1KH5A

E. coli alkaline phosphatase mutant (d330n) mimic of the transition states with aluminium fluoride
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
Knots found
sequence length
444
structure length
444
Chain Sequence
VLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQNHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords ALKALINE PHOSPHATASE
publication title Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 151
structure length 444
sequence length 444
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1kh5A00
4KJDA 5L0BA 3UN3A 4LRCA 5C66A 3WAYA 5L0KA 4UORA 3T02A 4CYSA 1URAA 4CXKA 1EJJA 3MK2A 1O99A 2W5QA 3E2DA 1KH9A 5AJ9A 4MIVA 4LREA 5EGEA 3MK1A 4NWJA 3M7VA 2W5WA 1SHQA 2IFYA 4LR2A 2IUCA 2VQRA 3IGZB 1K7HA 2GSOA 2W8DA 4FDIA 4UPKA 5EGHA 5KXAA 1O98A 2GSUA 4LQYA 1ED9A 4KAVA 1EW2A 5HRTA 3UNYA 5LRNA 4FDJA 1KH5A 3M8ZA 3Q3QA 1ANJA 1AUKA 1ANIA 4MY4A 1URBA 2W5SA 4ZG9A 3T00A 1Y6VA 4UPLA 3WAXA 1ELXA 3BDHA 4N7TA 1ZEDA 4ZG6A 2RH6A 1EW8A 3BDGA 1E2SP 2ZKTA 3TG0A 1SHNA 4UOPA 1EW9A 2IUCB 1N2LA 4LR9A 1KH4A 5GOVA 4CXSA 4YR1A 3IGYB 5INHA 1KHJA 3WAWA 4GTYA 1KHLA 3SZYA 3WBHA 4KJGA 3DYCA 4LRFA 5TJ3A 1ALKA 3NKRA 1N2KA 4GTWA 1AJBA 3UN2A 4MHXA 4LR8A 1P49A 4LRDA 2XRGA 5IJSA 1AJCA 1EQJA 3UN5A 5IJQA 2GSNA 2GLQA 4ZGAA 3BDGB 4LRAA 3B5QA 1Y7AA 2W5VA 5LRMA 2X98A 4UOOA 1ALIA 1ELZA 3M8WA 1E33P 3TWZA 2GA3A 1B8JA 4UPHA 5GRRA 3IDDA 1AJDA 3NKNA 1KHNA 2D1GA 3TX0A 1HDHA 1ELYA 4TN0A 5DLWA 3T01A 1E1ZP 3NKMA 2XR9A 4ZG7A 2G9YA 5K4PA 1AJAA 3DPCA 3MK0A 1ZEFA 4CXUA 3NKQA 1KH7A 3OT9A 1ZEBA 4GTXA 4CYRA 5LQQA 1FSUA 3LXQA 3WAVA 4QAXA 1ALHA 1ED8A 2W5XA 4KM4A 5LIAA 1ALJA 4B56A 3M8YA 1KHKA 2W5RA 3A52A 4KAYA 1E3CP 2QZUA 3KD8A 4UPIA 3NKOA 5DLTA 3ED4A 3SZZA 1HJKA 1EI6A 3UO0A 3NKPA 5DLVA 5L0EA 3BDFA 2W5TA 4LRBA 4GTZA 2ANHA 1HQAA 2W8SA 3CMRA 4LR7A 3NVLA 4NWXA
chains in the Genus database with same CATH superfamily
