2W5QA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Staphylococcus aureus
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
total genus 167
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5qA02
3OT9A 3B5QA 3T00A 3TWZA 1EW2A 1E33P 2IFYA 5GRRA 5L0EA 1E3CP 3MK1A 1O99A 1KHJA 4LRDA 3UN2A 5C66A 5DLWA 4MY4A 3KD8A 1ELXA 3IDDA 5INHA 4B56A 1AJCA 1KHKA 4KAYA 4GTZA 4LR9A 3M8ZA 4MIVA 5DLVA 4KJDA 3MK2A 4UOPA 2IUCA 1P49A 1KHNA 3NKNA 3UN3A 1KH4A 3MK0A 5EGHA 4ZG7A 2D1GA 3A52A 3ED4A 5HRTA 4N7TA 3NKMA 1ZEFA 3DPCA 3E2DA 2GSUA 4GTXA 1AUKA 1EW9A 3LXQA 2ZKTA 4LR2A 1Y6VA 2ANHA 4LQYA 1HJKA 1ELYA 2XRGA 3BDHA 1O98A 4LRAA 5LRNA 4FDIA 1B8JA 3BDGB 1KHLA 1E1ZP 3TX0A 1KH5A 2W8SA 1URAA 3M8WA 1EW8A 3IGZB 4KM4A 3UN5A 2GSNA 1N2LA 4UOOA 2GA3A 3M8YA 3WAXA 1HDHA 1AJAA 2W5RA 1EJJA 2QZUA 3SZZA 4LREA 5GOVA 1N2KA 4UPIA 5IJSA 1SHQA 2W5VA 4TN0A 4NWJA 4CXKA 4NWXA 1ALIA 4QAXA 3NKOA 3TG0A 2XR9A 1AJBA 2IUCB 4GTYA 5L0KA 5AJ9A 3NKQA 4CYRA 4YR1A 3WAVA 3BDFA 4UORA 1ZEBA 4LRBA 5EGEA 1KH7A 4KAVA 4CXUA 5TJ3A 3T01A 5DLTA 4FDJA 3T02A 2W5SA 3NKPA 1FSUA 2W5WA 5IJQA 2W5XA 1Y7AA 1KH9A 4ZG6A 3BDGA 1ALJA 1EI6A 4LRCA 4UPHA 5L0BA 5K4PA 3WAYA 2GSOA 1ELZA 3M7VA 3UO0A 5LQQA 4ZG9A 1ZEDA 4MHXA 3SZYA 3WAWA 1ED9A 1ANJA 5KXAA 4CXSA 3NKRA 4LRFA 4LR8A 1ANIA 1ED8A 2X98A 4LR7A 2G9YA 3UNYA 1E2SP 1URBA 1SHNA 4UPKA 4GTWA 3Q3QA 3NVLA 2GLQA 5LIAA 2W8DA 4CYSA 3CMRA 3WBHA 3DYCA 4UPLA 4ZGAA 1EQJA 4KJGA 2VQRA 2W5QA 3IGYB 1ALKA 1ALHA 1AJDA 1HQAA 1K7HA 5LRMA 2RH6A 2W5TA
chains in the Genus database with same CATH superfamily
3OT9A 3B5QA 3T00A 3TWZA 1EW2A 1E33P 2IFYA 5GRRA 5L0EA 1E3CP 3MK1A 1O99A 1KHJA 4LRDA 3UN2A 5C66A 5DLWA 4MY4A 3KD8A 1ELXA 3IDDA 5INHA 4B56A 1AJCA 1KHKA 4KAYA 4GTZA 4LR9A 3M8ZA 4MIVA 5DLVA 4KJDA 3MK2A 4UOPA 2IUCA 1P49A 1KHNA 3NKNA 3UN3A 1KH4A 3MK0A 5EGHA 4ZG7A 2D1GA 3A52A 3ED4A 5HRTA 4N7TA 3NKMA 1ZEFA 3DPCA 3E2DA 2GSUA 4GTXA 1AUKA 1EW9A 3LXQA 2ZKTA 4LR2A 1Y6VA 2ANHA 4LQYA 1HJKA 1ELYA 2XRGA 3BDHA 1O98A 4LRAA 5LRNA 4FDIA 1B8JA 3BDGB 1KHLA 1E1ZP 3TX0A 1KH5A 