1KH5A

E. coli alkaline phosphatase mutant (d330n) mimic of the transition states with aluminium fluoride
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
Knots found
sequence length
444
structure length
444
Chain Sequence
VLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQNHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Escherichia coli
publication title Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
total genus 151
structure length 444
sequence length 444
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1kh5A00
2GSUA 1O99A 4UPKA 1AJDA 3WBHA 5INHA 4FDJA 5LRMA 1AUKA 5IJSA 2ZKTA 2D1GA 1EJJA 5DLVA 1ALIA 4CYSA 5HRTA 3E2DA 3SZYA 1URAA 4CYRA 5LIAA 1E2SP 5EGEA 1EI6A 3BDHA 1ALKA 3TWZA 3UN2A 4GTYA 3CMRA 3M8YA 4LR8A 4KAVA 3NKMA 4MHXA 3UO0A 5L0BA 5TJ3A 4LREA 5L0EA 2W8DA 1ZEDA 4GTWA 2W8SA 3IDDA 5GOVA 4LR2A 1AJAA 1ELXA 1HQAA 5DLTA 1FSUA 4UOPA 1ELYA 1K7HA 1N2LA 1ANJA 3OT9A 4MIVA 3WAVA 5C66A 1EW2A 3A52A 1EQJA 1EW9A 3B5QA 3IGYB 3NVLA 2GA3A 5AJ9A 1HDHA 2RH6A 1Y7AA 5GRRA 3LXQA 3M8WA 3WAYA 4NWXA 3MK1A 2XRGA 4GTXA 3Q3QA 4KJDA 3T02A 5KXAA 3T01A 5IJQA 3BDGA 4TN0A 5DLWA 2X98A 4NWJA 2GLQA 1B8JA 1KHJA 3UN3A 4LRFA 4CXUA 3DYCA 2W5QA 1KH9A 1HJKA 1ALHA 4LRBA 4LRDA 2QZUA 4LRAA 2W5WA 4LQYA 3WAWA 1AJCA 2IUCA 5K4PA 5L0KA 2ANHA 4CXKA 1ZEFA 1E1ZP 4UOOA 4CXSA 1KH5A 3BDFA 1ELZA 5LRNA 2GSNA 1SHNA 4LR7A 3MK0A 4UPIA 3MK2A 1ALJA 1ED9A 3M7VA 2W5SA 2IFYA 1KH7A 3IGZB 3NKQA 1E3CP 3UN5A 1ED8A 1P49A 1SHQA 4ZGAA 3NKOA 1N2KA 3ED4A 2W5XA 3TG0A 2W5RA 1KH4A 2XR9A 4GTZA 3T00A 4ZG6A 3WAXA 4B56A 2W5VA 3M8ZA 1E33P 4QAXA 2GSOA 4LR9A 4MY4A 4UPHA 1Y6VA 2VQRA 5LQQA 1KHLA 1URBA 1O98A 3BDGB 3KD8A 4KJGA 4UORA 4FDIA 3UNYA 3TX0A 3NKPA 3NKRA 3NKNA 3DPCA 1ANIA 1ZEBA 4N7TA 1EW8A 2W5TA 2IUCB 4KAYA 3SZZA 2G9YA 1KHKA 4LRCA 4ZG9A 1AJBA 4YR1A 4KM4A 1KHNA 4ZG7A 5EGHA 4UPLA
chains in the Genus database with same CATH superfamily
