4TN0A

Crystal structure of the c-terminal periplasmic domain of phosphoethanolamine transferase eptc from campylobacter jejuni
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
Knots found
sequence length
311
structure length
307
Chain Sequence
MFKTIANDAYRHTKKLLVLVVGETARAANYSLGGYTKNDTNFYTKKDNVVFFDNFSSCGTAAVSLPCMFSISKRENYSSSEFQENAMDVLYKTGVDAAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLLIPFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDSEALINTYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENGIYLHGMPYAIAPSYQTHIPAIFWSNDEKLMNLAKEHKGLKLSQDNLFSTLLGYFNVKTSVYEPEYDLLNPKLKANP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UPF0141 protein yjdB
publication title Crystallographic study of the phosphoethanolamine transferase EptC required for polymyxin resistance and motility in Campylobacter jejuni.
pubmed doi rcsb
source organism Campylobacter jejuni subsp. jejuni hb93-13
molecule tags Transferase
total genus 121
structure length 307
sequence length 311
chains with identical sequence B, C
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2014-06-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4tn0A00
3BDFA 1URAA 1SHQA 1KH9A 3M8YA 2W5RA 4KAYA 1ALHA 3WAWA 4MHXA 4LRDA 1P49A 3BDGA 3TX0A 5L0BA 1Y7AA 4CYRA 3TG0A 5EGHA 1KHJA 2GA3A 2W5SA 3NKRA 3WAXA 1AJDA 3NKOA 5IJSA 4LQYA 2RH6A 5LRNA 4KJGA 2ZKTA 5KXAA 2GSOA 1AUKA 2GSUA 5EGEA 3UN3A 1ANIA 1ALKA 4GTXA 4LREA 5DLVA 3NKNA 4GTZA 1AJAA 5K4PA 2IUCB 1ELZA 4GTWA 5LRMA 2D1GA 1FSUA 1ED8A 3MK1A 1ALIA 2W8SA 1EW2A 4QAXA 1EW8A 4LR8A 4TN0A 4LRAA 1URBA 4MY4A 3IDDA 1ED9A 5LQQA 4CYSA 3MK2A 4UPLA 4CXUA 5DLTA 4LR9A 5C66A 5HRTA 3CMRA 1EQJA 4UPIA 3UNYA 3DPCA 1EI6A 1EW9A 2VQRA 4NWXA 4B56A 1O98A 1O99A 4LR2A 3BDGB 4ZG9A 1AJCA 1HDHA 4N7TA 3NVLA 3WAYA 1AJBA 1ANJA 2X98A 1HJKA 2XRGA 4ZGAA 1ALJA 2GLQA 3E2DA 5LIAA 2GSNA 3M8ZA 3M7VA 3T00A 5TJ3A 1ZEFA 3M8WA 4KAVA 3WBHA 1KHNA 2G9YA 1KHLA 3MK0A 5L0KA 4FDIA 5GOVA 2QZUA 2W5TA 5IJQA 5INHA 1KH7A 4CXKA 1E1ZP 4FDJA 2W5VA 4YR1A 5DLWA 3UN5A 1B8JA 4LRFA 3T01A 2IFYA 3B5QA 2W5XA 3NKQA 1ZEBA 3A52A 3IGYB 1N2LA 3UO0A 1E3CP 3T02A 5GRRA 5L0EA 3WAVA 2ANHA 3KD8A 3Q3QA 1ZEDA 4MIVA 4UOPA 4UPKA 4GTYA 3IGZB 3SZZA 1ELYA 2XR9A 5AJ9A 3ED4A 3DYCA 4UORA 1E33P 3NKPA 1K7HA 1HQAA 2W5QA 4CXSA 3TWZA 4ZG7A 1KH4A 3SZYA 2W8DA 1N2KA 3OT9A 4KJDA 2IUCA 1Y6VA 1E2SP 1KH5A 3LXQA 4KM4A 1ELXA 4NWJA 4ZG6A 4UPHA 1SHNA 3NKMA 4LR7A 1KHKA 4LRCA 1EJJA 2W5WA 4LRBA 3BDHA 4UOOA 3UN2A