2W8SA 1URAA 3M8WA 1EW8A 3IGZB 4KM4A 3UN5A 2GSNA 1N2LA 4UOOA 2GA3A 3M8YA 3WAXA 1HDHA 1AJAA 2W5RA 1EJJA 2QZUA 3SZZA 4LREA 5GOVA 1N2KA 4UPIA 5IJSA 1SHQA 2W5VA 4TN0A 4NWJA 4CXKA 4NWXA 1ALIA 4QAXA 3NKOA 3TG0A 2XR9A 1AJBA 2IUCB 4GTYA 5L0KA 5AJ9A 3NKQA 4CYRA 4YR1A 3WAVA 3BDFA 4UORA 1ZEBA 4LRBA 5EGEA 1KH7A 4KAVA 4CXUA 5TJ3A 3T01A 5DLTA 4FDJA 3T02A 2W5SA 3NKPA 1FSUA 2W5WA 5IJQA 2W5XA 1Y7AA 1KH9A 4ZG6A 3BDGA 1ALJA 1EI6A 4LRCA 4UPHA 5L0BA 5K4PA 3WAYA 2GSOA 1ELZA 3M7VA 3UO0A 5LQQA 4ZG9A 1ZEDA 4MHXA 3SZYA 3WAWA 1ED9A 1ANJA 5KXAA 4CXSA 3NKRA 4LRFA 4LR8A 1ANIA 1ED8A 2X98A 4LR7A 2G9YA 3UNYA 1E2SP 1URBA 1SHNA 4UPKA 4GTWA 3Q3QA 3NVLA 2GLQA 5LIAA 2W8DA 4CYSA 3CMRA 3WBHA 3DYCA 4UPLA 4ZGAA 1EQJA 4KJGA 2VQRA 2W5QA 3IGYB 1ALKA 1ALHA 1AJDA 1HQAA 1K7HA 5LRMA 2RH6A 2W5TA
chains in the Genus database with same CATH topology
3OT9A 3B5QA 3T00A 3TWZA 1EW2A 1E33P 2IFYA 5GRRA 5L0EA 1E3CP 3MK1A 1O99A 1KHJA 4LRDA 3UN2A 5C66A 5DLWA 4MY4A 3KD8A 1ELXA 3IDDA 5INHA 4B56A 1AJCA 1KHKA 4KAYA 4GTZA 4LR9A 3M8ZA 4MIVA 5DLVA 4KJDA 3MK2A 4UOPA 2IUCA 1P49A 1KHNA 3NKNA 3UN3A 1KH4A 3MK0A 5EGHA 4ZG7A 2D1GA 3A52A 3ED4A 5HRTA 4N7TA 3NKMA 1ZEFA 3DPCA 3E2DA 2GSUA 4GTXA 1AUKA 1EW9A 3LXQA 2ZKTA 4LR2A 1Y6VA 2ANHA 4LQYA 1HJKA 1ELYA 2XRGA 3BDHA 1O98A 4LRAA 5LRNA 4FDIA 1B8JA 3BDGB 1KHLA 1E1ZP 3TX0A 1KH5A 2W8SA 1URAA 3M8WA 1EW8A 3IGZB 4KM4A 3UN5A 2GSNA 1N2LA 4UOOA 2GA3A 3M8YA 3WAXA 1HDHA 1AJAA 2W5RA 1EJJA 2QZUA 3SZZA 4LREA 5GOVA 1N2KA 4UPIA 5IJSA 1SHQA 2W5VA 4TN0A 4NWJA 4CXKA 4NWXA 1ALIA 4QAXA 3NKOA 3TG0A 2XR9A 1AJBA 2IUCB 4GTYA 5L0KA 5AJ9A 3NKQA 4CYRA 4YR1A 3WAVA 3BDFA 4UORA 1ZEBA 4LRBA 5EGEA 1KH7A 4KAVA 4CXUA 5TJ3A 3T01A 5DLTA 4FDJA 3T02A 2W5SA 3NKPA 1FSUA 2W5WA 5IJQA 2W5XA 1Y7AA 1KH9A 4ZG6A 3BDGA 1ALJA 1EI6A 4LRCA 4UPHA 5L0BA 5K4PA 3WAYA 2GSOA 1ELZA 3M7VA 3UO0A 5LQQA 4ZG9A 1ZEDA 4MHXA 3SZYA 3WAWA 1ED9A 1ANJA 5KXAA 4CXSA 3NKRA 4LRFA 4LR8A 1ANIA 1ED8A 2X98A 4LR7A 2G9YA 3UNYA 1E2SP 1URBA 1SHNA 4UPKA 4GTWA 3Q3QA 3NVLA 2GLQA 5LIAA 2W8DA 4CYSA 3CMRA 3WBHA 3DYCA 4UPLA 