2W5QA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 167
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5qA02
3M8ZA 4FDJA 4ZGAA 4YR1A 1URBA 4KAVA 4ZG6A 2W5VA 2W8DA 1ED9A 1SHQA 4GTXA 2ZKTA 4UORA 2XRGA 1ED8A 2W5QA 1ZEBA 4LR8A 2RH6A 5IJQA 1ANIA 3IDDA 3NVLA 2W5SA 3DPCA 1O98A 3UN5A 2GLQA 5GRRA 4LRFA 1KH9A 4MHXA 1O99A 3Q3QA 4GTWA 3MK1A 1P49A 4ZG7A 1N2LA 1SHNA 1N2KA 4CXUA 5KXAA 3SZYA 4UOOA 5K4PA 4NWXA 1ELZA 3UN3A 4QAXA 1EW8A 2ANHA 3NKRA 1Y7AA 3BDFA 1KHNA 1E2SP 1KH7A 1Y6VA 1K7HA 3WAVA 4KJDA 5LIAA 5GOVA 2GSOA 2W5RA 4GTYA 2GSNA 1KHLA 1KH5A 2G9YA 4UOPA 2IFYA 5L0BA 3IGZB 1EW2A 3E2DA 4LRAA 1URAA 4ZG9A 3TG0A 3WAWA 3NKNA 3WAXA 3UNYA 5HRTA 4KAYA 4CYSA 5LQQA 4UPHA 5L0EA 1B8JA 2W5TA 5L0KA 4FDIA 2W8SA 1FSUA 2IUCA 4LR2A 3ED4A 3NKMA 1ALHA 3T02A 2QZUA 1HQAA 5C66A 5DLWA 4KM4A 4N7TA 1ELYA 4LR7A 4NWJA 3LXQA 2W5XA 5EGEA 3CMRA 2XR9A 1EW9A 1KHKA 3A52A 4UPIA 1AJDA 5AJ9A 1ANJA 4LRBA 2GA3A 4LREA 3SZZA 4TN0A 1E3CP 1E1ZP 3WBHA 2GSUA 3MK0A 5EGHA 1AUKA 1ELXA 4CXKA 4CYRA 1ALIA 1AJCA 1ZEDA 4B56A 4UPLA 3NKQA 1KHJA 4LQYA 2IUCB 4LRCA 4MY4A 1HDHA 3B5QA 3UO0A 5DLTA 3M7VA 4LR9A 1ZEFA 1EQJA 4GTZA 5DLVA 5INHA 3WAYA 1EJJA 1E33P 3DYCA 3T00A 3MK2A 1KH4A 3NKPA 4KJGA 3T01A 1AJBA 3M8YA 5IJSA 3BDGB 4MIVA 1ALKA 3OT9A 5LRMA 2VQRA 1EI6A 3UN2A 3BDGA 1AJAA 4UPKA 1ALJA 3KD8A 2W5WA 4CXSA 2D1GA 5TJ3A 3TWZA 3NKOA 2X98A 3BDHA 3IGYB 4LRDA 5LRNA 3M8WA 3TX0A 1HJKA
chains in the Genus database with same CATH superfamily
3M8ZA 4FDJA 4ZGAA 4YR1A 1URBA 4KAVA 4ZG6A 2W5VA 2W8DA 1ED9A 1SHQA 4GTXA 2ZKTA 4UORA 2XRGA 1ED8A 2W5QA 1ZEBA 4LR8A 2RH6A 5IJQA 1ANIA 3IDDA 3NVLA 2W5SA 3DPCA 1O98A 3UN5A 2GLQA 5GRRA 4LRFA 1KH9A 4MHXA 1O99A 3Q3QA 4GTWA 3MK1A 1P49A 4ZG7A 1N2LA 1SHNA 1N2KA 4CXUA 5KXAA 3SZYA 4UOOA 5K4PA 4NWXA 1ELZA 3UN3A 4QAXA 1EW8A 2ANHA 3NKRA 1Y7AA 3BDFA 1KHNA 1E2SP 1KH7A 1Y6VA 1K7HA 3WAVA 4KJDA 5LIAA 5GOVA 2GSOA 2W5RA 4GTYA 2GSNA 1KHLA 1KH5A 2G9YA 4UOPA 2IFYA 5L0BA 3IGZB 1EW2A 3E2DA 4LRAA 1URAA 4ZG9A 3TG0A 3WAWA 3NKNA 3WAXA 3UNYA 5HRTA 4KAYA 