chains in the Genus database with same CATH superfamily
3BDFA 1URAA 1SHQA 1KH9A 3M8YA 2W5RA 4KAYA 1ALHA 3WAWA 4MHXA 4LRDA 1P49A 3BDGA 3TX0A 5L0BA 1Y7AA 4CYRA 3TG0A 5EGHA 1KHJA 2GA3A 2W5SA 3NKRA 3WAXA 1AJDA 3NKOA 5IJSA 4LQYA 2RH6A 5LRNA 4KJGA 2ZKTA 5KXAA 2GSOA 1AUKA 2GSUA 5EGEA 3UN3A 1ANIA 1ALKA 4GTXA 4LREA 5DLVA 3NKNA 4GTZA 1AJAA 5K4PA 2IUCB 1ELZA 4GTWA 5LRMA 2D1GA 1FSUA 1ED8A 3MK1A 1ALIA 2W8SA 1EW2A 4QAXA 1EW8A 4LR8A 4TN0A 4LRAA 1URBA 4MY4A 3IDDA 1ED9A 5LQQA 4CYSA 3MK2A 4UPLA 4CXUA 5DLTA 4LR9A 5C66A 5HRTA 3CMRA 1EQJA 4UPIA 3UNYA 3DPCA 1EI6A 1EW9A 2VQRA 4NWXA 4B56A 1O98A 1O99A 4LR2A 3BDGB 4ZG9A 1AJCA 1HDHA 4N7TA 3NVLA 3WAYA 1AJBA 1ANJA 2X98A 1HJKA 2XRGA 4ZGAA 1ALJA 2GLQA 3E2DA 5LIAA 2GSNA 3M8ZA 3M7VA 3T00A 5TJ3A 1ZEFA 3M8WA 4KAVA 3WBHA 1KHNA 2G9YA 1KHLA 3MK0A 5L0KA 4FDIA 5GOVA 2QZUA 2W5TA 5IJQA 5INHA 1KH7A 4CXKA 1E1ZP 4FDJA 2W5VA 4YR1A 5DLWA 3UN5A 1B8JA 4LRFA 3T01A 2IFYA 3B5QA 2W5XA 3NKQA 1ZEBA 3A52A 3IGYB 1N2LA 3UO0A 1E3CP 3T02A 5GRRA 5L0EA 3WAVA 2ANHA 3KD8A 3Q3QA 1ZEDA 4MIVA 4UOPA 4UPKA 4GTYA 3IGZB 3SZZA 1ELYA 2XR9A 5AJ9A 3ED4A 3DYCA 4UORA 1E33P 3NKPA 1K7HA 1HQAA 2W5QA 4CXSA 3TWZA 4ZG7A 1KH4A 3SZYA 2W8DA 1N2KA 3OT9A 4KJDA 2IUCA 1Y6VA 1E2SP 1KH5A 3LXQA 4KM4A 1ELXA 4NWJA 4ZG6A 4UPHA 1SHNA 3NKMA 4LR7A 1KHKA 4LRCA 1EJJA 2W5WA 4LRBA 3BDHA 4UOOA 3UN2A
chains in the Genus database with same CATH topology
3BDFA 1URAA 1SHQA 1KH9A 3M8YA 2W5RA 4KAYA 1ALHA 3WAWA 4MHXA 4LRDA 1P49A 3BDGA 3TX0A 5L0BA 1Y7AA 4CYRA 3TG0A 5EGHA 1KHJA 2GA3A 2W5SA 3NKRA 3WAXA 1AJDA 3NKOA 5IJSA 4LQYA 2RH6A 5LRNA 4KJGA 2ZKTA 5KXAA 2GSOA 1AUKA 2GSUA 5EGEA 3UN3A 1ANIA 1ALKA 4GTXA 4LREA 5DLVA 3NKNA 4GTZA 1AJAA 5K4PA 2IUCB 1ELZA 4GTWA 5LRMA 2D1GA 1FSUA 1ED8A 3MK1A 1ALIA 2W8SA 1EW2A 4QAXA 1EW8A 4LR8A 4TN0A 4LRAA 1URBA 4MY4A 3IDDA 1ED9A 5LQQA 4CYSA 3MK2A 4UPLA 4CXUA 5DLTA 4LR9A 5C66A 5HRTA 3CMRA 1EQJA 4UPIA 3UNYA 3DPCA 1EI6A 1EW9A 2VQRA 4NWXA 4B56A 1O98A 1O99A 4LR2A 3BDGB 4ZG9A 1AJCA 1HDHA 4N7TA 