4ZGAA 1EQJA 4KJGA 2VQRA 2W5QA 3IGYB 1ALKA 1ALHA 1AJDA 1HQAA 1K7HA 5LRMA 2RH6A 2W5TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OT9 A;  3B5Q A;  3T00 A;  3TWZ A;  1EW2 A;  1E33 P;  2IFY A;  5GRR A;  5L0E A;  1E3C P;  3MK1 A;  1O99 A;  1KHJ A;  4LRD A;  3UN2 A;  5C66 A;  5DLW A;  4MY4 A;  3KD8 A;  1ELX A;  3IDD A;  5INH A;  4B56 A;  1AJC A;  1KHK A;  4KAY A;  4GTZ A;  4LR9 A;  3M8Z A;  4MIV A;  5DLV A;  4KJD A;  3MK2 A;  4UOP A;  2IUC A;  1P49 A;  1KHN A;  3NKN A;  3UN3 A;  1KH4 A;  3MK0 A;  5EGH A;  4ZG7 A;  2D1G A;  3A52 A;  3ED4 A;  5HRT A;  4N7T A;  3NKM A;  1ZEF A;  3DPC A;  3E2D A;  2GSU A;  4GTX A;  1AUK A;  1EW9 A;  3LXQ A;  2ZKT A;  4LR2 A;  1Y6V A;  2ANH A;  4LQY A;  1HJK A;  1ELY A;  2XRG A;  3BDH A;  1O98 A;  4LRA A;  5LRN A;  4FDI A;  1B8J A;  3BDG B;  1KHL A;  1E1Z P;  3TX0 A;  1KH5 A;  2W8S A;  1URA A;  3M8W A;  1EW8 A;  3IGZ B;  4KM4 A;  3UN5 A;  2GSN A;  1N2L A;  4UOO A;  2GA3 A;  3M8Y A;  3WAX A;  1HDH A;  1AJA A;  2W5R A;  1EJJ A;  2QZU A;  3SZZ A;  4LRE A;  5GOV A;  1N2K A;  4UPI A;  5IJS A;  1SHQ A;  2W5V A;  4TN0 A;  4NWJ A;  4CXK A;  4NWX A;  1ALI A;  4QAX A;  3NKO A;  3TG0 A;  2XR9 A;  1AJB A;  2IUC B;  4GTY A;  5L0K A;  5AJ9 A;  3NKQ A;  4CYR A;  4YR1 A;  3WAV A;  3BDF A;  4UOR A;  1ZEB A;  4LRB A;  5EGE A;  1KH7 A;  4KAV A;  4CXU A;  5TJ3 A;  3T01 A;  5DLT A;  4FDJ A;  3T02 A;  2W5S A;  3NKP A;  1FSU A;  2W5W A;  5IJQ A;  2W5X A;  1Y7A A;  1KH9 A;  4ZG6 A;  3BDG A;  1ALJ A;  1EI6 A;  4LRC A;  4UPH A;  5L0B A;  5K4P A;  3WAY A;  2GSO A;  1ELZ A;  3M7V A;  3UO0 A;  5LQQ A;  4ZG9 A;  1ZED A;  4MHX A;  3SZY A;  3WAW A;  1ED9 A;  1ANJ A;  5KXA A;  4CXS A;  3NKR A;  4LRF A;  4LR8 A;  1ANI A;  1ED8 A;  2X98 A;  4LR7 A;  2G9Y A;  3UNY A;  1E2S P;  1URB A;  1SHN A;  4UPK A;  4GTW A;  3Q3Q A;  3NVL A;  2GLQ A;  5LIA A;  2W8D A;  4CYS A;  3CMR A;  3WBH A;  3DYC A;  4UPL A;  4ZGA A;  1EQJ A;  4KJG A;  2VQR A;  2W5Q A;  3IGY B;  1ALK A;  1ALH A;  1AJD A;  1HQA A;  1K7H A;  5LRM A;  2RH6 A;  2W5T A; 
