1ALJA

Alkaline phosphatase mutant (h412n)
Total Genus 164
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
Knots found
sequence length
446
structure length
446
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQENTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase (phosphoric monoester)
source organism Escherichia coli
publication title Escherichia coli alkaline phosphatase: X-ray structural studies of a mutant enzyme (His-412-->Asn) at one of the catalytically important zinc binding sites.
pubmed rcsb
molecule keywords ALKALINE PHOSPHATASE
total genus 164
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1995-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1aljA00
4UPHA 4LRCA 4LREA 4FDIA 3ED4A 4GTYA 5LQQA 5GOVA 3NKNA 1Y7AA 3OT9A 3WBHA 1EW2A 1SHNA 2W5VA 1E3CP 3A52A 5L0KA 1ELXA 2IUCA 4LRBA 1HJKA 1ZEBA 3MK0A 2W8SA 1E2SP 3UNYA 1KH9A 4CXKA 1URBA 2D1GA 2IUCB 2ANHA 5DLWA 3NKOA 4NWXA 1KH7A 3TX0A 4UOOA 4KJDA 1E1ZP 1KH4A 3BDHA 4UORA 3BDFA 4UPIA 5AJ9A 4B56A 4CXSA 3LXQA 1Y6VA 4FDJA 1P49A 3BDGA 1E33P 2W5XA 1EQJA 3M7VA 4CXUA 1HQAA 2X98A 3MK2A 3UN5A 1ZEDA 3DYCA 3BDGB 1ED8A 3CMRA 1ALHA 5EGEA 4ZG6A 1AJCA 4LRDA 5C66A 2VQRA 5INHA 1N2KA 1EJJA 1O98A 3TG0A 2XR9A 3IGYB 4LR2A 3WAXA 4MIVA 2RH6A 2W5TA 4ZG9A 5LIAA 4UPLA 3T00A 5KXAA 3MK1A 5GRRA 4GTZA 2GSOA 2W5SA 4LR7A 4UPKA 3WAVA 4N7TA 5IJSA 3E2DA 1O99A 3DPCA 5LRMA 1ANJA 4ZGAA 4KAYA 5DLTA 1KHLA 1URAA 3UO0A 4TN0A 5K4PA 1KH5A 4QAXA 4KJGA 4KM4A 1EW8A 3IGZB 2GSNA 1AUKA 3NKQA 4LRAA 1N2LA 1ALIA 3NKRA 2W8DA 5L0EA 1SHQA 5LRNA 2ZKTA 1ZEFA 1EW9A 3SZYA 1ANIA 5TJ3A 3UN3A 4NWJA 3TWZA 1KHNA 1EI6A 3WAWA 2XRGA 2G9YA 1KHJA 5L0BA 1AJAA 4GTWA 1K7HA 3M8ZA 4LR8A 4GTXA 1ED9A 3KD8A 2GSUA 3Q3QA 3IDDA 1ELZA 3SZZA 4MHXA 4YR1A 3M8YA 1AJDA 5DLVA 3NKMA 1KHKA 2W5WA 3WAYA 4LQYA 1ALJA 4LR9A 3NVLA 3B5QA 5IJQA 3UN2A 4CYRA 2GA3A 1AJBA 1HDHA 2QZUA 4MY4A 3T01A 3M8WA 1ALKA 5HRTA 5EGHA 2W5QA 1B8JA 3T02A 4CYSA 2IFYA 4KAVA 1ELYA 4UOPA 2GLQA 2W5RA 3NKPA 4ZG7A 4LRFA 1FSUA
chains in the Genus database with same CATH superfamily