4CYSA 5LQQA 4UPHA 5L0EA 1B8JA 2W5TA 5L0KA 4FDIA 2W8SA 1FSUA 2IUCA 4LR2A 3ED4A 3NKMA 1ALHA 3T02A 2QZUA 1HQAA 5C66A 5DLWA 4KM4A 4N7TA 1ELYA 4LR7A 4NWJA 3LXQA 2W5XA 5EGEA 3CMRA 2XR9A 1EW9A 1KHKA 3A52A 4UPIA 1AJDA 5AJ9A 1ANJA 4LRBA 2GA3A 4LREA 3SZZA 4TN0A 1E3CP 1E1ZP 3WBHA 2GSUA 3MK0A 5EGHA 1AUKA 1ELXA 4CXKA 4CYRA 1ALIA 1AJCA 1ZEDA 4B56A 4UPLA 3NKQA 1KHJA 4LQYA 2IUCB 4LRCA 4MY4A 1HDHA 3B5QA 3UO0A 5DLTA 3M7VA 4LR9A 1ZEFA 1EQJA 4GTZA 5DLVA 5INHA 3WAYA 1EJJA 1E33P 3DYCA 3T00A 3MK2A 1KH4A 3NKPA 4KJGA 3T01A 1AJBA 3M8YA 5IJSA 3BDGB 4MIVA 1ALKA 3OT9A 5LRMA 2VQRA 1EI6A 3UN2A 3BDGA 1AJAA 4UPKA 1ALJA 3KD8A 2W5WA 4CXSA 2D1GA 5TJ3A 3TWZA 3NKOA 2X98A 3BDHA 3IGYB 4LRDA 5LRNA 3M8WA 3TX0A 1HJKA
chains in the Genus database with same CATH topology
3M8ZA 4FDJA 4ZGAA 4YR1A 1URBA 4KAVA 4ZG6A 2W5VA 2W8DA 1ED9A 1SHQA 4GTXA 2ZKTA 4UORA 2XRGA 1ED8A 2W5QA 1ZEBA 4LR8A 2RH6A 5IJQA 1ANIA 3IDDA 3NVLA 2W5SA 3DPCA 1O98A 3UN5A 2GLQA 5GRRA 4LRFA 1KH9A 4MHXA 1O99A 3Q3QA 4GTWA 3MK1A 1P49A 4ZG7A 1N2LA 1SHNA 1N2KA 4CXUA 5KXAA 3SZYA 4UOOA 5K4PA 4NWXA 1ELZA 3UN3A 4QAXA 1EW8A 2ANHA 3NKRA 1Y7AA 3BDFA 1KHNA 1E2SP 1KH7A 1Y6VA 1K7HA 3WAVA 4KJDA 5LIAA 5GOVA 2GSOA 2W5RA 4GTYA 2GSNA 1KHLA 1KH5A 2G9YA 4UOPA 2IFYA 5L0BA 3IGZB 1EW2A 3E2DA 4LRAA 1URAA 4ZG9A 3TG0A 3WAWA 3NKNA 3WAXA 3UNYA 5HRTA 4KAYA 4CYSA 5LQQA 4UPHA 5L0EA 1B8JA 2W5TA 5L0KA 4FDIA 2W8SA 1FSUA 2IUCA 4LR2A 3ED4A 3NKMA 1ALHA 3T02A 2QZUA 1HQAA 5C66A 5DLWA 4KM4A 4N7TA 1ELYA 4LR7A 4NWJA 3LXQA 2W5XA 5EGEA 3CMRA 2XR9A 1EW9A 1KHKA 3A52A 4UPIA 1AJDA 5AJ9A 1ANJA 4LRBA 2GA3A 4LREA 3SZZA 4TN0A 1E3CP 1E1ZP 3WBHA 2GSUA 3MK0A 5EGHA 1AUKA 1ELXA 4CXKA 4CYRA 1ALIA 1AJCA 1ZEDA 4B56A 4UPLA 3NKQA 1KHJA 4LQYA 2IUCB 4LRCA 4MY4A 1HDHA 3B5QA 3UO0A 5DLTA 3M7VA 4LR9A 1ZEFA 1EQJA 4GTZA 5DLVA 5INHA 3WAYA 1EJJA 1E33P 3DYCA 3T00A 3MK2A 1KH4A 3NKPA 4KJGA 3T01A 1AJBA 3M8YA 5IJSA 3BDGB 4MIVA 1ALKA 3OT9A 5LRMA 2VQRA 1EI6A 3UN2A 3BDGA 1AJAA 4UPKA 1ALJA 3KD8A 2W5WA 4CXSA 2D1GA 5TJ3A 3TWZA 3NKOA 2X98A 3BDHA 