3BDGB

Crystal structure of wild-type/t155v mixed dimer of e. coli alkaline phosphatase
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
Knots found
sequence length
446
structure length
433
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Escherichia coli
publication title The Active-Site Trimetallic Cluster of Alkaline Phosphatase is Lost Upon Isosteric Mutation at the Mg2+-Coordinating Residue Threonine-155
rcsb
molecule keywords Alkaline phosphatase
total genus 159
structure length 433
sequence length 446
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2007-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3bdgB00
4UORA 1ANIA 3SZYA 1ALHA 3T01A 3IGYB 5INHA 3WAYA 3LXQA 3UN3A 1AJCA 2ZKTA 3M8YA 4GTZA 3E2DA 5DLVA 1ZEFA 3WAXA 2W8SA 1AJAA 1AUKA 3IGZB 4ZG7A 3KD8A 1ZEBA 5L0KA 1E1ZP 1P49A 3T02A 4LRFA 5LIAA 5LQQA 4KM4A 4LRBA 4GTXA 4UPIA 1EJJA 1ELZA 2GSUA 5GOVA 1N2KA 5EGHA 1HJKA 3M8WA 3B5QA 1Y7AA 3UN5A 2W5RA 3WAVA 1KHNA 1KH9A 5IJSA 4KAYA 4MHXA 3MK1A 1ALJA 1ED9A 2X98A 5K4PA 3MK2A 5EGEA 3NKQA 3WBHA 4CYSA 5GRRA 1EW2A 3BDGB 1ZEDA 2VQRA 1HQAA 2D1GA 1SHNA 4LRDA 2W5WA 5DLWA 5C66A 5LRNA 3NKOA 3M7VA 3OT9A 4CXKA 1O98A 2W5VA 5DLTA 1AJDA 4CXSA 4KJDA 3NKPA 4UPLA 5L0BA 1KHJA 2G9YA 1FSUA 4B56A 1O99A 1SHQA 2ANHA 1KH5A 4N7TA 2W5XA 3UO0A 1N2LA 3NVLA 1URBA 5IJQA 4UPKA 4KAVA 1E3CP 4GTYA 4LR7A 5TJ3A 1AJBA 4FDJA 5AJ9A 3TWZA 5KXAA 3CMRA 4MY4A 2IUCA 2W8DA 1B8JA 1E33P 4CXUA 3SZZA 3BDFA 1ED8A 1EI6A 2W5TA 1ELYA 3Q3QA 2GA3A 4LRCA 3DPCA 3ED4A 3TG0A 1EQJA 5LRMA 2W5SA 4UOOA 4MIVA 4LRAA 4CYRA 1EW8A 1ANJA 3BDHA 2W5QA 5HRTA 4ZG9A 3MK0A 4LREA 4KJGA 4FDIA 4LR8A 2GSOA 1KHLA 4LQYA 3M8ZA 3NKMA 2IFYA 3DYCA 3IDDA 2XR9A 1E2SP 3UNYA 1URAA 4UOPA 3TX0A 2GSNA 4LR2A 2XRGA 4UPHA 3UN2A 3NKRA 1KH4A 1Y6VA 2RH6A 4ZGAA 1HDHA 2GLQA 1ALIA 1K7HA 4QAXA 3BDGA 1KHKA 4LR9A 4NWJA 4TN0A 4GTWA 1ALKA 2QZUA 3T00A 5L0EA 1ELXA 3NKNA 1EW9A 4YR1A 3A52A 2IUCB 4NWXA 4ZG6A 3WAWA 1KH7A
chains in the Genus database with same CATH superfamily