3NVLA 3WAYA 1AJBA 1ANJA 2X98A 1HJKA 2XRGA 4ZGAA 1ALJA 2GLQA 3E2DA 5LIAA 2GSNA 3M8ZA 3M7VA 3T00A 5TJ3A 1ZEFA 3M8WA 4KAVA 3WBHA 1KHNA 2G9YA 1KHLA 3MK0A 5L0KA 4FDIA 5GOVA 2QZUA 2W5TA 5IJQA 5INHA 1KH7A 4CXKA 1E1ZP 4FDJA 2W5VA 4YR1A 5DLWA 3UN5A 1B8JA 4LRFA 3T01A 2IFYA 3B5QA 2W5XA 3NKQA 1ZEBA 3A52A 3IGYB 1N2LA 3UO0A 1E3CP 3T02A 5GRRA 5L0EA 3WAVA 2ANHA 3KD8A 3Q3QA 1ZEDA 4MIVA 4UOPA 4UPKA 4GTYA 3IGZB 3SZZA 1ELYA 2XR9A 5AJ9A 3ED4A 3DYCA 4UORA 1E33P 3NKPA 1K7HA 1HQAA 2W5QA 4CXSA 3TWZA 4ZG7A 1KH4A 3SZYA 2W8DA 1N2KA 3OT9A 4KJDA 2IUCA 1Y6VA 1E2SP 1KH5A 3LXQA 4KM4A 1ELXA 4NWJA 4ZG6A 4UPHA 1SHNA 3NKMA 4LR7A 1KHKA 4LRCA 1EJJA 2W5WA 4LRBA 3BDHA 4UOOA 3UN2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BDF A;  1URA A;  1SHQ A;  1KH9 A;  3M8Y A;  2W5R A;  4KAY A;  1ALH A;  3WAW A;  4MHX A;  4LRD A;  1P49 A;  3BDG A;  3TX0 A;  5L0B A;  1Y7A A;  4CYR A;  3TG0 A;  5EGH A;  1KHJ A;  2GA3 A;  2W5S A;  3NKR A;  3WAX A;  1AJD A;  3NKO A;  5IJS A;  4LQY A;  2RH6 A;  5LRN A;  4KJG A;  2ZKT A;  5KXA A;  2GSO A;  1AUK A;  2GSU A;  5EGE A;  3UN3 A;  1ANI A;  1ALK A;  4GTX A;  4LRE A;  5DLV A;  3NKN A;  4GTZ A;  1AJA A;  5K4P A;  2IUC B;  1ELZ A;  4GTW A;  5LRM A;  2D1G A;  1FSU A;  1ED8 A;  3MK1 A;  1ALI A;  2W8S A;  1EW2 A;  4QAX A;  1EW8 A;  4LR8 A;  4TN0 A;  4LRA A;  1URB A;  4MY4 A;  3IDD A;  1ED9 A;  5LQQ A;  4CYS A;  3MK2 A;  4UPL A;  4CXU A;  5DLT A;  4LR9 A;  5C66 A;  5HRT A;  3CMR A;  1EQJ A;  4UPI A;  3UNY A;  3DPC A;  1EI6 A;  1EW9 A;  2VQR A;  4NWX A;  4B56 A;  1O98 A;  1O99 A;  4LR2 A;  3BDG B;  4ZG9 A;  1AJC A;  1HDH A;  4N7T A;  3NVL A;  3WAY A;  1AJB A;  1ANJ A;  2X98 A;  1HJK A;  2XRG A;  4ZGA A;  1ALJ A;  2GLQ A;  3E2D A;  5LIA A;  2GSN A;  3M8Z A;  3M7V A;  3T00 A;  5TJ3 A;  1ZEF A;  3M8W A;  4KAV A;  3WBH A;  1KHN A;  2G9Y A;  1KHL A;  3MK0 A;  5L0K A;  4FDI A;  5GOV A;  2QZU A;  2W5T A;  5IJQ A;  5INH A;  1KH7 A;  4CXK A;  1E1Z P;  4FDJ A;  2W5V A;  4YR1 A;  5DLW A;  3UN5 A;  1B8J A;  4LRF A;  3T01 A;  2IFY A;  3B5Q A;  2W5X A;  3NKQ A;  1ZEB A;  3A52 A;  3IGY B;  1N2L A;  3UO0 A;  1E3C P;  3T02 A;  5GRR A;  5L0E A;  3WAV A;  2ANH A;  3KD8 A;  3Q3Q A;  1ZED A;  4MIV A;  4UOP A;  4UPK A;  