1ZEFA

Structure of alkaline phosphatase from human placenta in complex with its uncompetitive inhibitor l-phe
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
Knots found
sequence length
481
structure length
480
Chain Sequence
IIPVEEENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPEIPLAMDRFPYVALSKTYNVDKHVPDGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISNMDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAKRQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRDSTLDPSLMEMTEAALRLLSRNPRGFFLFVEGGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKAYTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFAACLEPYTACDLAPPAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Alkaline phosphatase
publication title Structural Studies of Human Placental Alkaline Phosphatase in Complex with Functional Ligands.
pubmed doi rcsb
molecule tags Hydrolase
total genus 176
structure length 480
sequence length 481
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2005-04-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1zefA00
3NKMA 2W8DA 3ED4A 3NKRA 1KH9A 3T01A 1E3CP 3NVLA 5DLTA 3M7VA 1K7HA 5L0BA 1KH4A 4KAVA 4UOOA 3UNYA 4CYSA 2W5SA 3NKNA 3OT9A 1ELXA 2W5QA 5EGEA 3WAYA 5K4PA 2IFYA 4N7TA 1KHNA 2W5TA 3MK1A 3Q3QA 4CXKA 1AJAA 5TJ3A 2ANHA 1URAA 3MK0A 4LRFA 4NWXA 5HRTA 2W5VA 1EJJA 3M8ZA 1EW9A 1ZEDA 3DPCA 4KJGA 5GOVA 3T02A 3TG0A 4MY4A 2G9YA 4CXUA 3IGYB 1KH5A 1Y6VA 1ED9A 1P49A 4KM4A 4LRAA 1SHQA 4CXSA 2W5XA 4GTWA 1EI6A 3BDFA 2W5RA 1O98A 5LRMA 3SZZA 4TN0A 2XR9A 2GLQA 2GSNA 1N2KA 5LIAA 1ZEFA 3UN3A 1AJBA 1ZEBA 1Y7AA 1EQJA 2W8SA 1B8JA 3NKOA 4GTYA 2IUCB 4UPHA 4CYRA 2D1GA 1E2SP 5IJSA 4GTXA 1HJKA 4LREA 3A52A 4MHXA 1ED8A 1KHKA 5L0KA 3T00A 3TX0A 3M8YA 3UO0A 5C66A 1ANIA 3E2DA 1ALIA 1AUKA 1HQAA 4ZG9A 1ALHA 3WBHA 4LR2A 5LQQA 1ALJA 4UORA 4ZG6A 5KXAA 1ALKA 4LQYA 5LRNA 3WAWA 1KHLA 3TWZA 3WAXA 5DLVA 3UN2A 2IUCA 1KH7A 3NKQA 5GRRA 4KJDA 3IDDA 3BDHA 3LXQA 4UPLA 3CMRA 1ANJA 4NWJA 3BDGB 3MK2A 1AJCA 3M8WA 1E1ZP 4FDJA 1E33P 4FDIA 2RH6A 1AJDA 4KAYA 4LRCA 3UN5A 1HDHA 3IGZB 5AJ9A 3WAVA 4ZGAA 5L0EA 4LR8A 4B56A 1SHNA 4QAXA 5IJQA 4YR1A 4LRDA 2GSUA 3NKPA 4UOPA 5DLWA 5INHA 4ZG7A 2GSOA 3DYCA 1FSUA 1N2LA 2W5WA 1EW8A 4LR7A 2ZKTA 2XRGA 4UPIA 4MIVA 2QZUA 2VQRA 4LRBA 1O99A 1EW2A 3SZYA 4LR9A 4UPKA 2X98A 1ELYA 4GTZA 1ELZA 1KHJA 3KD8A 1URBA 5EGHA 3BDGA 2GA3A 3B5QA