4UPHA 4LRCA 4LREA 4FDIA 3ED4A 4GTYA 5LQQA 5GOVA 3NKNA 1Y7AA 3OT9A 3WBHA 1EW2A 1SHNA 2W5VA 1E3CP 3A52A 5L0KA 1ELXA 2IUCA 4LRBA 1HJKA 1ZEBA 3MK0A 2W8SA 1E2SP 3UNYA 1KH9A 4CXKA 1URBA 2D1GA 2IUCB 2ANHA 5DLWA 3NKOA 4NWXA 1KH7A 3TX0A 4UOOA 4KJDA 1E1ZP 1KH4A 3BDHA 4UORA 3BDFA 4UPIA 5AJ9A 4B56A 4CXSA 3LXQA 1Y6VA 4FDJA 1P49A 3BDGA 1E33P 2W5XA 1EQJA 3M7VA 4CXUA 1HQAA 2X98A 3MK2A 3UN5A 1ZEDA 3DYCA 3BDGB 1ED8A 3CMRA 1ALHA 5EGEA 4ZG6A 1AJCA 4LRDA 5C66A 2VQRA 5INHA 1N2KA 1EJJA 1O98A 3TG0A 2XR9A 3IGYB 4LR2A 3WAXA 4MIVA 2RH6A 2W5TA 4ZG9A 5LIAA 4UPLA 3T00A 5KXAA 3MK1A 5GRRA 4GTZA 2GSOA 2W5SA 4LR7A 4UPKA 3WAVA 4N7TA 5IJSA 3E2DA 1O99A 3DPCA 5LRMA 1ANJA 4ZGAA 4KAYA 5DLTA 1KHLA 1URAA 3UO0A 4TN0A 5K4PA 1KH5A 4QAXA 4KJGA 4KM4A 1EW8A 3IGZB 2GSNA 1AUKA 3NKQA 4LRAA 1N2LA 1ALIA 3NKRA 2W8DA 5L0EA 1SHQA 5LRNA 2ZKTA 1ZEFA 1EW9A 3SZYA 1ANIA 5TJ3A 3UN3A 4NWJA 3TWZA 1KHNA 1EI6A 3WAWA 2XRGA 2G9YA 1KHJA 5L0BA 1AJAA 4GTWA 1K7HA 3M8ZA 4LR8A 4GTXA 1ED9A 3KD8A 2GSUA 3Q3QA 3IDDA 1ELZA 3SZZA 4MHXA 4YR1A 3M8YA 1AJDA 5DLVA 3NKMA 1KHKA 2W5WA 3WAYA 4LQYA 1ALJA 4LR9A 3NVLA 3B5QA 5IJQA 3UN2A 4CYRA 2GA3A 1AJBA 1HDHA 2QZUA 4MY4A 3T01A 3M8WA 1ALKA 5HRTA 5EGHA 2W5QA 1B8JA 3T02A 4CYSA 2IFYA 4KAVA 1ELYA 4UOPA 2GLQA 2W5RA 3NKPA 4ZG7A 4LRFA 1FSUA
chains in the Genus database with same CATH topology
4UPHA 4LRCA 4LREA 4FDIA 3ED4A 4GTYA 5LQQA 5GOVA 3NKNA 1Y7AA 3OT9A 3WBHA 1EW2A 1SHNA 2W5VA 1E3CP 3A52A 5L0KA 1ELXA 2IUCA 4LRBA 1HJKA 1ZEBA 3MK0A 2W8SA 1E2SP 3UNYA 1KH9A 4CXKA 1URBA 2D1GA 2IUCB 2ANHA 5DLWA 3NKOA 4NWXA 1KH7A 3TX0A 4UOOA 4KJDA 1E1ZP 1KH4A 3BDHA 4UORA 3BDFA 4UPIA 5AJ9A 4B56A 4CXSA 3LXQA 1Y6VA 4FDJA 1P49A 3BDGA 1E33P 2W5XA 1EQJA 3M7VA 4CXUA 1HQAA 2X98A 3MK2A 3UN5A 1ZEDA 3DYCA 3BDGB 1ED8A 3CMRA 1ALHA 5EGEA 4ZG6A 1AJCA 4LRDA 5C66A 2VQRA 5INHA 1N2KA 1EJJA 1O98A 3TG0A 2XR9A 3IGYB 4LR2A 3WAXA 4MIVA 2RH6A 2W5TA 4ZG9A 5LIAA 4UPLA 3T00A 5KXAA 3MK1A 5GRRA 4GTZA 2GSOA 2W5SA 4LR7A 4UPKA 3WAVA 4N7TA 5IJSA 3E2DA 1O99A 3DPCA 5LRMA 1ANJA 4ZGAA 4KAYA 5DLTA 1KHLA 1URAA 3UO0A 4TN0A 5K4PA 1KH5A 4QAXA 4KJGA 4KM4A 1EW8A 3IGZB 2GSNA 1AUKA 3NKQA 4LRAA 1N2LA 1ALIA 3NKRA 2W8DA 5L0EA 1SHQA 5LRNA 2ZKTA 1ZEFA 1EW9A 3SZYA 1ANIA 5TJ3A 3UN3A 