4GTY A;  3IGZ B;  3SZZ A;  1ELY A;  2XR9 A;  5AJ9 A;  3ED4 A;  3DYC A;  4UOR A;  1E33 P;  3NKP A;  1K7H A;  1HQA A;  2W5Q A;  4CXS A;  3TWZ A;  4ZG7 A;  1KH4 A;  3SZY A;  2W8D A;  1N2K A;  3OT9 A;  4KJD A;  2IUC A;  1Y6V A;  1E2S P;  1KH5 A;  3LXQ A;  4KM4 A;  1ELX A;  4NWJ A;  4ZG6 A;  4UPH A;  1SHN A;  3NKM A;  4LR7 A;  1KHK A;  4LRC A;  1EJJ A;  2W5W A;  4LRB A;  3BDH A;  4UOO A;  3UN2 A; 
#chains in the Genus database with same CATH topology
 3BDF A;  1URA A;  1SHQ A;  1KH9 A;  3M8Y A;  2W5R A;  4KAY A;  1ALH A;  3WAW A;  4MHX A;  4LRD A;  1P49 A;  3BDG A;  3TX0 A;  5L0B A;  1Y7A A;  4CYR A;  3TG0 A;  5EGH A;  1KHJ A;  2GA3 A;  2W5S A;  3NKR A;  3WAX A;  1AJD A;  3NKO A;  5IJS A;  4LQY A;  2RH6 A;  5LRN A;  4KJG A;  2ZKT A;  5KXA A;  2GSO A;  1AUK A;  2GSU A;  5EGE A;  3UN3 A;  1ANI A;  1ALK A;  4GTX A;  4LRE A;  5DLV A;  3NKN A;  4GTZ A;  1AJA A;  5K4P A;  2IUC B;  1ELZ A;  4GTW A;  5LRM A;  2D1G A;  1FSU A;  1ED8 A;  3MK1 A;  1ALI A;  2W8S A;  1EW2 A;  4QAX A;  1EW8 A;  4LR8 A;  4TN0 A;  4LRA A;  1URB A;  4MY4 A;  3IDD A;  1ED9 A;  5LQQ A;  4CYS A;  3MK2 A;  4UPL A;  4CXU A;  5DLT A;  4LR9 A;  5C66 A;  5HRT A;  3CMR A;  1EQJ A;  4UPI A;  3UNY A;  3DPC A;  1EI6 A;  1EW9 A;  2VQR A;  4NWX A;  4B56 A;  1O98 A;  1O99 A;  4LR2 A;  3BDG B;  4ZG9 A;  1AJC A;  1HDH A;  4N7T A;  3NVL A;  3WAY A;  1AJB A;  1ANJ A;  2X98 A;  1HJK A;  2XRG A;  4ZGA A;  1ALJ A;  2GLQ A;  3E2D A;  5LIA A;  2GSN A;  3M8Z A;  3M7V A;  3T00 A;  5TJ3 A;  1ZEF A;  3M8W A;  4KAV A;  3WBH A;  1KHN A;  2G9Y A;  1KHL A;  3MK0 A;  5L0K A;  4FDI A;  5GOV A;  2QZU A;  2W5T A;  5IJQ A;  5INH A;  1KH7 A;  4CXK A;  1E1Z P;  4FDJ A;  2W5V A;  4YR1 A;  5DLW A;  3UN5 A;  1B8J A;  4LRF A;  3T01 A;  2IFY A;  3B5Q A;  2W5X A;  3NKQ A;  1ZEB A;  3A52 A;  3IGY B;  1N2L A;  3UO0 A;  1E3C P;  3T02 A;  5GRR A;  5L0E A;  3WAV A;  2ANH A;  3KD8 A;  3Q3Q A;  1ZED A;  4MIV A;  4UOP A;  4UPK A;  4GTY A;  3IGZ B;  3SZZ A;  1ELY A;  2XR9 A;  5AJ9 A;  3ED4 A;  3DYC A;  4UOR A;  1E33 P;  3NKP A;  1K7H A;  1HQA A;  2W5Q A;  4CXS A;  3TWZ A;  4ZG7 A;  1KH4 A;  3SZY A;  2W8D A;  1N2K A;  3OT9 A;  4KJD A;  2IUC A;  1Y6V A;  1E2S P;  1KH5 A;  3LXQ A;  4KM4 A;  1ELX A;  4NWJ A;  4ZG6 A;  4UPH A;  1SHN A;  3NKM A;  4LR7 A;  1KHK A;  4LRC A;  1EJJ A;  2W5W A;  4LRB A;  3BDH A;  4UOO A;  3UN2 A; 