4UORA 1ANIA 3SZYA 1ALHA 3T01A 3IGYB 5INHA 3WAYA 3LXQA 3UN3A 1AJCA 2ZKTA 3M8YA 4GTZA 3E2DA 5DLVA 1ZEFA 3WAXA 2W8SA 1AJAA 1AUKA 3IGZB 4ZG7A 3KD8A 1ZEBA 5L0KA 1E1ZP 1P49A 3T02A 4LRFA 5LIAA 5LQQA 4KM4A 4LRBA 4GTXA 4UPIA 1EJJA 1ELZA 2GSUA 5GOVA 1N2KA 5EGHA 1HJKA 3M8WA 3B5QA 1Y7AA 3UN5A 2W5RA 3WAVA 1KHNA 1KH9A 5IJSA 4KAYA 4MHXA 3MK1A 1ALJA 1ED9A 2X98A 5K4PA 3MK2A 5EGEA 3NKQA 3WBHA 4CYSA 5GRRA 1EW2A 3BDGB 1ZEDA 2VQRA 1HQAA 2D1GA 1SHNA 4LRDA 2W5WA 5DLWA 5C66A 5LRNA 3NKOA 3M7VA 3OT9A 4CXKA 1O98A 2W5VA 5DLTA 1AJDA 4CXSA 4KJDA 3NKPA 4UPLA 5L0BA 1KHJA 2G9YA 1FSUA 4B56A 1O99A 1SHQA 2ANHA 1KH5A 4N7TA 2W5XA 3UO0A 1N2LA 3NVLA 1URBA 5IJQA 4UPKA 4KAVA 1E3CP 4GTYA 4LR7A 5TJ3A 1AJBA 4FDJA 5AJ9A 3TWZA 5KXAA 3CMRA 4MY4A 2IUCA 2W8DA 1B8JA 1E33P 4CXUA 3SZZA 3BDFA 1ED8A 1EI6A 2W5TA 1ELYA 3Q3QA 2GA3A 4LRCA 3DPCA 3ED4A 3TG0A 1EQJA 5LRMA 2W5SA 4UOOA 4MIVA 4LRAA 4CYRA 1EW8A 1ANJA 3BDHA 2W5QA 5HRTA 4ZG9A 3MK0A 4LREA 4KJGA 4FDIA 4LR8A 2GSOA 1KHLA 4LQYA 3M8ZA 3NKMA 2IFYA 3DYCA 3IDDA 2XR9A 1E2SP 3UNYA 1URAA 4UOPA 3TX0A 2GSNA 4LR2A 2XRGA 4UPHA 3UN2A 3NKRA 1KH4A 1Y6VA 2RH6A 4ZGAA 1HDHA 2GLQA 1ALIA 1K7HA 4QAXA 3BDGA 1KHKA 4LR9A 4NWJA 4TN0A 4GTWA 1ALKA 2QZUA 3T00A 5L0EA 1ELXA 3NKNA 1EW9A 4YR1A 3A52A 2IUCB 4NWXA 4ZG6A 3WAWA 1KH7A
chains in the Genus database with same CATH topology
4UORA 1ANIA 3SZYA 1ALHA 3T01A 3IGYB 5INHA 3WAYA 3LXQA 3UN3A 1AJCA 2ZKTA 3M8YA 4GTZA 3E2DA 5DLVA 1ZEFA 3WAXA 2W8SA 1AJAA 1AUKA 3IGZB 4ZG7A 3KD8A 1ZEBA 5L0KA 1E1ZP 1P49A 3T02A 4LRFA 5LIAA 5LQQA 4KM4A 4LRBA 4GTXA 4UPIA 1EJJA 1ELZA 2GSUA 5GOVA 1N2KA 5EGHA 1HJKA 3M8WA 3B5QA 1Y7AA 3UN5A 2W5RA 3WAVA 1KHNA 1KH9A 5IJSA 4KAYA 4MHXA 3MK1A 1ALJA 1ED9A 2X98A 5K4PA 3MK2A 5EGEA 3NKQA 3WBHA 4CYSA 5GRRA 1EW2A 3BDGB 1ZEDA 2VQRA 1HQAA 2D1GA 1SHNA 4LRDA 2W5WA 5DLWA 5C66A 5LRNA 3NKOA 3M7VA 3OT9A 4CXKA 1O98A 2W5VA 5DLTA 1AJDA 4CXSA 4KJDA 3NKPA 4UPLA 5L0BA 1KHJA 2G9YA 1FSUA 4B56A 1O99A 1SHQA 2ANHA 1KH5A 4N7TA 2W5XA 3UO0A 1N2LA 3NVLA 1URBA 5IJQA 4UPKA 4KAVA 1E3CP 4GTYA 4LR7A 5TJ3A 1AJBA 4FDJA 5AJ9A 3TWZA 5KXAA 3CMRA 4MY4A 2IUCA 2W8DA 1B8JA 1E33P 4CXUA 3SZZA 3BDFA 1ED8A 1EI6A 2W5TA 1ELYA 3Q3QA 2GA3A 4LRCA 3DPCA 3ED4A 3TG0A 1EQJA 5LRMA 2W5SA 4UOOA 4MIVA 4LRAA 4CYRA 1EW8A 1ANJA 