#chains in the Genus database with same CATH topology
 3OT9 A;  3B5Q A;  3T00 A;  3TWZ A;  1EW2 A;  1E33 P;  2IFY A;  5GRR A;  5L0E A;  1E3C P;  3MK1 A;  1O99 A;  1KHJ A;  4LRD A;  3UN2 A;  5C66 A;  5DLW A;  4MY4 A;  3KD8 A;  1ELX A;  3IDD A;  5INH A;  4B56 A;  1AJC A;  1KHK A;  4KAY A;  4GTZ A;  4LR9 A;  3M8Z A;  4MIV A;  5DLV A;  4KJD A;  3MK2 A;  4UOP A;  2IUC A;  1P49 A;  1KHN A;  3NKN A;  3UN3 A;  1KH4 A;  3MK0 A;  5EGH A;  4ZG7 A;  2D1G A;  3A52 A;  3ED4 A;  5HRT A;  4N7T A;  3NKM A;  1ZEF A;  3DPC A;  3E2D A;  2GSU A;  4GTX A;  1AUK A;  1EW9 A;  3LXQ A;  2ZKT A;  4LR2 A;  1Y6V A;  2ANH A;  4LQY A;  1HJK A;  1ELY A;  2XRG A;  3BDH A;  1O98 A;  4LRA A;  5LRN A;  4FDI A;  1B8J A;  3BDG B;  1KHL A;  1E1Z P;  3TX0 A;  1KH5 A;  2W8S A;  1URA A;  3M8W A;  1EW8 A;  3IGZ B;  4KM4 A;  3UN5 A;  2GSN A;  1N2L A;  4UOO A;  2GA3 A;  3M8Y A;  3WAX A;  1HDH A;  1AJA A;  2W5R A;  1EJJ A;  2QZU A;  3SZZ A;  4LRE A;  5GOV A;  1N2K A;  4UPI A;  5IJS A;  1SHQ A;  2W5V A;  4TN0 A;  4NWJ A;  4CXK A;  4NWX A;  1ALI A;  4QAX A;  3NKO A;  3TG0 A;  2XR9 A;  1AJB A;  2IUC B;  4GTY A;  5L0K A;  5AJ9 A;  3NKQ A;  4CYR A;  4YR1 A;  3WAV A;  3BDF A;  4UOR A;  1ZEB A;  4LRB A;  5EGE A;  1KH7 A;  4KAV A;  4CXU A;  5TJ3 A;  3T01 A;  5DLT A;  4FDJ A;  3T02 A;  2W5S A;  3NKP A;  1FSU A;  2W5W A;  5IJQ A;  2W5X A;  1Y7A A;  1KH9 A;  4ZG6 A;  3BDG A;  1ALJ A;  1EI6 A;  4LRC A;  4UPH A;  5L0B A;  5K4P A;  3WAY A;  2GSO A;  1ELZ A;  3M7V A;  3UO0 A;  5LQQ A;  4ZG9 A;  1ZED A;  4MHX A;  3SZY A;  3WAW A;  1ED9 A;  1ANJ A;  5KXA A;  4CXS A;  3NKR A;  4LRF A;  4LR8 A;  1ANI A;  1ED8 A;  2X98 A;  4LR7 A;  2G9Y A;  3UNY A;  1E2S P;  1URB A;  1SHN A;  4UPK A;  4GTW A;  3Q3Q A;  3NVL A;  2GLQ A;  5LIA A;  2W8D A;  4CYS A;  3CMR A;  3WBH A;  3DYC A;  4UPL A;  4ZGA A;  1EQJ A;  4KJG A;  2VQR A;  2W5Q A;  3IGY B;  1ALK A;  1ALH A;  1AJD A;  1HQA A;  1K7H A;  5LRM A;  2RH6 A;  2W5T A; 
#chains in the Genus database with same CATH homology