3IGYB 4LRDA 5LRNA 3M8WA 3TX0A 1HJKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M8Z A;  4FDJ A;  4ZGA A;  4YR1 A;  1URB A;  4KAV A;  4ZG6 A;  2W5V A;  2W8D A;  1ED9 A;  1SHQ A;  4GTX A;  2ZKT A;  4UOR A;  2XRG A;  1ED8 A;  2W5Q A;  1ZEB A;  4LR8 A;  2RH6 A;  5IJQ A;  1ANI A;  3IDD A;  3NVL A;  2W5S A;  3DPC A;  1O98 A;  3UN5 A;  2GLQ A;  5GRR A;  4LRF A;  1KH9 A;  4MHX A;  1O99 A;  3Q3Q A;  4GTW A;  3MK1 A;  1P49 A;  4ZG7 A;  1N2L A;  1SHN A;  1N2K A;  4CXU A;  5KXA A;  3SZY A;  4UOO A;  5K4P A;  4NWX A;  1ELZ A;  3UN3 A;  4QAX A;  1EW8 A;  2ANH A;  3NKR A;  1Y7A A;  3BDF A;  1KHN A;  1E2S P;  1KH7 A;  1Y6V A;  1K7H A;  3WAV A;  4KJD A;  5LIA A;  5GOV A;  2GSO A;  2W5R A;  4GTY A;  2GSN A;  1KHL A;  1KH5 A;  2G9Y A;  4UOP A;  2IFY A;  5L0B A;  3IGZ B;  1EW2 A;  3E2D A;  4LRA A;  1URA A;  4ZG9 A;  3TG0 A;  3WAW A;  3NKN A;  3WAX A;  3UNY A;  5HRT A;  4KAY A;  4CYS A;  5LQQ A;  4UPH A;  5L0E A;  1B8J A;  2W5T A;  5L0K A;  4FDI A;  2W8S A;  1FSU A;  2IUC A;  4LR2 A;  3ED4 A;  3NKM A;  1ALH A;  3T02 A;  2QZU A;  1HQA A;  5C66 A;  5DLW A;  4KM4 A;  4N7T A;  1ELY A;  4LR7 A;  4NWJ A;  3LXQ A;  2W5X A;  5EGE A;  3CMR A;  2XR9 A;  1EW9 A;  1KHK A;  3A52 A;  4UPI A;  1AJD A;  5AJ9 A;  1ANJ A;  4LRB A;  2GA3 A;  4LRE A;  3SZZ A;  4TN0 A;  1E3C P;  1E1Z P;  3WBH A;  2GSU A;  3MK0 A;  5EGH A;  1AUK A;  1ELX A;  4CXK A;  4CYR A;  1ALI A;  1AJC A;  1ZED A;  4B56 A;  4UPL A;  3NKQ A;  1KHJ A;  4LQY A;  2IUC B;  4LRC A;  4MY4 A;  1HDH A;  3B5Q A;  3UO0 A;  5DLT A;  3M7V A;  4LR9 A;  1ZEF A;  1EQJ A;  4GTZ A;  5DLV A;  5INH A;  3WAY A;  1EJJ A;  1E33 P;  3DYC A;  3T00 A;  3MK2 A;  1KH4 A;  3NKP A;  4KJG A;  3T01 A;  1AJB A;  3M8Y A;  5IJS A;  3BDG B;  4MIV A;  1ALK A;  3OT9 A;  5LRM A;  2VQR A;  1EI6 A;  3UN2 A;  3BDG A;  1AJA A;  4UPK A;  1ALJ A;  3KD8 A;  2W5W A;  4CXS A;  2D1G A;  5TJ3 A;  3TWZ A;  3NKO A;  2X98 A;  3BDH A;  3IGY B;  4LRD A;  5LRN A;  3M8W A;  3TX0 A;  1HJK A; 