3BDHA 2W5QA 5HRTA 4ZG9A 3MK0A 4LREA 4KJGA 4FDIA 4LR8A 2GSOA 1KHLA 4LQYA 3M8ZA 3NKMA 2IFYA 3DYCA 3IDDA 2XR9A 1E2SP 3UNYA 1URAA 4UOPA 3TX0A 2GSNA 4LR2A 2XRGA 4UPHA 3UN2A 3NKRA 1KH4A 1Y6VA 2RH6A 4ZGAA 1HDHA 2GLQA 1ALIA 1K7HA 4QAXA 3BDGA 1KHKA 4LR9A 4NWJA 4TN0A 4GTWA 1ALKA 2QZUA 3T00A 5L0EA 1ELXA 3NKNA 1EW9A 4YR1A 3A52A 2IUCB 4NWXA 4ZG6A 3WAWA 1KH7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UOR A;  1ANI A;  3SZY A;  1ALH A;  3T01 A;  3IGY B;  5INH A;  3WAY A;  3LXQ A;  3UN3 A;  1AJC A;  2ZKT A;  3M8Y A;  4GTZ A;  3E2D A;  5DLV A;  1ZEF A;  3WAX A;  2W8S A;  1AJA A;  1AUK A;  3IGZ B;  4ZG7 A;  3KD8 A;  1ZEB A;  5L0K A;  1E1Z P;  1P49 A;  3T02 A;  4LRF A;  5LIA A;  5LQQ A;  4KM4 A;  4LRB A;  4GTX A;  4UPI A;  1EJJ A;  1ELZ A;  2GSU A;  5GOV A;  1N2K A;  5EGH A;  1HJK A;  3M8W A;  3B5Q A;  1Y7A A;  3UN5 A;  2W5R A;  3WAV A;  1KHN A;  1KH9 A;  5IJS A;  4KAY A;  4MHX A;  3MK1 A;  1ALJ A;  1ED9 A;  2X98 A;  5K4P A;  3MK2 A;  5EGE A;  3NKQ A;  3WBH A;  4CYS A;  5GRR A;  1EW2 A;  3BDG B;  1ZED A;  2VQR A;  1HQA A;  2D1G A;  1SHN A;  4LRD A;  2W5W A;  5DLW A;  5C66 A;  5LRN A;  3NKO A;  3M7V A;  3OT9 A;  4CXK A;  1O98 A;  2W5V A;  5DLT A;  1AJD A;  4CXS A;  4KJD A;  3NKP A;  4UPL A;  5L0B A;  1KHJ A;  2G9Y A;  1FSU A;  4B56 A;  1O99 A;  1SHQ A;  2ANH A;  1KH5 A;  4N7T A;  2W5X A;  3UO0 A;  1N2L A;  3NVL A;  1URB A;  5IJQ A;  4UPK A;  4KAV A;  1E3C P;  4GTY A;  4LR7 A;  5TJ3 A;  1AJB A;  4FDJ A;  5AJ9 A;  3TWZ A;  5KXA A;  3CMR A;  4MY4 A;  2IUC A;  2W8D A;  1B8J A;  1E33 P;  4CXU A;  3SZZ A;  3BDF A;  1ED8 A;  1EI6 A;  2W5T A;  1ELY A;  3Q3Q A;  2GA3 A;  4LRC A;  3DPC A;  3ED4 A;  3TG0 A;  1EQJ A;  5LRM A;  2W5S A;  4UOO A;  4MIV A;  4LRA A;  4CYR A;  1EW8 A;  1ANJ A;  3BDH A;  2W5Q A;  5HRT A;  4ZG9 A;  3MK0 A;  4LRE A;  4KJG A;  4FDI A;  4LR8 A;  2GSO A;  1KHL A;  4LQY A;  3M8Z A;  3NKM A;  2IFY A;  3DYC A;  3IDD A;  2XR9 A;  1E2S P;  3UNY A;  1URA A;  4UOP A;  3TX0 A;  2GSN A;  4LR2 A;  2XRG A;  4UPH A;  3UN2 A;  3NKR A;  1KH4 A;  1Y6V A;  2RH6 A;  4ZGA A;  1HDH A;  2GLQ A;  1ALI A;  1K7H A;  4QAX A;  3BDG A;  1KHK A;  4LR9 A;  4NWJ A;  4TN0 A;  4GTW A;  1ALK A;  2QZU A;  3T00 A;  5L0E A;  1ELX A;  3NKN A;  1EW9 A;  4YR1 A;  3A52 A;  2IUC B;  4NWX A;  4ZG6 A;  3WAW A;  1KH7 A; 