2GSUA 1O99A 4UPKA 1AJDA 3WBHA 5INHA 4FDJA 5LRMA 1AUKA 5IJSA 2ZKTA 2D1GA 1EJJA 5DLVA 1ALIA 4CYSA 5HRTA 3E2DA 3SZYA 1URAA 4CYRA 5LIAA 1E2SP 5EGEA 1EI6A 3BDHA 1ALKA 3TWZA 3UN2A 4GTYA 3CMRA 3M8YA 4LR8A 4KAVA 3NKMA 4MHXA 3UO0A 5L0BA 5TJ3A 4LREA 5L0EA 2W8DA 1ZEDA 4GTWA 2W8SA 3IDDA 5GOVA 4LR2A 1AJAA 1ELXA 1HQAA 5DLTA 1FSUA 4UOPA 1ELYA 1K7HA 1N2LA 1ANJA 3OT9A 4MIVA 3WAVA 5C66A 1EW2A 3A52A 1EQJA 1EW9A 3B5QA 3IGYB 3NVLA 2GA3A 5AJ9A 1HDHA 2RH6A 1Y7AA 5GRRA 3LXQA 3M8WA 3WAYA 4NWXA 3MK1A 2XRGA 4GTXA 3Q3QA 4KJDA 3T02A 5KXAA 3T01A 5IJQA 3BDGA 4TN0A 5DLWA 2X98A 4NWJA 2GLQA 1B8JA 1KHJA 3UN3A 4LRFA 4CXUA 3DYCA 2W5QA 1KH9A 1HJKA 1ALHA 4LRBA 4LRDA 2QZUA 4LRAA 2W5WA 4LQYA 3WAWA 1AJCA 2IUCA 5K4PA 5L0KA 2ANHA 4CXKA 1ZEFA 1E1ZP 4UOOA 4CXSA 1KH5A 3BDFA 1ELZA 5LRNA 2GSNA 1SHNA 4LR7A 3MK0A 4UPIA 3MK2A 1ALJA 1ED9A 3M7VA 2W5SA 2IFYA 1KH7A 3IGZB 3NKQA 1E3CP 3UN5A 1ED8A 1P49A 1SHQA 4ZGAA 3NKOA 1N2KA 3ED4A 2W5XA 3TG0A 2W5RA 1KH4A 2XR9A 4GTZA 3T00A 4ZG6A 3WAXA 4B56A 2W5VA 3M8ZA 1E33P 4QAXA 2GSOA 4LR9A 4MY4A 4UPHA 1Y6VA 2VQRA 5LQQA 1KHLA 1URBA 1O98A 3BDGB 3KD8A 4KJGA 4UORA 4FDIA 3UNYA 3TX0A 3NKPA 3NKRA 3NKNA 3DPCA 1ANIA 1ZEBA 4N7TA 1EW8A 2W5TA 2IUCB 4KAYA 3SZZA 2G9YA 1KHKA 4LRCA 4ZG9A 1AJBA 4YR1A 4KM4A 1KHNA 4ZG7A 5EGHA 4UPLA
chains in the Genus database with same CATH topology
2GSUA 1O99A 4UPKA 1AJDA 3WBHA 5INHA 4FDJA 5LRMA 1AUKA 5IJSA 2ZKTA 2D1GA 1EJJA 5DLVA 1ALIA 4CYSA 5HRTA 3E2DA 3SZYA 1URAA 4CYRA 5LIAA 1E2SP 5EGEA 1EI6A 3BDHA 1ALKA 3TWZA 3UN2A 4GTYA 3CMRA 3M8YA 4LR8A 4KAVA 3NKMA 4MHXA 3UO0A 5L0BA 5TJ3A 4LREA 5L0EA 2W8DA 1ZEDA 4GTWA 2W8SA 3IDDA 5GOVA 4LR2A 1AJAA 1ELXA 1HQAA 5DLTA 1FSUA 4UOPA 1ELYA 1K7HA 1N2LA 1ANJA 3OT9A 4MIVA 3WAVA 5C66A 1EW2A 3A52A 1EQJA 1EW9A 3B5QA 3IGYB 3NVLA 2GA3A 5AJ9A 1HDHA 2RH6A 1Y7AA 5GRRA 3LXQA 3M8WA 3WAYA 4NWXA 3MK1A 2XRGA 4GTXA 3Q3QA 4KJDA 3T02A 5KXAA 3T01A 5IJQA 3BDGA 4TN0A 5DLWA 2X98A 4NWJA 2GLQA 1B8JA 1KHJA 3UN3A 4LRFA 4CXUA 3DYCA 2W5QA 1KH9A 1HJKA 1ALHA 4LRBA 4LRDA 2QZUA 4LRAA 2W5WA 4LQYA 3WAWA 1AJCA 2IUCA 5K4PA 5L0KA 2ANHA 4CXKA 1ZEFA 1E1ZP 4UOOA 4CXSA 1KH5A 3BDFA 1ELZA 5LRNA 2GSNA 1SHNA 4LR7A 3MK0A 4UPIA 3MK2A 1ALJA 1ED9A 3M7VA 2W5SA 2IFYA 1KH7A 3IGZB 3NKQA 1E3CP 3UN5A 1ED8A 1P49A 1SHQA 4ZGAA 3NKOA 1N2KA 3ED4A 2W5XA 3TG0A 2W5RA 1KH4A 2XR9A 4GTZA 