#chains in the Genus database with same CATH homology
 3BDF A;  1URA A;  1SHQ A;  1KH9 A;  3M8Y A;  2W5R A;  4KAY A;  1ALH A;  3WAW A;  4MHX A;  4LRD A;  1P49 A;  3BDG A;  3TX0 A;  5L0B A;  1Y7A A;  4CYR A;  3TG0 A;  5EGH A;  1KHJ A;  2GA3 A;  2W5S A;  3NKR A;  3WAX A;  1AJD A;  3NKO A;  5IJS A;  4LQY A;  2RH6 A;  5LRN A;  4KJG A;  2ZKT A;  5KXA A;  2GSO A;  1AUK A;  2GSU A;  5EGE A;  3UN3 A;  1ANI A;  1ALK A;  4GTX A;  4LRE A;  5DLV A;  3NKN A;  4GTZ A;  1AJA A;  5K4P A;  2IUC B;  1ELZ A;  4GTW A;  5LRM A;  2D1G A;  1FSU A;  1ED8 A;  3MK1 A;  1ALI A;  2W8S A;  1EW2 A;  4QAX A;  1EW8 A;  4LR8 A;  4TN0 A;  4LRA A;  1URB A;  4MY4 A;  3IDD A;  1ED9 A;  5LQQ A;  4CYS A;  3MK2 A;  4UPL A;  4CXU A;  5DLT A;  4LR9 A;  5C66 A;  5HRT A;  3CMR A;  1EQJ A;  4UPI A;  3UNY A;  3DPC A;  1EI6 A;  1EW9 A;  2VQR A;  4NWX A;  4B56 A;  1O98 A;  1O99 A;  4LR2 A;  3BDG B;  4ZG9 A;  1AJC A;  1HDH A;  4N7T A;  3NVL A;  3WAY A;  1AJB A;  1ANJ A;  2X98 A;  1HJK A;  2XRG A;  4ZGA A;  1ALJ A;  2GLQ A;  3E2D A;  5LIA A;  2GSN A;  3M8Z A;  3M7V A;  3T00 A;  5TJ3 A;  1ZEF A;  3M8W A;  4KAV A;  3WBH A;  1KHN A;  2G9Y A;  1KHL A;  3MK0 A;  5L0K A;  4FDI A;  5GOV A;  2QZU A;  2W5T A;  5IJQ A;  5INH A;  1KH7 A;  4CXK A;  1E1Z P;  4FDJ A;  2W5V A;  4YR1 A;  5DLW A;  3UN5 A;  1B8J A;  4LRF A;  3T01 A;  2IFY A;  3B5Q A;  2W5X A;  3NKQ A;  1ZEB A;  3A52 A;  3IGY B;  1N2L A;  3UO0 A;  1E3C P;  3T02 A;  5GRR A;  5L0E A;  3WAV A;  2ANH A;  3KD8 A;  3Q3Q A;  1ZED A;  4MIV A;  4UOP A;  4UPK A;  4GTY A;  3IGZ B;  3SZZ A;  1ELY A;  2XR9 A;  5AJ9 A;  3ED4 A;  3DYC A;  4UOR A;  1E33 P;  3NKP A;  1K7H A;  1HQA A;  2W5Q A;  4CXS A;  3TWZ A;  4ZG7 A;  1KH4 A;  3SZY A;  2W8D A;  1N2K A;  3OT9 A;  4KJD A;  2IUC A;  1Y6V A;  1E2S P;  1KH5 A;  3LXQ A;  4KM4 A;  1ELX A;  4NWJ A;  4ZG6 A;  4UPH A;  1SHN A;  3NKM A;  4LR7 A;  1KHK A;  4LRC A;  1EJJ A;  2W5W A;  4LRB A;  3BDH A;  4UOO A;  3UN2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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