4KJDA 5L0BA 3UN3A 4LRCA 5C66A 3WAYA 5L0KA 4UORA 3T02A 4CYSA 1URAA 4CXKA 1EJJA 3MK2A 1O99A 2W5QA 3E2DA 1KH9A 5AJ9A 4MIVA 4LREA 5EGEA 3MK1A 4NWJA 3M7VA 2W5WA 1SHQA 2IFYA 4LR2A 2IUCA 2VQRA 3IGZB 1K7HA 2GSOA 2W8DA 4FDIA 4UPKA 5EGHA 5KXAA 1O98A 2GSUA 4LQYA 1ED9A 4KAVA 1EW2A 5HRTA 3UNYA 5LRNA 4FDJA 1KH5A 3M8ZA 3Q3QA 1ANJA 1AUKA 1ANIA 4MY4A 1URBA 2W5SA 4ZG9A 3T00A 1Y6VA 4UPLA 3WAXA 1ELXA 3BDHA 4N7TA 1ZEDA 4ZG6A 2RH6A 1EW8A 3BDGA 1E2SP 2ZKTA 3TG0A 1SHNA 4UOPA 1EW9A 2IUCB 1N2LA 4LR9A 1KH4A 5GOVA 4CXSA 4YR1A 3IGYB 5INHA 1KHJA 3WAWA 4GTYA 1KHLA 3SZYA 3WBHA 4KJGA 3DYCA 4LRFA 5TJ3A 1ALKA 3NKRA 1N2KA 4GTWA 1AJBA 3UN2A 4MHXA 4LR8A 1P49A 4LRDA 2XRGA 5IJSA 1AJCA 1EQJA 3UN5A 5IJQA 2GSNA 2GLQA 4ZGAA 3BDGB 4LRAA 3B5QA 1Y7AA 2W5VA 5LRMA 2X98A 4UOOA 1ALIA 1ELZA 3M8WA 1E33P 3TWZA 2GA3A 1B8JA 4UPHA 5GRRA 3IDDA 1AJDA 3NKNA 1KHNA 2D1GA 3TX0A 1HDHA 1ELYA 4TN0A 5DLWA 3T01A 1E1ZP 3NKMA 2XR9A 4ZG7A 2G9YA 5K4PA 1AJAA 3DPCA 3MK0A 1ZEFA 4CXUA 3NKQA 1KH7A 3OT9A 1ZEBA 4GTXA 4CYRA 5LQQA 1FSUA 3LXQA 3WAVA 4QAXA 1ALHA 1ED8A 2W5XA 4KM4A 5LIAA 1ALJA 4B56A 3M8YA 1KHKA 2W5RA 3A52A 4KAYA 1E3CP 2QZUA 3KD8A 4UPIA 3NKOA 5DLTA 3ED4A 3SZZA 1HJKA 1EI6A 3UO0A 3NKPA 5DLVA 5L0EA 3BDFA 2W5TA 4LRBA 4GTZA 2ANHA 1HQAA 2W8SA 3CMRA 4LR7A 3NVLA 4NWXA
chains in the Genus database with same CATH topology
4KJDA 5L0BA 3UN3A 4LRCA 5C66A 3WAYA 5L0KA 4UORA 3T02A 4CYSA 1URAA 4CXKA 1EJJA 3MK2A 1O99A 2W5QA 3E2DA 1KH9A 5AJ9A 4MIVA 4LREA 5EGEA 3MK1A 4NWJA 3M7VA 2W5WA 1SHQA 2IFYA 4LR2A 2IUCA 2VQRA 3IGZB 1K7HA 2GSOA 2W8DA 4FDIA 4UPKA 5EGHA 5KXAA 1O98A 2GSUA 4LQYA 1ED9A 4KAVA 1EW2A 5HRTA 3UNYA 5LRNA 4FDJA 1KH5A 3M8ZA 3Q3QA 1ANJA 1AUKA 1ANIA 4MY4A 1URBA 2W5SA 4ZG9A 3T00A 1Y6VA 4UPLA 3WAXA 1ELXA 3BDHA 4N7TA 1ZEDA 4ZG6A 2RH6A 1EW8A 3BDGA 1E2SP 2ZKTA 3TG0A 1SHNA 4UOPA 1EW9A 2IUCB 1N2LA 4LR9A 1KH4A 5GOVA 4CXSA 4YR1A 3IGYB 5INHA 1KHJA 3WAWA 4GTYA 1KHLA 3SZYA 3WBHA 4KJGA 3DYCA 4LRFA 5TJ3A 1ALKA 3NKRA 1N2KA 4GTWA 1AJBA 3UN2A 4MHXA 4LR8A 1P49A 4LRDA 2XRGA 5IJSA 1AJCA 1EQJA 3UN5A 5IJQA 2GSNA 2GLQA 4ZGAA 3BDGB 4LRAA 3B5QA 1Y7AA 2W5VA 5LRMA 2X98A 4UOOA 1ALIA 1ELZA 3M8WA 1E33P 3TWZA 2GA3A 1B8JA 4UPHA 5GRRA 3IDDA 1AJDA 3NKNA 1KHNA 2D1GA 3TX0A 1HDHA 1ELYA 4TN0A 5DLWA 3T01A 1E1ZP 3NKMA 2XR9A 4ZG7A 2G9YA 5K4PA 1AJAA 3DPCA 3MK0A 1ZEFA 4CXUA 