5A 1ANIA 2W5TA 3UN3A 4ZG7A 4ZGAA 3NKPA 4KAYA 5KXAA 5IJSA 1KHLA 4CXKA 4LRBA 5GOVA 3MK1A 4KJGA 3NVLA 2RH6A 2W5QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T01 A;  1URB A;  3E2D A;  1E3C P;  3BDG A;  3T02 A;  3BDF A;  1O98 A;  4UOP A;  4UPL A;  3MK0 A;  4KAV A;  3KD8 A;  4LRD A;  3NKM A;  4MHX A;  4UPH A;  1KHN A;  5DLW A;  1KH4 A;  2ANH A;  3CMR A;  3LXQ A;  4FDJ A;  4YR1 A;  1SHN A;  1EJJ A;  4N7T A;  5GRR A;  2W5S A;  4LQY A;  3SZZ A;  4CXU A;  3M8W A;  1HJK A;  4UOO A;  3ED4 A;  5C66 A;  1ZEF A;  3M7V A;  2GSU A;  4GTX A;  1E1Z P;  4B56 A;  3TX0 A;  4UPK A;  1FSU A;  1AUK A;  3UO0 A;  5AJ9 A;  1O99 A;  2W5R A;  5LRM A;  2W5W A;  3B5Q A;  1E2S P;  1E33 P;  1ED8 A;  2W5X A;  3TWZ A;  4CXS A;  3NKQ A;  4LRF A;  5K4P A;  3UN5 A;  2X98 A;  4LR7 A;  2XRG A;  5TJ3 A;  5L0K A;  3BDG B;  4FDI A;  5DLT A;  3M8Y A;  1URA A;  2VQR A;  5L0E A;  3M8Z A;  4MIV A;  1ELX A;  1KH7 A;  1ALK A;  4KM4 A;  4CYR A;  3WAW A;  4LR8 A;  5HRT A;  2IUC A;  1Y7A A;  3IGY B;  2GSN A;  1EW9 A;  2G9Y A;  1AJD A;  2ZKT A;  2GLQ A;  1AJB A;  1ELY A;  5INH A;  1EW8 A;  3WAV A;  3NKR A;  5EGE A;  4TN0 A;  4ZG9 A;  1N2K A;  3A52 A;  3WAY A;  1HQA A;  3DPC A;  1ALJ A;  4LR2 A;  1AJC A;  1SHQ A;  1ZED A;  3WBH A;  4GTW A;  1ELZ A;  5DLV A;  1ED9 A;  3UN2 A;  4NWX A;  3MK2 A;  4UOR A;  1ALI A;  3WAX A;  4QAX A;  3OT9 A;  2IUC B;  1KH9 A;  1ANJ A;  2W8D A;  4LR9 A;  1B8J A;  4MY4 A;  2W8S A;  1AJA A;  4GTY A;  5L0B A;  5LRN A;  4KJD A;  2XR9 A;  4LRA A;  5LQQ A;  1EI6 A;  4NWJ A;  2W5V A;  3UNY A;  3TG0 A;  3NKO A;  4LRC A;  1ZEB A;  4LRE A;  1HDH A;  3Q3Q A;  2D1G A;  5IJQ A;  3IDD A;  4UPI A;  2GA3 A;  3NKN A;  1KHJ A;  1KHK A;  5LIA A;  1K7H A;  3DYC A;  1ALH A;  1EQJ A;  2IFY A;  1N2L A;  1P49 A;  1Y6V A;  4CYS A;  1EW2 A;  3IGZ B;  4GTZ A;  5EGH A;  2GSO A;  3T00 A;  4ZG6 A;  3SZY A;  2QZU A;  3BDH A;  1KH5 A;  1ANI A;  2W5T A;  3UN3 A;  4ZG7 A;  4ZGA A;  3NKP A;  4KAY A;  5KXA A;  5IJS A;  1KHL A;  4CXK A;  4LRB A;  5GOV A;  3MK1 A;  4KJG A;  3NVL A;  2RH6 A;  2W5Q A; 
#chains in the Genus database with same CATH topology
 3T01 A;  1URB A;  3E2D A;  1E3C P;  3BDG A;  3T02 A;  3BDF A;  1O98 A;  4UOP A;  4UPL A;  3MK0 A;  4KAV A;  3KD8 A;  4LRD A;  3NKM A;  4MHX A;  4UPH A;  1KHN A;  5DLW A;  1KH4 A;  2ANH A;  3CMR A;  3LXQ A;  4FDJ A;  4YR1 A;  1SHN A;  1EJJ A;  4N7T A;  5GRR A;  2W5S A;  4LQY A;  3SZZ A;  4CXU A;  3M8W A;  1HJK A;  4UOO A;  3ED4 A;  5C66 A;  1ZEF A;  3M7V A;  2GSU A;  4GTX A;  1E1Z P;  4B56 A;  3TX0 A;  4UPK A;  1FSU A;  1AUK A;  3UO0 A;  5AJ9 A;  1O99 A;  2W5R A;  5LRM A;  2W5W A;  3B5Q A;  1E2S P;  1E33 P;  1ED8 A;  2W5X A;  3TWZ A;  4CXS A;  3NKQ A;  4LRF A;  5K4P A;  3UN5 A;  2X98 A;  4LR7 A;  2XRG A;  5TJ3 A;  5L0K A;  3BDG B;  4FDI A;  5DLT A;  3M8Y A;  1URA A;  2VQR A;  5L0E A;  3M8Z A;  4MIV A;  1ELX A;  1KH7 A;  1ALK A;  4KM4 A;  4CYR A;  3WAW A;  4LR8 A;  5HRT A;  2IUC A;  1Y7A A;  3IGY B;  2GSN A;  1EW9 A;  2G9Y A;  1AJD A;  2ZKT A;  2GLQ A;  1AJB A;  1ELY