3T00A 4ZG6A 3WAXA 4B56A 2W5VA 3M8ZA 1E33P 4QAXA 2GSOA 4LR9A 4MY4A 4UPHA 1Y6VA 2VQRA 5LQQA 1KHLA 1URBA 1O98A 3BDGB 3KD8A 4KJGA 4UORA 4FDIA 3UNYA 3TX0A 3NKPA 3NKRA 3NKNA 3DPCA 1ANIA 1ZEBA 4N7TA 1EW8A 2W5TA 2IUCB 4KAYA 3SZZA 2G9YA 1KHKA 4LRCA 4ZG9A 1AJBA 4YR1A 4KM4A 1KHNA 4ZG7A 5EGHA 4UPLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GSU A;  1O99 A;  4UPK A;  1AJD A;  3WBH A;  5INH A;  4FDJ A;  5LRM A;  1AUK A;  5IJS A;  2ZKT A;  2D1G A;  1EJJ A;  5DLV A;  1ALI A;  4CYS A;  5HRT A;  3E2D A;  3SZY A;  1URA A;  4CYR A;  5LIA A;  1E2S P;  5EGE A;  1EI6 A;  3BDH A;  1ALK A;  3TWZ A;  3UN2 A;  4GTY A;  3CMR A;  3M8Y A;  4LR8 A;  4KAV A;  3NKM A;  4MHX A;  3UO0 A;  5L0B A;  5TJ3 A;  4LRE A;  5L0E A;  2W8D A;  1ZED A;  4GTW A;  2W8S A;  3IDD A;  5GOV A;  4LR2 A;  1AJA A;  1ELX A;  1HQA A;  5DLT A;  1FSU A;  4UOP A;  1ELY A;  1K7H A;  1N2L A;  1ANJ A;  3OT9 A;  4MIV A;  3WAV A;  5C66 A;  1EW2 A;  3A52 A;  1EQJ A;  1EW9 A;  3B5Q A;  3IGY B;  3NVL A;  2GA3 A;  5AJ9 A;  1HDH A;  2RH6 A;  1Y7A A;  5GRR A;  3LXQ A;  3M8W A;  3WAY A;  4NWX A;  3MK1 A;  2XRG A;  4GTX A;  3Q3Q A;  4KJD A;  3T02 A;  5KXA A;  3T01 A;  5IJQ A;  3BDG A;  4TN0 A;  5DLW A;  2X98 A;  4NWJ A;  2GLQ A;  1B8J A;  1KHJ A;  3UN3 A;  4LRF A;  4CXU A;  3DYC A;  2W5Q A;  1KH9 A;  1HJK A;  1ALH A;  4LRB A;  4LRD A;  2QZU A;  4LRA A;  2W5W A;  4LQY A;  3WAW A;  1AJC A;  2IUC A;  5K4P A;  5L0K A;  2ANH A;  4CXK A;  1ZEF A;  1E1Z P;  4UOO A;  4CXS A;  1KH5 A;  3BDF A;  1ELZ A;  5LRN A;  2GSN A;  1SHN A;  4LR7 A;  3MK0 A;  4UPI A;  3MK2 A;  1ALJ A;  1ED9 A;  3M7V A;  2W5S A;  2IFY A;  1KH7 A;  3IGZ B;  3NKQ A;  1E3C P;  3UN5 A;  1ED8 A;  1P49 A;  1SHQ A;  4ZGA A;  3NKO A;  1N2K A;  3ED4 A;  2W5X A;  3TG0 A;  2W5R A;  1KH4 A;  2XR9 A;  4GTZ A;  3T00 A;  4ZG6 A;  3WAX A;  4B56 A;  2W5V A;  3M8Z A;  1E33 P;  4QAX A;  2GSO A;  4LR9 A;  4MY4 A;  4UPH A;  1Y6V A;  2VQR A;  5LQQ A;  1KHL A;  1URB A;  1O98 A;  3BDG B;  3KD8 A;  4KJG A;  4UOR A;  4FDI A;  3UNY A;  3TX0 A;  3NKP A;  3NKR A;  3NKN A;  3DPC A;  1ANI A;  1ZEB A;  4N7T A;  1EW8 A;  2W5T A;  2IUC B;  4KAY A;  3SZZ A;  2G9Y A;  1KHK A;  4LRC A;  4ZG9 A;  1AJB A;  4YR1 A;  4KM4 A;  1KHN A;  4ZG7 A;  5EGH A;  4UPL A; 