4NWJA 3TWZA 1KHNA 1EI6A 3WAWA 2XRGA 2G9YA 1KHJA 5L0BA 1AJAA 4GTWA 1K7HA 3M8ZA 4LR8A 4GTXA 1ED9A 3KD8A 2GSUA 3Q3QA 3IDDA 1ELZA 3SZZA 4MHXA 4YR1A 3M8YA 1AJDA 5DLVA 3NKMA 1KHKA 2W5WA 3WAYA 4LQYA 1ALJA 4LR9A 3NVLA 3B5QA 5IJQA 3UN2A 4CYRA 2GA3A 1AJBA 1HDHA 2QZUA 4MY4A 3T01A 3M8WA 1ALKA 5HRTA 5EGHA 2W5QA 1B8JA 3T02A 4CYSA 2IFYA 4KAVA 1ELYA 4UOPA 2GLQA 2W5RA 3NKPA 4ZG7A 4LRFA 1FSUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UPH A;  4LRC A;  4LRE A;  4FDI A;  3ED4 A;  4GTY A;  5LQQ A;  5GOV A;  3NKN A;  1Y7A A;  3OT9 A;  3WBH A;  1EW2 A;  1SHN A;  2W5V A;  1E3C P;  3A52 A;  5L0K A;  1ELX A;  2IUC A;  4LRB A;  1HJK A;  1ZEB A;  3MK0 A;  2W8S A;  1E2S P;  3UNY A;  1KH9 A;  4CXK A;  1URB A;  2D1G A;  2IUC B;  2ANH A;  5DLW A;  3NKO A;  4NWX A;  1KH7 A;  3TX0 A;  4UOO A;  4KJD A;  1E1Z P;  1KH4 A;  3BDH A;  4UOR A;  3BDF A;  4UPI A;  5AJ9 A;  4B56 A;  4CXS A;  3LXQ A;  1Y6V A;  4FDJ A;  1P49 A;  3BDG A;  1E33 P;  2W5X A;  1EQJ A;  3M7V A;  4CXU A;  1HQA A;  2X98 A;  3MK2 A;  3UN5 A;  1ZED A;  3DYC A;  3BDG B;  1ED8 A;  3CMR A;  1ALH A;  5EGE A;  4ZG6 A;  1AJC A;  4LRD A;  5C66 A;  2VQR A;  5INH A;  1N2K A;  1EJJ A;  1O98 A;  3TG0 A;  2XR9 A;  3IGY B;  4LR2 A;  3WAX A;  4MIV A;  2RH6 A;  2W5T A;  4ZG9 A;  5LIA A;  4UPL A;  3T00 A;  5KXA A;  3MK1 A;  5GRR A;  4GTZ A;  2GSO A;  2W5S A;  4LR7 A;  4UPK A;  3WAV A;  4N7T A;  5IJS A;  3E2D A;  1O99 A;  3DPC A;  5LRM A;  1ANJ A;  4ZGA A;  4KAY A;  5DLT A;  1KHL A;  1URA A;  3UO0 A;  4TN0 A;  5K4P A;  1KH5 A;  4QAX A;  4KJG A;  4KM4 A;  1EW8 A;  3IGZ B;  2GSN A;  1AUK A;  3NKQ A;  4LRA A;  1N2L A;  1ALI A;  3NKR A;  2W8D A;  5L0E A;  1SHQ A;  5LRN A;  2ZKT A;  1ZEF A;  1EW9 A;  3SZY A;  1ANI A;  5TJ3 A;  3UN3 A;  4NWJ A;  3TWZ A;  1KHN A;  1EI6 A;  3WAW A;  2XRG A;  2G9Y A;  1KHJ A;  5L0B A;  1AJA A;  4GTW A;  1K7H A;  3M8Z A;  4LR8 A;  4GTX A;  1ED9 A;  3KD8 A;  2GSU A;  3Q3Q A;  3IDD A;  1ELZ A;  3SZZ A;  4MHX A;  4YR1 A;  3M8Y A;  1AJD A;  5DLV A;  3NKM A;  1KHK A;  2W5W A;  3WAY A;  4LQY A;  1ALJ A;  4LR9 A;  3NVL A;  3B5Q A;  5IJQ A;  3UN2 A;  4CYR A;  2GA3 A;  1AJB A;  1HDH A;  2QZU A;  4MY4 A;  3T01 A;  3M8W A;  1ALK A;  5HRT A;  5EGH A;  2W5Q A;  1B8J A;  3T02 A;  4CYS A;  2IFY A;  4KAV A;  1ELY A;  4UOP A;  2GLQ A;  2W5R A;  3NKP A;  4ZG7 A;  4LRF A;  1FSU A; 