chains in the Genus database with same CATH superfamily
3NKMA 2W8DA 3ED4A 3NKRA 1KH9A 3T01A 1E3CP 3NVLA 5DLTA 3M7VA 1K7HA 5L0BA 1KH4A 4KAVA 4UOOA 3UNYA 4CYSA 2W5SA 3NKNA 3OT9A 1ELXA 2W5QA 5EGEA 3WAYA 5K4PA 2IFYA 4N7TA 1KHNA 2W5TA 3MK1A 3Q3QA 4CXKA 1AJAA 5TJ3A 2ANHA 1URAA 3MK0A 4LRFA 4NWXA 5HRTA 2W5VA 1EJJA 3M8ZA 1EW9A 1ZEDA 3DPCA 4KJGA 5GOVA 3T02A 3TG0A 4MY4A 2G9YA 4CXUA 3IGYB 1KH5A 1Y6VA 1ED9A 1P49A 4KM4A 4LRAA 1SHQA 4CXSA 2W5XA 4GTWA 1EI6A 3BDFA 2W5RA 1O98A 5LRMA 3SZZA 4TN0A 2XR9A 2GLQA 2GSNA 1N2KA 5LIAA 1ZEFA 3UN3A 1AJBA 1ZEBA 1Y7AA 1EQJA 2W8SA 1B8JA 3NKOA 4GTYA 2IUCB 4UPHA 4CYRA 2D1GA 1E2SP 5IJSA 4GTXA 1HJKA 4LREA 3A52A 4MHXA 1ED8A 1KHKA 5L0KA 3T00A 3TX0A 3M8YA 3UO0A 5C66A 1ANIA 3E2DA 1ALIA 1AUKA 1HQAA 4ZG9A 1ALHA 3WBHA 4LR2A 5LQQA 1ALJA 4UORA 4ZG6A 5KXAA 1ALKA 4LQYA 5LRNA 3WAWA 1KHLA 3TWZA 3WAXA 5DLVA 3UN2A 2IUCA 1KH7A 3NKQA 5GRRA 4KJDA 3IDDA 3BDHA 3LXQA 4UPLA 3CMRA 1ANJA 4NWJA 3BDGB 3MK2A 1AJCA 3M8WA 1E1ZP 4FDJA 1E33P 4FDIA 2RH6A 1AJDA 4KAYA 4LRCA 3UN5A 1HDHA 3IGZB 5AJ9A 3WAVA 4ZGAA 5L0EA 4LR8A 4B56A 1SHNA 4QAXA 5IJQA 4YR1A 4LRDA 2GSUA 3NKPA 4UOPA 5DLWA 5INHA 4ZG7A 2GSOA 3DYCA 1FSUA 1N2LA 2W5WA 1EW8A 4LR7A 2ZKTA 2XRGA 4UPIA 4MIVA 2QZUA 2VQRA 4LRBA 1O99A 1EW2A 3SZYA 4LR9A 4UPKA 2X98A 1ELYA 4GTZA 1ELZA 1KHJA 3KD8A 1URBA 5EGHA 3BDGA 2GA3A 3B5QA
chains in the Genus database with same CATH topology
3NKMA 2W8DA 3ED4A 3NKRA 1KH9A 3T01A 1E3CP 3NVLA 5DLTA 3M7VA 1K7HA 5L0BA 1KH4A 4KAVA 4UOOA 3UNYA 4CYSA 2W5SA 3NKNA 3OT9A 1ELXA 2W5QA 5EGEA 3WAYA 5K4PA 2IFYA 4N7TA 1KHNA 2W5TA 3MK1A 3Q3QA 4CXKA 1AJAA 5TJ3A 2ANHA 1URAA 3MK0A 4LRFA 4NWXA 5HRTA 2W5VA 1EJJA 3M8ZA 1EW9A 1ZEDA 3DPCA 4KJGA 5GOVA 3T02A 3TG0A 4MY4A 2G9YA 4CXUA 3IGYB 1KH5A 1Y6VA 1ED9A 1P49A 4KM4A 4LRAA 1SHQA 4CXSA 2W5XA 4GTWA 1EI6A 3BDFA 2W5RA 1O98A 5LRMA 3SZZA 4TN0A 2XR9A 2GLQA 2GSNA 1N2KA 5LIAA 1ZEFA 3UN3A 1AJBA 1ZEBA 1Y7AA 1EQJA 2W8SA 1B8JA 3NKOA 4GTYA 2IUCB 4UPHA 4CYRA 2D1GA 1E2SP 5IJSA 4GTXA 1HJKA 4LREA 3A52A 4MHXA 1ED8A 1KHKA 5L0KA 3T00A 3TX0A 3M8YA 