3NKQA 1KH7A 3OT9A 1ZEBA 4GTXA 4CYRA 5LQQA 1FSUA 3LXQA 3WAVA 4QAXA 1ALHA 1ED8A 2W5XA 4KM4A 5LIAA 1ALJA 4B56A 3M8YA 1KHKA 2W5RA 3A52A 4KAYA 1E3CP 2QZUA 3KD8A 4UPIA 3NKOA 5DLTA 3ED4A 3SZZA 1HJKA 1EI6A 3UO0A 3NKPA 5DLVA 5L0EA 3BDFA 2W5TA 4LRBA 4GTZA 2ANHA 1HQAA 2W8SA 3CMRA 4LR7A 3NVLA 4NWXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KJD A;  5L0B A;  3UN3 A;  4LRC A;  5C66 A;  3WAY A;  5L0K A;  4UOR A;  3T02 A;  4CYS A;  1URA A;  4CXK A;  1EJJ A;  3MK2 A;  1O99 A;  2W5Q A;  3E2D A;  1KH9 A;  5AJ9 A;  4MIV A;  4LRE A;  5EGE A;  3MK1 A;  4NWJ A;  3M7V A;  2W5W A;  1SHQ A;  2IFY A;  4LR2 A;  2IUC A;  2VQR A;  3IGZ B;  1K7H A;  2GSO A;  2W8D A;  4FDI A;  4UPK A;  5EGH A;  5KXA A;  1O98 A;  2GSU A;  4LQY A;  1ED9 A;  4KAV A;  1EW2 A;  5HRT A;  3UNY A;  5LRN A;  4FDJ A;  1KH5 A;  3M8Z A;  3Q3Q A;  1ANJ A;  1AUK A;  1ANI A;  4MY4 A;  1URB A;  2W5S A;  4ZG9 A;  3T00 A;  1Y6V A;  4UPL A;  3WAX A;  1ELX A;  3BDH A;  4N7T A;  1ZED A;  4ZG6 A;  2RH6 A;  1EW8 A;  3BDG A;  1E2S P;  2ZKT A;  3TG0 A;  1SHN A;  4UOP A;  1EW9 A;  2IUC B;  1N2L A;  4LR9 A;  1KH4 A;  5GOV A;  4CXS A;  4YR1 A;  3IGY B;  5INH A;  1KHJ A;  3WAW A;  4GTY A;  1KHL A;  3SZY A;  3WBH A;  4KJG A;  3DYC A;  4LRF A;  5TJ3 A;  1ALK A;  3NKR A;  1N2K A;  4GTW A;  1AJB A;  3UN2 A;  4MHX A;  4LR8 A;  1P49 A;  4LRD A;  2XRG A;  5IJS A;  1AJC A;  1EQJ A;  3UN5 A;  5IJQ A;  2GSN A;  2GLQ A;  4ZGA A;  3BDG B;  4LRA A;  3B5Q A;  1Y7A A;  2W5V A;  5LRM A;  2X98 A;  4UOO A;  1ALI A;  1ELZ A;  3M8W A;  1E33 P;  3TWZ A;  2GA3 A;  1B8J A;  4UPH A;  5GRR A;  3IDD A;  1AJD A;  3NKN A;  1KHN A;  2D1G A;  3TX0 A;  1HDH A;  1ELY A;  4TN0 A;  5DLW A;  3T01 A;  1E1Z P;  3NKM A;  2XR9 A;  4ZG7 A;  2G9Y A;  5K4P A;  1AJA A;  3DPC A;  3MK0 A;  1ZEF A;  4CXU A;  3NKQ A;  1KH7 A;  3OT9 A;  1ZEB A;  4GTX A;  4CYR A;  5LQQ A;  1FSU A;  3LXQ A;  3WAV A;  4QAX A;  1ALH A;  1ED8 A;  2W5X A;  4KM4 A;  5LIA A;  1ALJ A;  4B56 A;  3M8Y A;  1KHK A;  2W5R A;  3A52 A;  4KAY A;  1E3C P;  2QZU A;  3KD8 A;  4UPI A;  3NKO A;  5DLT A;  3ED4 A;  3SZZ A;  1HJK A;  1EI6 A;  3UO0 A;  3NKP A;  5DLV A;  5L0E A;  3BDF A;  2W5T A;  4LRB A;  4GTZ A;  2ANH A;  1HQA A;  2W8S A;  3CMR A;  4LR7 A;  3NVL A;  4NWX A; 