#chains in the Genus database with same CATH topology
 4UPH A;  4LRC A;  4LRE A;  4FDI A;  3ED4 A;  4GTY A;  5LQQ A;  5GOV A;  3NKN A;  1Y7A A;  3OT9 A;  3WBH A;  1EW2 A;  1SHN A;  2W5V A;  1E3C P;  3A52 A;  5L0K A;  1ELX A;  2IUC A;  4LRB A;  1HJK A;  1ZEB A;  3MK0 A;  2W8S A;  1E2S P;  3UNY A;  1KH9 A;  4CXK A;  1URB A;  2D1G A;  2IUC B;  2ANH A;  5DLW A;  3NKO A;  4NWX A;  1KH7 A;  3TX0 A;  4UOO A;  4KJD A;  1E1Z P;  1KH4 A;  3BDH A;  4UOR A;  3BDF A;  4UPI A;  5AJ9 A;  4B56 A;  4CXS A;  3LXQ A;  1Y6V A;  4FDJ A;  1P49 A;  3BDG A;  1E33 P;  2W5X A;  1EQJ A;  3M7V A;  4CXU A;  1HQA A;  2X98 A;  3MK2 A;  3UN5 A;  1ZED A;  3DYC A;  3BDG B;  1ED8 A;  3CMR A;  1ALH A;  5EGE A;  4ZG6 A;  1AJC A;  4LRD A;  5C66 A;  2VQR A;  5INH A;  1N2K A;  1EJJ A;  1O98 A;  3TG0 A;  2XR9 A;  3IGY B;  4LR2 A;  3WAX A;  4MIV A;  2RH6 A;  2W5T A;  4ZG9 A;  5LIA A;  4UPL A;  3T00 A;  5KXA A;  3MK1 A;  5GRR A;  4GTZ A;  2GSO A;  2W5S A;  4LR7 A;  4UPK A;  3WAV A;  4N7T A;  5IJS A;  3E2D A;  1O99 A;  3DPC A;  5LRM A;  1ANJ A;  4ZGA A;  4KAY A;  5DLT A;  1KHL A;  1URA A;  3UO0 A;  4TN0 A;  5K4P A;  1KH5 A;  4QAX A;  4KJG A;  4KM4 A;  1EW8 A;  3IGZ B;  2GSN A;  1AUK A;  3NKQ A;  4LRA A;  1N2L A;  1ALI A;  3NKR A;  2W8D A;  5L0E A;  1SHQ A;  5LRN A;  2ZKT A;  1ZEF A;  1EW9 A;  3SZY A;  1ANI A;  5TJ3 A;  3UN3 A;  4NWJ A;  3TWZ A;  1KHN A;  1EI6 A;  3WAW A;  2XRG A;  2G9Y A;  1KHJ A;  5L0B A;  1AJA A;  4GTW A;  1K7H A;  3M8Z A;  4LR8 A;  4GTX A;  1ED9 A;  3KD8 A;  2GSU A;  3Q3Q A;  3IDD A;  1ELZ A;  3SZZ A;  4MHX A;  4YR1 A;  3M8Y A;  1AJD A;  5DLV A;  3NKM A;  1KHK A;  2W5W A;  3WAY A;  4LQY A;  1ALJ A;  4LR9 A;  3NVL A;  3B5Q A;  5IJQ A;  3UN2 A;  4CYR A;  2GA3 A;  1AJB A;  1HDH A;  2QZU A;  4MY4 A;  3T01 A;  3M8W A;  1ALK A;  5HRT A;  5EGH A;  2W5Q A;  1B8J A;  3T02 A;  4CYS A;  2IFY A;  4KAV A;  1ELY A;  4UOP A;  2GLQ A;  2W5R A;  3NKP A;  4ZG7 A;  4LRF A;  1FSU A; 