A;  5INH A;  1EW8 A;  3WAV A;  3NKR A;  5EGE A;  4TN0 A;  4ZG9 A;  1N2K A;  3A52 A;  3WAY A;  1HQA A;  3DPC A;  1ALJ A;  4LR2 A;  1AJC A;  1SHQ A;  1ZED A;  3WBH A;  4GTW A;  1ELZ A;  5DLV A;  1ED9 A;  3UN2 A;  4NWX A;  3MK2 A;  4UOR A;  1ALI A;  3WAX A;  4QAX A;  3OT9 A;  2IUC B;  1KH9 A;  1ANJ A;  2W8D A;  4LR9 A;  1B8J A;  4MY4 A;  2W8S A;  1AJA A;  4GTY A;  5L0B A;  5LRN A;  4KJD A;  2XR9 A;  4LRA A;  5LQQ A;  1EI6 A;  4NWJ A;  2W5V A;  3UNY A;  3TG0 A;  3NKO A;  4LRC A;  1ZEB A;  4LRE A;  1HDH A;  3Q3Q A;  2D1G A;  5IJQ A;  3IDD A;  4UPI A;  2GA3 A;  3NKN A;  1KHJ A;  1KHK A;  5LIA A;  1K7H A;  3DYC A;  1ALH A;  1EQJ A;  2IFY A;  1N2L A;  1P49 A;  1Y6V A;  4CYS A;  1EW2 A;  3IGZ B;  4GTZ A;  5EGH A;  2GSO A;  3T00 A;  4ZG6 A;  3SZY A;  2QZU A;  3BDH A;  1KH5 A;  1ANI A;  2W5T A;  3UN3 A;  4ZG7 A;  4ZGA A;  3NKP A;  4KAY A;  5KXA A;  5IJS A;  1KHL A;  4CXK A;  4LRB A;  5GOV A;  3MK1 A;  4KJG A;  3NVL A;  2RH6 A;  2W5Q A; 
#chains in the Genus database with same CATH homology
 3T01 A;  1URB A;  3E2D A;  1E3C P;  3BDG A;  3T02 A;  3BDF A;  1O98 A;  4UOP A;  4UPL A;  3MK0 A;  4KAV A;  3KD8 A;  4LRD A;  3NKM A;  4MHX A;  4UPH A;  1KHN A;  5DLW A;  1KH4 A;  2ANH A;  3CMR A;  3LXQ A;  4FDJ A;  4YR1 A;  1SHN A;  1EJJ A;  4N7T A;  5GRR A;  2W5S A;  4LQY A;  3SZZ A;  4CXU A;  3M8W A;  1HJK A;  4UOO A;  3ED4 A;  5C66 A;  1ZEF A;  3M7V A;  2GSU A;  4GTX A;  1E1Z P;  4B56 A;  3TX0 A;  4UPK A;  1FSU A;  1AUK A;  3UO0 A;  5AJ9 A;  1O99 A;  2W5R A;  5LRM A;  2W5W A;  3B5Q A;  1E2S P;  1E33 P;  1ED8 A;  2W5X A;  3TWZ A;  4CXS A;  3NKQ A;  4LRF A;  5K4P A;  3UN5 A;  2X98 A;  4LR7 A;  2XRG A;  5TJ3 A;  5L0K A;  3BDG B;  4FDI A;  5DLT A;  3M8Y A;  1URA A;  2VQR A;  5L0E A;  3M8Z A;  4MIV A;  1ELX A;  1KH7 A;  1ALK A;  4KM4 A;  4CYR A;  3WAW A;  4LR8 A;  5HRT A;  2IUC A;  1Y7A A;  3IGY B;  2GSN A;  1EW9 A;  2G9Y A;  1AJD A;  2ZKT A;  2GLQ A;  1AJB A;  1ELY A;  5INH A;  1EW8 A;  3WAV A;  3NKR A;  5EGE A;  4TN0 A;  4ZG9 A;  1N2K A;  3A52 A;  3WAY A;  1HQA A;  3DPC A;  1ALJ A;  4LR2 A;  1AJC A;  1SHQ A;  1ZED A;  3WBH A;  4GTW A;  1ELZ A;  5DLV A;  1ED9 A;  3UN2 A;  4NWX A;  3MK2 A;  4UOR A;  1ALI A;  3WAX A;  4QAX A;  3OT9 A;  2IUC B;  1KH9 A;  1ANJ A;  2W8D A;  4LR9 A;  1B8J A;  4MY4 A;  2W8S A;  1AJA A;  4GTY A;  5L0B A;  5LRN A;  4KJD A;  2XR9 A;  4LRA A;  5LQQ A;  1EI6 A;  4NWJ A;  2W5V A;  3UNY A;  3TG0 A;  3NKO A;  4LRC A;  1ZEB A;  4LRE A;  1HDH A;  3Q3Q A;  2D1G A;  5IJQ A;  3IDD A;  4UPI A;  2GA3 A;  3NKN A;  1KHJ A;  1KHK A;  5LIA A;  1K7H A;  3DYC A;  1ALH A;  1EQJ A;  2IFY A;  1N2L A;  1P49 A;  1Y6V A;  4CYS A;  1EW2 A;  3IGZ B;  4GTZ A;  5EGH A;  2GSO A;  3T00 A;  4ZG6 A;  3SZY A;  2QZU A;  3BDH A;  1KH5 A;  1ANI A;  2W5T A;  3UN3 A;  4ZG7 A;  4ZGA A;  3NKP A;  4KAY A;  5KXA A;  5IJS A;  1KHL A;  4CXK A;  4LRB A;  5GOV A;  3MK1 A;  4KJG A;  3NVL A;  2RH6 A;  2W5Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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