#chains in the Genus database with same CATH topology
 4UOR A;  1ANI A;  3SZY A;  1ALH A;  3T01 A;  3IGY B;  5INH A;  3WAY A;  3LXQ A;  3UN3 A;  1AJC A;  2ZKT A;  3M8Y A;  4GTZ A;  3E2D A;  5DLV A;  1ZEF A;  3WAX A;  2W8S A;  1AJA A;  1AUK A;  3IGZ B;  4ZG7 A;  3KD8 A;  1ZEB A;  5L0K A;  1E1Z P;  1P49 A;  3T02 A;  4LRF A;  5LIA A;  5LQQ A;  4KM4 A;  4LRB A;  4GTX A;  4UPI A;  1EJJ A;  1ELZ A;  2GSU A;  5GOV A;  1N2K A;  5EGH A;  1HJK A;  3M8W A;  3B5Q A;  1Y7A A;  3UN5 A;  2W5R A;  3WAV A;  1KHN A;  1KH9 A;  5IJS A;  4KAY A;  4MHX A;  3MK1 A;  1ALJ A;  1ED9 A;  2X98 A;  5K4P A;  3MK2 A;  5EGE A;  3NKQ A;  3WBH A;  4CYS A;  5GRR A;  1EW2 A;  3BDG B;  1ZED A;  2VQR A;  1HQA A;  2D1G A;  1SHN A;  4LRD A;  2W5W A;  5DLW A;  5C66 A;  5LRN A;  3NKO A;  3M7V A;  3OT9 A;  4CXK A;  1O98 A;  2W5V A;  5DLT A;  1AJD A;  4CXS A;  4KJD A;  3NKP A;  4UPL A;  5L0B A;  1KHJ A;  2G9Y A;  1FSU A;  4B56 A;  1O99 A;  1SHQ A;  2ANH A;  1KH5 A;  4N7T A;  2W5X A;  3UO0 A;  1N2L A;  3NVL A;  1URB A;  5IJQ A;  4UPK A;  4KAV A;  1E3C P;  4GTY A;  4LR7 A;  5TJ3 A;  1AJB A;  4FDJ A;  5AJ9 A;  3TWZ A;  5KXA A;  3CMR A;  4MY4 A;  2IUC A;  2W8D A;  1B8J A;  1E33 P;  4CXU A;  3SZZ A;  3BDF A;  1ED8 A;  1EI6 A;  2W5T A;  1ELY A;  3Q3Q A;  2GA3 A;  4LRC A;  3DPC A;  3ED4 A;  3TG0 A;  1EQJ A;  5LRM A;  2W5S A;  4UOO A;  4MIV A;  4LRA A;  4CYR A;  1EW8 A;  1ANJ A;  3BDH A;  2W5Q A;  5HRT A;  4ZG9 A;  3MK0 A;  4LRE A;  4KJG A;  4FDI A;  4LR8 A;  2GSO A;  1KHL A;  4LQY A;  3M8Z A;  3NKM A;  2IFY A;  3DYC A;  3IDD A;  2XR9 A;  1E2S P;  3UNY A;  1URA A;  4UOP A;  3TX0 A;  2GSN A;  4LR2 A;  2XRG A;  4UPH A;  3UN2 A;  3NKR A;  1KH4 A;  1Y6V A;  2RH6 A;  4ZGA A;  1HDH A;  2GLQ A;  1ALI A;  1K7H A;  4QAX A;  3BDG A;  1KHK A;  4LR9 A;  4NWJ A;  4TN0 A;  4GTW A;  1ALK A;  2QZU A;  3T00 A;  5L0E A;  1ELX A;  3NKN A;  1EW9 A;  4YR1 A;  3A52 A;  2IUC B;  4NWX A;  4ZG6 A;  3WAW A;  1KH7 A; 