#chains in the Genus database with same CATH topology
 2GSU A;  1O99 A;  4UPK A;  1AJD A;  3WBH A;  5INH A;  4FDJ A;  5LRM A;  1AUK A;  5IJS A;  2ZKT A;  2D1G A;  1EJJ A;  5DLV A;  1ALI A;  4CYS A;  5HRT A;  3E2D A;  3SZY A;  1URA A;  4CYR A;  5LIA A;  1E2S P;  5EGE A;  1EI6 A;  3BDH A;  1ALK A;  3TWZ A;  3UN2 A;  4GTY A;  3CMR A;  3M8Y A;  4LR8 A;  4KAV A;  3NKM A;  4MHX A;  3UO0 A;  5L0B A;  5TJ3 A;  4LRE A;  5L0E A;  2W8D A;  1ZED A;  4GTW A;  2W8S A;  3IDD A;  5GOV A;  4LR2 A;  1AJA A;  1ELX A;  1HQA A;  5DLT A;  1FSU A;  4UOP A;  1ELY A;  1K7H A;  1N2L A;  1ANJ A;  3OT9 A;  4MIV A;  3WAV A;  5C66 A;  1EW2 A;  3A52 A;  1EQJ A;  1EW9 A;  3B5Q A;  3IGY B;  3NVL A;  2GA3 A;  5AJ9 A;  1HDH A;  2RH6 A;  1Y7A A;  5GRR A;  3LXQ A;  3M8W A;  3WAY A;  4NWX A;  3MK1 A;  2XRG A;  4GTX A;  3Q3Q A;  4KJD A;  3T02 A;  5KXA A;  3T01 A;  5IJQ A;  3BDG A;  4TN0 A;  5DLW A;  2X98 A;  4NWJ A;  2GLQ A;  1B8J A;  1KHJ A;  3UN3 A;  4LRF A;  4CXU A;  3DYC A;  2W5Q A;  1KH9 A;  1HJK A;  1ALH A;  4LRB A;  4LRD A;  2QZU A;  4LRA A;  2W5W A;  4LQY A;  3WAW A;  1AJC A;  2IUC A;  5K4P A;  5L0K A;  2ANH A;  4CXK A;  1ZEF A;  1E1Z P;  4UOO A;  4CXS A;  1KH5 A;  3BDF A;  1ELZ A;  5LRN A;  2GSN A;  1SHN A;  4LR7 A;  3MK0 A;  4UPI A;  3MK2 A;  1ALJ A;  1ED9 A;  3M7V A;  2W5S A;  2IFY A;  1KH7 A;  3IGZ B;  3NKQ A;  1E3C P;  3UN5 A;  1ED8 A;  1P49 A;  1SHQ A;  4ZGA A;  3NKO A;  1N2K A;  3ED4 A;  2W5X A;  3TG0 A;  2W5R A;  1KH4 A;  2XR9 A;  4GTZ A;  3T00 A;  4ZG6 A;  3WAX A;  4B56 A;  2W5V A;  3M8Z A;  1E33 P;  4QAX A;  2GSO A;  4LR9 A;  4MY4 A;  4UPH A;  1Y6V A;  2VQR A;  5LQQ A;  1KHL A;  1URB A;  1O98 A;  3BDG B;  3KD8 A;  4KJG A;  4UOR A;  4FDI A;  3UNY A;  3TX0 A;  3NKP A;  3NKR A;  3NKN A;  3DPC A;  1ANI A;  1ZEB A;  4N7T A;  1EW8 A;  2W5T A;  2IUC B;  4KAY A;  3SZZ A;  2G9Y A;  1KHK A;  4LRC A;  4ZG9 A;  1AJB A;  4YR1 A;  4KM4 A;  1KHN A;  4ZG7 A;  5EGH A;  4UPL A; 