3UO0A 5C66A 1ANIA 3E2DA 1ALIA 1AUKA 1HQAA 4ZG9A 1ALHA 3WBHA 4LR2A 5LQQA 1ALJA 4UORA 4ZG6A 5KXAA 1ALKA 4LQYA 5LRNA 3WAWA 1KHLA 3TWZA 3WAXA 5DLVA 3UN2A 2IUCA 1KH7A 3NKQA 5GRRA 4KJDA 3IDDA 3BDHA 3LXQA 4UPLA 3CMRA 1ANJA 4NWJA 3BDGB 3MK2A 1AJCA 3M8WA 1E1ZP 4FDJA 1E33P 4FDIA 2RH6A 1AJDA 4KAYA 4LRCA 3UN5A 1HDHA 3IGZB 5AJ9A 3WAVA 4ZGAA 5L0EA 4LR8A 4B56A 1SHNA 4QAXA 5IJQA 4YR1A 4LRDA 2GSUA 3NKPA 4UOPA 5DLWA 5INHA 4ZG7A 2GSOA 3DYCA 1FSUA 1N2LA 2W5WA 1EW8A 4LR7A 2ZKTA 2XRGA 4UPIA 4MIVA 2QZUA 2VQRA 4LRBA 1O99A 1EW2A 3SZYA 4LR9A 4UPKA 2X98A 1ELYA 4GTZA 1ELZA 1KHJA 3KD8A 1URBA 5EGHA 3BDGA 2GA3A 3B5QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NKM A;  2W8D A;  3ED4 A;  3NKR A;  1KH9 A;  3T01 A;  1E3C P;  3NVL A;  5DLT A;  3M7V A;  1K7H A;  5L0B A;  1KH4 A;  4KAV A;  4UOO A;  3UNY A;  4CYS A;  2W5S A;  3NKN A;  3OT9 A;  1ELX A;  2W5Q A;  5EGE A;  3WAY A;  5K4P A;  2IFY A;  4N7T A;  1KHN A;  2W5T A;  3MK1 A;  3Q3Q A;  4CXK A;  1AJA A;  5TJ3 A;  2ANH A;  1URA A;  3MK0 A;  4LRF A;  4NWX A;  5HRT A;  2W5V A;  1EJJ A;  3M8Z A;  1EW9 A;  1ZED A;  3DPC A;  4KJG A;  5GOV A;  3T02 A;  3TG0 A;  4MY4 A;  2G9Y A;  4CXU A;  3IGY B;  1KH5 A;  1Y6V A;  1ED9 A;  1P49 A;  4KM4 A;  4LRA A;  1SHQ A;  4CXS A;  2W5X A;  4GTW A;  1EI6 A;  3BDF A;  2W5R A;  1O98 A;  5LRM A;  3SZZ A;  4TN0 A;  2XR9 A;  2GLQ A;  2GSN A;  1N2K A;  5LIA A;  1ZEF A;  3UN3 A;  1AJB A;  1ZEB A;  1Y7A A;  1EQJ A;  2W8S A;  1B8J A;  3NKO A;  4GTY A;  2IUC B;  4UPH A;  4CYR A;  2D1G A;  1E2S P;  5IJS A;  4GTX A;  1HJK A;  4LRE A;  3A52 A;  4MHX A;  1ED8 A;  1KHK A;  5L0K A;  3T00 A;  3TX0 A;  3M8Y A;  3UO0 A;  5C66 A;  1ANI A;  3E2D A;  1ALI A;  1AUK A;  1HQA A;  4ZG9 A;  1ALH A;  3WBH A;  4LR2 A;  5LQQ A;  1ALJ A;  4UOR A;  4ZG6 A;  5KXA A;  1ALK A;  4LQY A;  5LRN A;  3WAW A;  1KHL A;  3TWZ A;  3WAX A;  5DLV A;  3UN2 A;  2IUC A;  1KH7 A;  3NKQ A;  5GRR A;  4KJD A;  3IDD A;  3BDH A;  3LXQ A;  4UPL A;  3CMR A;  1ANJ A;  4NWJ A;  3BDG B;  3MK2 A;  1AJC A;  3M8W A;  1E1Z P;  4FDJ A;  1E33 P;  4FDI A;  2RH6 A;  1AJD A;  4KAY A;  4LRC A;  3UN5 A;  1HDH A;  3IGZ B;  5AJ9 A;  3WAV A;  4ZGA A;  5L0E A;  4LR8 A;  4B56 A;  1SHN A;  