#chains in the Genus database with same CATH homology
 4UPH A;  4LRC A;  4LRE A;  4FDI A;  3ED4 A;  4GTY A;  5LQQ A;  5GOV A;  3NKN A;  1Y7A A;  3OT9 A;  3WBH A;  1EW2 A;  1SHN A;  2W5V A;  1E3C P;  3A52 A;  5L0K A;  1ELX A;  2IUC A;  4LRB A;  1HJK A;  1ZEB A;  3MK0 A;  2W8S A;  1E2S P;  3UNY A;  1KH9 A;  4CXK A;  1URB A;  2D1G A;  2IUC B;  2ANH A;  5DLW A;  3NKO A;  4NWX A;  1KH7 A;  3TX0 A;  4UOO A;  4KJD A;  1E1Z P;  1KH4 A;  3BDH A;  4UOR A;  3BDF A;  4UPI A;  5AJ9 A;  4B56 A;  4CXS A;  3LXQ A;  1Y6V A;  4FDJ A;  1P49 A;  3BDG A;  1E33 P;  2W5X A;  1EQJ A;  3M7V A;  4CXU A;  1HQA A;  2X98 A;  3MK2 A;  3UN5 A;  1ZED A;  3DYC A;  3BDG B;  1ED8 A;  3CMR A;  1ALH A;  5EGE A;  4ZG6 A;  1AJC A;  4LRD A;  5C66 A;  2VQR A;  5INH A;  1N2K A;  1EJJ A;  1O98 A;  3TG0 A;  2XR9 A;  3IGY B;  4LR2 A;  3WAX A;  4MIV A;  2RH6 A;  2W5T A;  4ZG9 A;  5LIA A;  4UPL A;  3T00 A;  5KXA A;  3MK1 A;  5GRR A;  4GTZ A;  2GSO A;  2W5S A;  4LR7 A;  4UPK A;  3WAV A;  4N7T A;  5IJS A;  3E2D A;  1O99 A;  3DPC A;  5LRM A;  1ANJ A;  4ZGA A;  4KAY A;  5DLT A;  1KHL A;  1URA A;  3UO0 A;  4TN0 A;  5K4P A;  1KH5 A;  4QAX A;  4KJG A;  4KM4 A;  1EW8 A;  3IGZ B;  2GSN A;  1AUK A;  3NKQ A;  4LRA A;  1N2L A;  1ALI A;  3NKR A;  2W8D A;  5L0E A;  1SHQ A;  5LRN A;  2ZKT A;  1ZEF A;  1EW9 A;  3SZY A;  1ANI A;  5TJ3 A;  3UN3 A;  4NWJ A;  3TWZ A;  1KHN A;  1EI6 A;  3WAW A;  2XRG A;  2G9Y A;  1KHJ A;  5L0B A;  1AJA A;  4GTW A;  1K7H A;  3M8Z A;  4LR8 A;  4GTX A;  1ED9 A;  3KD8 A;  2GSU A;  3Q3Q A;  3IDD A;  1ELZ A;  3SZZ A;  4MHX A;  4YR1 A;  3M8Y A;  1AJD A;  5DLV A;  3NKM A;  1KHK A;  2W5W A;  3WAY A;  4LQY A;  1ALJ A;  4LR9 A;  3NVL A;  3B5Q A;  5IJQ A;  3UN2 A;  4CYR A;  2GA3 A;  1AJB A;  1HDH A;  2QZU A;  4MY4 A;  3T01 A;  3M8W A;  1ALK A;  5HRT A;  5EGH A;  2W5Q A;  1B8J A;  3T02 A;  4CYS A;  2IFY A;  4KAV A;  1ELY A;  4UOP A;  2GLQ A;  2W5R A;  3NKP A;  4ZG7 A;  4LRF A;  1FSU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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