#chains in the Genus database with same CATH homology
 4UOR A;  1ANI A;  3SZY A;  1ALH A;  3T01 A;  3IGY B;  5INH A;  3WAY A;  3LXQ A;  3UN3 A;  1AJC A;  2ZKT A;  3M8Y A;  4GTZ A;  3E2D A;  5DLV A;  1ZEF A;  3WAX A;  2W8S A;  1AJA A;  1AUK A;  3IGZ B;  4ZG7 A;  3KD8 A;  1ZEB A;  5L0K A;  1E1Z P;  1P49 A;  3T02 A;  4LRF A;  5LIA A;  5LQQ A;  4KM4 A;  4LRB A;  4GTX A;  4UPI A;  1EJJ A;  1ELZ A;  2GSU A;  5GOV A;  1N2K A;  5EGH A;  1HJK A;  3M8W A;  3B5Q A;  1Y7A A;  3UN5 A;  2W5R A;  3WAV A;  1KHN A;  1KH9 A;  5IJS A;  4KAY A;  4MHX A;  3MK1 A;  1ALJ A;  1ED9 A;  2X98 A;  5K4P A;  3MK2 A;  5EGE A;  3NKQ A;  3WBH A;  4CYS A;  5GRR A;  1EW2 A;  3BDG B;  1ZED A;  2VQR A;  1HQA A;  2D1G A;  1SHN A;  4LRD A;  2W5W A;  5DLW A;  5C66 A;  5LRN A;  3NKO A;  3M7V A;  3OT9 A;  4CXK A;  1O98 A;  2W5V A;  5DLT A;  1AJD A;  4CXS A;  4KJD A;  3NKP A;  4UPL A;  5L0B A;  1KHJ A;  2G9Y A;  1FSU A;  4B56 A;  1O99 A;  1SHQ A;  2ANH A;  1KH5 A;  4N7T A;  2W5X A;  3UO0 A;  1N2L A;  3NVL A;  1URB A;  5IJQ A;  4UPK A;  4KAV A;  1E3C P;  4GTY A;  4LR7 A;  5TJ3 A;  1AJB A;  4FDJ A;  5AJ9 A;  3TWZ A;  5KXA A;  3CMR A;  4MY4 A;  2IUC A;  2W8D A;  1B8J A;  1E33 P;  4CXU A;  3SZZ A;  3BDF A;  1ED8 A;  1EI6 A;  2W5T A;  1ELY A;  3Q3Q A;  2GA3 A;  4LRC A;  3DPC A;  3ED4 A;  3TG0 A;  1EQJ A;  5LRM A;  2W5S A;  4UOO A;  4MIV A;  4LRA A;  4CYR A;  1EW8 A;  1ANJ A;  3BDH A;  2W5Q A;  5HRT A;  4ZG9 A;  3MK0 A;  4LRE A;  4KJG A;  4FDI A;  4LR8 A;  2GSO A;  1KHL A;  4LQY A;  3M8Z A;  3NKM A;  2IFY A;  3DYC A;  3IDD A;  2XR9 A;  1E2S P;  3UNY A;  1URA A;  4UOP A;  3TX0 A;  2GSN A;  4LR2 A;  2XRG A;  4UPH A;  3UN2 A;  3NKR A;  1KH4 A;  1Y6V A;  2RH6 A;  4ZGA A;  1HDH A;  2GLQ A;  1ALI A;  1K7H A;  4QAX A;  3BDG A;  1KHK A;  4LR9 A;  4NWJ A;  4TN0 A;  4GTW A;  1ALK A;  2QZU A;  3T00 A;  5L0E A;  1ELX A;  3NKN A;  1EW9 A;  4YR1 A;  3A52 A;  2IUC B;  4NWX A;  4ZG6 A;  3WAW A;  1KH7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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