4QAX A;  5IJQ A;  4YR1 A;  4LRD A;  2GSU A;  3NKP A;  4UOP A;  5DLW A;  5INH A;  4ZG7 A;  2GSO A;  3DYC A;  1FSU A;  1N2L A;  2W5W A;  1EW8 A;  4LR7 A;  2ZKT A;  2XRG A;  4UPI A;  4MIV A;  2QZU A;  2VQR A;  4LRB A;  1O99 A;  1EW2 A;  3SZY A;  4LR9 A;  4UPK A;  2X98 A;  1ELY A;  4GTZ A;  1ELZ A;  1KHJ A;  3KD8 A;  1URB A;  5EGH A;  3BDG A;  2GA3 A;  3B5Q A; 
#chains in the Genus database with same CATH topology
 3NKM A;  2W8D A;  3ED4 A;  3NKR A;  1KH9 A;  3T01 A;  1E3C P;  3NVL A;  5DLT A;  3M7V A;  1K7H A;  5L0B A;  1KH4 A;  4KAV A;  4UOO A;  3UNY A;  4CYS A;  2W5S A;  3NKN A;  3OT9 A;  1ELX A;  2W5Q A;  5EGE A;  3WAY A;  5K4P A;  2IFY A;  4N7T A;  1KHN A;  2W5T A;  3MK1 A;  3Q3Q A;  4CXK A;  1AJA A;  5TJ3 A;  2ANH A;  1URA A;  3MK0 A;  4LRF A;  4NWX A;  5HRT A;  2W5V A;  1EJJ A;  3M8Z A;  1EW9 A;  1ZED A;  3DPC A;  4KJG A;  5GOV A;  3T02 A;  3TG0 A;  4MY4 A;  2G9Y A;  4CXU A;  3IGY B;  1KH5 A;  1Y6V A;  1ED9 A;  1P49 A;  4KM4 A;  4LRA A;  1SHQ A;  4CXS A;  2W5X A;  4GTW A;  1EI6 A;  3BDF A;  2W5R A;  1O98 A;  5LRM A;  3SZZ A;  4TN0 A;  2XR9 A;  2GLQ A;  2GSN A;  1N2K A;  5LIA A;  1ZEF A;  3UN3 A;  1AJB A;  1ZEB A;  1Y7A A;  1EQJ A;  2W8S A;  1B8J A;  3NKO A;  4GTY A;  2IUC B;  4UPH A;  4CYR A;  2D1G A;  1E2S P;  5IJS A;  4GTX A;  1HJK A;  4LRE A;  3A52 A;  4MHX A;  1ED8 A;  1KHK A;  5L0K A;  3T00 A;  3TX0 A;  3M8Y A;  3UO0 A;  5C66 A;  1ANI A;  3E2D A;  1ALI A;  1AUK A;  1HQA A;  4ZG9 A;  1ALH A;  3WBH A;  4LR2 A;  5LQQ A;  1ALJ A;  4UOR A;  4ZG6 A;  5KXA A;  1ALK A;  4LQY A;  5LRN A;  3WAW A;  1KHL A;  3TWZ A;  3WAX A;  5DLV A;  3UN2 A;  2IUC A;  1KH7 A;  3NKQ A;  5GRR A;  4KJD A;  3IDD A;  3BDH A;  3LXQ A;  4UPL A;  3CMR A;  1ANJ A;  4NWJ A;  3BDG B;  3MK2 A;  1AJC A;  3M8W A;  1E1Z P;  4FDJ A;  1E33 P;  4FDI A;  2RH6 A;  1AJD A;  4KAY A;  4LRC A;  3UN5 A;  1HDH A;  3IGZ B;  5AJ9 A;  3WAV A;  4ZGA A;  5L0E A;  4LR8 A;  4B56 A;  1SHN A;  4QAX A;  5IJQ A;  4YR1 A;  4LRD A;  2GSU A;  3NKP A;  4UOP A;  5DLW A;  5INH A;  4ZG7 A;  2GSO A;  3DYC A;  1FSU A;  1N2L A;  2W5W A;  1EW8 A;  4LR7 A;  2ZKT A;  2XRG A;  4UPI A;  4MIV A;  2QZU A;  2VQR A;  4LRB A;  1O99 A;  1EW2 A;  3SZY A;  4LR9 A;  4UPK A;  2X98 A;  1ELY A;  4GTZ A;  1ELZ A;  1KHJ A;  3KD8 A;  1URB A;  5EGH A;  3BDG A;  2GA3 A;  3B5Q A; 