 3OT9 A;  3B5Q A;  3T00 A;  3TWZ A;  1EW2 A;  1E33 P;  2IFY A;  5GRR A;  5L0E A;  1E3C P;  3MK1 A;  1O99 A;  1KHJ A;  4LRD A;  3UN2 A;  5C66 A;  5DLW A;  4MY4 A;  3KD8 A;  1ELX A;  3IDD A;  5INH A;  4B56 A;  1AJC A;  1KHK A;  4KAY A;  4GTZ A;  4LR9 A;  3M8Z A;  4MIV A;  5DLV A;  4KJD A;  3MK2 A;  4UOP A;  2IUC A;  1P49 A;  1KHN A;  3NKN A;  3UN3 A;  1KH4 A;  3MK0 A;  5EGH A;  4ZG7 A;  2D1G A;  3A52 A;  3ED4 A;  5HRT A;  4N7T A;  3NKM A;  1ZEF A;  3DPC A;  3E2D A;  2GSU A;  4GTX A;  1AUK A;  1EW9 A;  3LXQ A;  2ZKT A;  4LR2 A;  1Y6V A;  2ANH A;  4LQY A;  1HJK A;  1ELY A;  2XRG A;  3BDH A;  1O98 A;  4LRA A;  5LRN A;  4FDI A;  1B8J A;  3BDG B;  1KHL A;  1E1Z P;  3TX0 A;  1KH5 A;  2W8S A;  1URA A;  3M8W A;  1EW8 A;  3IGZ B;  4KM4 A;  3UN5 A;  2GSN A;  1N2L A;  4UOO A;  2GA3 A;  3M8Y A;  3WAX A;  1HDH A;  1AJA A;  2W5R A;  1EJJ A;  2QZU A;  3SZZ A;  4LRE A;  5GOV A;  1N2K A;  4UPI A;  5IJS A;  1SHQ A;  2W5V A;  4TN0 A;  4NWJ A;  4CXK A;  4NWX A;  1ALI A;  4QAX A;  3NKO A;  3TG0 A;  2XR9 A;  1AJB A;  2IUC B;  4GTY A;  5L0K A;  5AJ9 A;  3NKQ A;  4CYR A;  4YR1 A;  3WAV A;  3BDF A;  4UOR A;  1ZEB A;  4LRB A;  5EGE A;  1KH7 A;  4KAV A;  4CXU A;  5TJ3 A;  3T01 A;  5DLT A;  4FDJ A;  3T02 A;  2W5S A;  3NKP A;  1FSU A;  2W5W A;  5IJQ A;  2W5X A;  1Y7A A;  1KH9 A;  4ZG6 A;  3BDG A;  1ALJ A;  1EI6 A;  4LRC A;  4UPH A;  5L0B A;  5K4P A;  3WAY A;  2GSO A;  1ELZ A;  3M7V A;  3UO0 A;  5LQQ A;  4ZG9 A;  1ZED A;  4MHX A;  3SZY A;  3WAW A;  1ED9 A;  1ANJ A;  5KXA A;  4CXS A;  3NKR A;  4LRF A;  4LR8 A;  1ANI A;  1ED8 A;  2X98 A;  4LR7 A;  2G9Y A;  3UNY A;  1E2S P;  1URB A;  1SHN A;  4UPK A;  4GTW A;  3Q3Q A;  3NVL A;  2GLQ A;  5LIA A;  2W8D A;  4CYS A;  3CMR A;  3WBH A;  3DYC A;  4UPL A;  4ZGA A;  1EQJ A;  4KJG A;  2VQR A;  2W5Q A;  3IGY B;  1ALK A;  1ALH A;  1AJD A;  1HQA A;  1K7H A;  5LRM A;  2RH6 A;  2W5T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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