#chains in the Genus database with same CATH topology
 4KJD A;  5L0B A;  3UN3 A;  4LRC A;  5C66 A;  3WAY A;  5L0K A;  4UOR A;  3T02 A;  4CYS A;  1URA A;  4CXK A;  1EJJ A;  3MK2 A;  1O99 A;  2W5Q A;  3E2D A;  1KH9 A;  5AJ9 A;  4MIV A;  4LRE A;  5EGE A;  3MK1 A;  4NWJ A;  3M7V A;  2W5W A;  1SHQ A;  2IFY A;  4LR2 A;  2IUC A;  2VQR A;  3IGZ B;  1K7H A;  2GSO A;  2W8D A;  4FDI A;  4UPK A;  5EGH A;  5KXA A;  1O98 A;  2GSU A;  4LQY A;  1ED9 A;  4KAV A;  1EW2 A;  5HRT A;  3UNY A;  5LRN A;  4FDJ A;  1KH5 A;  3M8Z A;  3Q3Q A;  1ANJ A;  1AUK A;  1ANI A;  4MY4 A;  1URB A;  2W5S A;  4ZG9 A;  3T00 A;  1Y6V A;  4UPL A;  3WAX A;  1ELX A;  3BDH A;  4N7T A;  1ZED A;  4ZG6 A;  2RH6 A;  1EW8 A;  3BDG A;  1E2S P;  2ZKT A;  3TG0 A;  1SHN A;  4UOP A;  1EW9 A;  2IUC B;  1N2L A;  4LR9 A;  1KH4 A;  5GOV A;  4CXS A;  4YR1 A;  3IGY B;  5INH A;  1KHJ A;  3WAW A;  4GTY A;  1KHL A;  3SZY A;  3WBH A;  4KJG A;  3DYC A;  4LRF A;  5TJ3 A;  1ALK A;  3NKR A;  1N2K A;  4GTW A;  1AJB A;  3UN2 A;  4MHX A;  4LR8 A;  1P49 A;  4LRD A;  2XRG A;  5IJS A;  1AJC A;  1EQJ A;  3UN5 A;  5IJQ A;  2GSN A;  2GLQ A;  4ZGA A;  3BDG B;  4LRA A;  3B5Q A;  1Y7A A;  2W5V A;  5LRM A;  2X98 A;  4UOO A;  1ALI A;  1ELZ A;  3M8W A;  1E33 P;  3TWZ A;  2GA3 A;  1B8J A;  4UPH A;  5GRR A;  3IDD A;  1AJD A;  3NKN A;  1KHN A;  2D1G A;  3TX0 A;  1HDH A;  1ELY A;  4TN0 A;  5DLW A;  3T01 A;  1E1Z P;  3NKM A;  2XR9 A;  4ZG7 A;  2G9Y A;  5K4P A;  1AJA A;  3DPC A;  3MK0 A;  1ZEF A;  4CXU A;  3NKQ A;  1KH7 A;  3OT9 A;  1ZEB A;  4GTX A;  4CYR A;  5LQQ A;  1FSU A;  3LXQ A;  3WAV A;  4QAX A;  1ALH A;  1ED8 A;  2W5X A;  4KM4 A;  5LIA A;  1ALJ A;  4B56 A;  3M8Y A;  1KHK A;  2W5R A;  3A52 A;  4KAY A;  1E3C P;  2QZU A;  3KD8 A;  4UPI A;  3NKO A;  5DLT A;  3ED4 A;  3SZZ A;  1HJK A;  1EI6 A;  3UO0 A;  3NKP A;  5DLV A;  5L0E A;  3BDF A;  2W5T A;  4LRB A;  4GTZ A;  2ANH A;  1HQA A;  2W8S A;  3CMR A;  4LR7 A;  3NVL A;  4NWX A; 