#chains in the Genus database with same CATH homology
 2GSU A;  1O99 A;  4UPK A;  1AJD A;  3WBH A;  5INH A;  4FDJ A;  5LRM A;  1AUK A;  5IJS A;  2ZKT A;  2D1G A;  1EJJ A;  5DLV A;  1ALI A;  4CYS A;  5HRT A;  3E2D A;  3SZY A;  1URA A;  4CYR A;  5LIA A;  1E2S P;  5EGE A;  1EI6 A;  3BDH A;  1ALK A;  3TWZ A;  3UN2 A;  4GTY A;  3CMR A;  3M8Y A;  4LR8 A;  4KAV A;  3NKM A;  4MHX A;  3UO0 A;  5L0B A;  5TJ3 A;  4LRE A;  5L0E A;  2W8D A;  1ZED A;  4GTW A;  2W8S A;  3IDD A;  5GOV A;  4LR2 A;  1AJA A;  1ELX A;  1HQA A;  5DLT A;  1FSU A;  4UOP A;  1ELY A;  1K7H A;  1N2L A;  1ANJ A;  3OT9 A;  4MIV A;  3WAV A;  5C66 A;  1EW2 A;  3A52 A;  1EQJ A;  1EW9 A;  3B5Q A;  3IGY B;  3NVL A;  2GA3 A;  5AJ9 A;  1HDH A;  2RH6 A;  1Y7A A;  5GRR A;  3LXQ A;  3M8W A;  3WAY A;  4NWX A;  3MK1 A;  2XRG A;  4GTX A;  3Q3Q A;  4KJD A;  3T02 A;  5KXA A;  3T01 A;  5IJQ A;  3BDG A;  4TN0 A;  5DLW A;  2X98 A;  4NWJ A;  2GLQ A;  1B8J A;  1KHJ A;  3UN3 A;  4LRF A;  4CXU A;  3DYC A;  2W5Q A;  1KH9 A;  1HJK A;  1ALH A;  4LRB A;  4LRD A;  2QZU A;  4LRA A;  2W5W A;  4LQY A;  3WAW A;  1AJC A;  2IUC A;  5K4P A;  5L0K A;  2ANH A;  4CXK A;  1ZEF A;  1E1Z P;  4UOO A;  4CXS A;  1KH5 A;  3BDF A;  1ELZ A;  5LRN A;  2GSN A;  1SHN A;  4LR7 A;  3MK0 A;  4UPI A;  3MK2 A;  1ALJ A;  1ED9 A;  3M7V A;  2W5S A;  2IFY A;  1KH7 A;  3IGZ B;  3NKQ A;  1E3C P;  3UN5 A;  1ED8 A;  1P49 A;  1SHQ A;  4ZGA A;  3NKO A;  1N2K A;  3ED4 A;  2W5X A;  3TG0 A;  2W5R A;  1KH4 A;  2XR9 A;  4GTZ A;  3T00 A;  4ZG6 A;  3WAX A;  4B56 A;  2W5V A;  3M8Z A;  1E33 P;  4QAX A;  2GSO A;  4LR9 A;  4MY4 A;  4UPH A;  1Y6V A;  2VQR A;  5LQQ A;  1KHL A;  1URB A;  1O98 A;  3BDG B;  3KD8 A;  4KJG A;  4UOR A;  4FDI A;  3UNY A;  3TX0 A;  3NKP A;  3NKR A;  3NKN A;  3DPC A;  1ANI A;  1ZEB A;  4N7T A;  1EW8 A;  2W5T A;  2IUC B;  4KAY A;  3SZZ A;  2G9Y A;  1KHK A;  4LRC A;  4ZG9 A;  1AJB A;  4YR1 A;  4KM4 A;  1KHN A;  4ZG7 A;  5EGH A;  4UPL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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