#chains in the Genus database with same CATH homology
 3NKM A;  2W8D A;  3ED4 A;  3NKR A;  1KH9 A;  3T01 A;  1E3C P;  3NVL A;  5DLT A;  3M7V A;  1K7H A;  5L0B A;  1KH4 A;  4KAV A;  4UOO A;  3UNY A;  4CYS A;  2W5S A;  3NKN A;  3OT9 A;  1ELX A;  2W5Q A;  5EGE A;  3WAY A;  5K4P A;  2IFY A;  4N7T A;  1KHN A;  2W5T A;  3MK1 A;  3Q3Q A;  4CXK A;  1AJA A;  5TJ3 A;  2ANH A;  1URA A;  3MK0 A;  4LRF A;  4NWX A;  5HRT A;  2W5V A;  1EJJ A;  3M8Z A;  1EW9 A;  1ZED A;  3DPC A;  4KJG A;  5GOV A;  3T02 A;  3TG0 A;  4MY4 A;  2G9Y A;  4CXU A;  3IGY B;  1KH5 A;  1Y6V A;  1ED9 A;  1P49 A;  4KM4 A;  4LRA A;  1SHQ A;  4CXS A;  2W5X A;  4GTW A;  1EI6 A;  3BDF A;  2W5R A;  1O98 A;  5LRM A;  3SZZ A;  4TN0 A;  2XR9 A;  2GLQ A;  2GSN A;  1N2K A;  5LIA A;  1ZEF A;  3UN3 A;  1AJB A;  1ZEB A;  1Y7A A;  1EQJ A;  2W8S A;  1B8J A;  3NKO A;  4GTY A;  2IUC B;  4UPH A;  4CYR A;  2D1G A;  1E2S P;  5IJS A;  4GTX A;  1HJK A;  4LRE A;  3A52 A;  4MHX A;  1ED8 A;  1KHK A;  5L0K A;  3T00 A;  3TX0 A;  3M8Y A;  3UO0 A;  5C66 A;  1ANI A;  3E2D A;  1ALI A;  1AUK A;  1HQA A;  4ZG9 A;  1ALH A;  3WBH A;  4LR2 A;  5LQQ A;  1ALJ A;  4UOR A;  4ZG6 A;  5KXA A;  1ALK A;  4LQY A;  5LRN A;  3WAW A;  1KHL A;  3TWZ A;  3WAX A;  5DLV A;  3UN2 A;  2IUC A;  1KH7 A;  3NKQ A;  5GRR A;  4KJD A;  3IDD A;  3BDH A;  3LXQ A;  4UPL A;  3CMR A;  1ANJ A;  4NWJ A;  3BDG B;  3MK2 A;  1AJC A;  3M8W A;  1E1Z P;  4FDJ A;  1E33 P;  4FDI A;  2RH6 A;  1AJD A;  4KAY A;  4LRC A;  3UN5 A;  1HDH A;  3IGZ B;  5AJ9 A;  3WAV A;  4ZGA A;  5L0E A;  4LR8 A;  4B56 A;  1SHN A;  4QAX A;  5IJQ A;  4YR1 A;  4LRD A;  2GSU A;  3NKP A;  4UOP A;  5DLW A;  5INH A;  4ZG7 A;  2GSO A;  3DYC A;  1FSU A;  1N2L A;  2W5W A;  1EW8 A;  4LR7 A;  2ZKT A;  2XRG A;  4UPI A;  4MIV A;  2QZU A;  2VQR A;  4LRB A;  1O99 A;  1EW2 A;  3SZY A;  4LR9 A;  4UPK A;  2X98 A;  1ELY A;  4GTZ A;  1ELZ A;  1KHJ A;  3KD8 A;  1URB A;  5EGH A;  3BDG A;  2GA3 A;  3B5Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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