#chains in the Genus database with same CATH homology
 4KJD A;  5L0B A;  3UN3 A;  4LRC A;  5C66 A;  3WAY A;  5L0K A;  4UOR A;  3T02 A;  4CYS A;  1URA A;  4CXK A;  1EJJ A;  3MK2 A;  1O99 A;  2W5Q A;  3E2D A;  1KH9 A;  5AJ9 A;  4MIV A;  4LRE A;  5EGE A;  3MK1 A;  4NWJ A;  3M7V A;  2W5W A;  1SHQ A;  2IFY A;  4LR2 A;  2IUC A;  2VQR A;  3IGZ B;  1K7H A;  2GSO A;  2W8D A;  4FDI A;  4UPK A;  5EGH A;  5KXA A;  1O98 A;  2GSU A;  4LQY A;  1ED9 A;  4KAV A;  1EW2 A;  5HRT A;  3UNY A;  5LRN A;  4FDJ A;  1KH5 A;  3M8Z A;  3Q3Q A;  1ANJ A;  1AUK A;  1ANI A;  4MY4 A;  1URB A;  2W5S A;  4ZG9 A;  3T00 A;  1Y6V A;  4UPL A;  3WAX A;  1ELX A;  3BDH A;  4N7T A;  1ZED A;  4ZG6 A;  2RH6 A;  1EW8 A;  3BDG A;  1E2S P;  2ZKT A;  3TG0 A;  1SHN A;  4UOP A;  1EW9 A;  2IUC B;  1N2L A;  4LR9 A;  1KH4 A;  5GOV A;  4CXS A;  4YR1 A;  3IGY B;  5INH A;  1KHJ A;  3WAW A;  4GTY A;  1KHL A;  3SZY A;  3WBH A;  4KJG A;  3DYC A;  4LRF A;  5TJ3 A;  1ALK A;  3NKR A;  1N2K A;  4GTW A;  1AJB A;  3UN2 A;  4MHX A;  4LR8 A;  1P49 A;  4LRD A;  2XRG A;  5IJS A;  1AJC A;  1EQJ A;  3UN5 A;  5IJQ A;  2GSN A;  2GLQ A;  4ZGA A;  3BDG B;  4LRA A;  3B5Q A;  1Y7A A;  2W5V A;  5LRM A;  2X98 A;  4UOO A;  1ALI A;  1ELZ A;  3M8W A;  1E33 P;  3TWZ A;  2GA3 A;  1B8J A;  4UPH A;  5GRR A;  3IDD A;  1AJD A;  3NKN A;  1KHN A;  2D1G A;  3TX0 A;  1HDH A;  1ELY A;  4TN0 A;  5DLW A;  3T01 A;  1E1Z P;  3NKM A;  2XR9 A;  4ZG7 A;  2G9Y A;  5K4P A;  1AJA A;  3DPC A;  3MK0 A;  1ZEF A;  4CXU A;  3NKQ A;  1KH7 A;  3OT9 A;  1ZEB A;  4GTX A;  4CYR A;  5LQQ A;  1FSU A;  3LXQ A;  3WAV A;  4QAX A;  1ALH A;  1ED8 A;  2W5X A;  4KM4 A;  5LIA A;  1ALJ A;  4B56 A;  3M8Y A;  1KHK A;  2W5R A;  3A52 A;  4KAY A;  1E3C P;  2QZU A;  3KD8 A;  4UPI A;  3NKO A;  5DLT A;  3ED4 A;  3SZZ A;  1HJK A;  1EI6 A;  3UO0 A;  3NKP A;  5DLV A;  5L0E A;  3BDF A;  2W5T A;  4LRB A;  4GTZ A;  2ANH A;  1HQA A;  2W8S A;  3CMR A;  4LR7 A;  3NVL A;  4NWX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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