#chains in the Genus database with same CATH topology
 3M8Z A;  4FDJ A;  4ZGA A;  4YR1 A;  1URB A;  4KAV A;  4ZG6 A;  2W5V A;  2W8D A;  1ED9 A;  1SHQ A;  4GTX A;  2ZKT A;  4UOR A;  2XRG A;  1ED8 A;  2W5Q A;  1ZEB A;  4LR8 A;  2RH6 A;  5IJQ A;  1ANI A;  3IDD A;  3NVL A;  2W5S A;  3DPC A;  1O98 A;  3UN5 A;  2GLQ A;  5GRR A;  4LRF A;  1KH9 A;  4MHX A;  1O99 A;  3Q3Q A;  4GTW A;  3MK1 A;  1P49 A;  4ZG7 A;  1N2L A;  1SHN A;  1N2K A;  4CXU A;  5KXA A;  3SZY A;  4UOO A;  5K4P A;  4NWX A;  1ELZ A;  3UN3 A;  4QAX A;  1EW8 A;  2ANH A;  3NKR A;  1Y7A A;  3BDF A;  1KHN A;  1E2S P;  1KH7 A;  1Y6V A;  1K7H A;  3WAV A;  4KJD A;  5LIA A;  5GOV A;  2GSO A;  2W5R A;  4GTY A;  2GSN A;  1KHL A;  1KH5 A;  2G9Y A;  4UOP A;  2IFY A;  5L0B A;  3IGZ B;  1EW2 A;  3E2D A;  4LRA A;  1URA A;  4ZG9 A;  3TG0 A;  3WAW A;  3NKN A;  3WAX A;  3UNY A;  5HRT A;  4KAY A;  4CYS A;  5LQQ A;  4UPH A;  5L0E A;  1B8J A;  2W5T A;  5L0K A;  4FDI A;  2W8S A;  1FSU A;  2IUC A;  4LR2 A;  3ED4 A;  3NKM A;  1ALH A;  3T02 A;  2QZU A;  1HQA A;  5C66 A;  5DLW A;  4KM4 A;  4N7T A;  1ELY A;  4LR7 A;  4NWJ A;  3LXQ A;  2W5X A;  5EGE A;  3CMR A;  2XR9 A;  1EW9 A;  1KHK A;  3A52 A;  4UPI A;  1AJD A;  5AJ9 A;  1ANJ A;  4LRB A;  2GA3 A;  4LRE A;  3SZZ A;  4TN0 A;  1E3C P;  1E1Z P;  3WBH A;  2GSU A;  3MK0 A;  5EGH A;  1AUK A;  1ELX A;  4CXK A;  4CYR A;  1ALI A;  1AJC A;  1ZED A;  4B56 A;  4UPL A;  3NKQ A;  1KHJ A;  4LQY A;  2IUC B;  4LRC A;  4MY4 A;  1HDH A;  3B5Q A;  3UO0 A;  5DLT A;  3M7V A;  4LR9 A;  1ZEF A;  1EQJ A;  4GTZ A;  5DLV A;  5INH A;  3WAY A;  1EJJ A;  1E33 P;  3DYC A;  3T00 A;  3MK2 A;  1KH4 A;  3NKP A;  4KJG A;  3T01 A;  1AJB A;  3M8Y A;  5IJS A;  3BDG B;  4MIV A;  1ALK A;  3OT9 A;  5LRM A;  2VQR A;  1EI6 A;  3UN2 A;  3BDG A;  1AJA A;  4UPK A;  1ALJ A;  3KD8 A;  2W5W A;  4CXS A;  2D1G A;  5TJ3 A;  3TWZ A;  3NKO A;  2X98 A;  3BDH A;  3IGY B;  4LRD A;  5LRN A;  3M8W A;  3TX0 A;  1HJK A; 
#chains in the Genus database with same CATH homology
 3M8Z A;  4FDJ A;  4ZGA A;  4YR1 A;  1URB A;  4KAV A;  4ZG6 A;  2W5V A;  2W8D A;  1ED9 A;  1SHQ A;  4GTX A;  2ZKT A;  4UOR A;  2XRG A;  1ED8 A;  2W5Q A;  1ZEB A;  4LR8 A;  2RH6 A;  5IJQ A;  1ANI A;  3IDD A;  3NVL A;  2W5S A;  3DPC A;  1O98 A;  3UN5 A;  2GLQ A;  5GRR A;  4LRF A;  1KH9 A;  4MHX A;  1O99 A;  3Q3Q A;  4GTW A;  3MK1 A;  1P49 A;  4ZG7 A;  1N2L A;  1SHN A;  1N2K A;  4CXU A;  5KXA A;  3SZY A;  4UOO A;  5K4P A;  4NWX A;  1ELZ A;  3UN3 A;  4QAX A;  1EW8 A;  2ANH A;  3NKR A;  1Y7A A;  3BDF A;  1KHN A;  1E2S P;  1KH7 A;  1Y6V A;  1K7H A;  3WAV A;  4KJD A;  5LIA A;  5GOV A;  2GSO A;  2W5R A;  4GTY A;  2GSN A;  1KHL A;  1KH5 A;  2G9Y A;  4UOP A;  2IFY A;  5L0B A;  3IGZ B;  1EW2 A;  3E2D A;  4LRA A;  1URA A;  4ZG9 A;  3TG0 A;  3WAW A;  3NKN A;  3WAX A;  3UNY A;  5HRT A;  4KAY A;  4CYS A;  5LQQ A;  4UPH A;  5L0E A;  1B8J A;  2W5T A;  5L0K A;  4FDI A;  2W8S A;  1FSU A;  2IUC A;  4LR2 A;  3ED4 A;  3NKM A;  1ALH A;  3T02 A;  2QZU A;  1HQA A;  5C66 A;  5DLW A;  4KM4 A;  4N7T A;  1ELY A;  4LR7 A;  4NWJ A;  3LXQ A;  2W5X A;  5EGE A;  3CMR A;  2XR9 A;  1EW9 A;  1KHK A;  3A52 A;  4UPI A;  1AJD A;  5AJ9 A;  1ANJ A;  4LRB A;  2GA3 A;  4LRE A;  3SZZ A;  4TN0 A;  1E3C P;  1E1Z P;  3WBH A;  2GSU A;  3MK0 A;  5EGH A;  1AUK A;  1ELX A;  4CXK A;  4CYR A;  1ALI A;  1AJC A;  1ZED A;  4B56 A;  4UPL A;  3NKQ A;  1KHJ A;  4LQY A;  2IUC B;  4LRC A;  4MY4 A;  1HDH A;  3B5Q A;  3UO0 A;  5DLT A;  3M7V A;  4LR9 A;  1ZEF A;  1EQJ A;  4GTZ A;  5DLV A;  5INH A;  3WAY A;  1EJJ A;  1E33 P;  3DYC A;  3T00 A;  3MK2 A;  1KH4 A;  3NKP A;  4KJG A;  3T01 A;  1AJB A;  3M8Y A;  5IJS A;  3BDG B;  4MIV A;  1ALK A;  3OT9 A;  5LRM A;  2VQR A;  1EI6 A;  3UN2 A;  3BDG A;  1AJA A;  4UPK A;  1ALJ A;  3KD8 A;  2W5W A;  4CXS A;  2D1G A;  5TJ3 A;  3TWZ A;  3NKO A;  2X98 A;  3BDH A;  3IGY B;  4LRD A;  5LRN A;  3M8W A;  3TX0 A;  1HJK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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