2W5QA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
424
structure length
424
Chain Sequence
b'SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
source organism Staphylococcus aureus
molecule tags Transferase
total genus 167
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5qA02
4LRDA 4ZG6A 1AJDA 3M7VA 4ZG9A 1SHNA 4B56A 3T02A 4FDIA 3Q3QA 5DLWA 1EQJA 5IJSA 4LR7A 4LR8A 3BDGB 3NVLA 3MK2A 1N2LA 1SHQA 3UN3A 4UPKA 4GTWA 5DLVA 3A52A 1ED8A 3DPCA 4YR1A 5L0EA 5DLTA 5LIAA 4QAXA 4N7TA 2ZKTA 4LRAA 4ZG7A 2GSNA 2W8SA 3B5QA 1KHLA 4KJDA 3NKQA 1KHJA 2X98A 4GTYA 2RH6A 4KJGA 4ZGAA 1ALJA 5KXAA 1KHNA 1KHKA 4KM4A 4GTXA 4LRFA 4LRBA 1AUKA 4CXSA 1ALHA 2W5SA 5AJ9A 5K4PA 5GRRA 2QZUA 2IUCA 5LRMA 4CXUA 3WBHA 1K7HA 3NKMA 1Y7AA 3UO0A 2IFYA 1AJAA 1ELXA 2W5VA 5HRTA 1EW9A 1Y6VA 3UN5A 4CYSA 2W5QA 1HQAA 3TWZA 4LREA 1B8JA 4UOOA 1KH7A 1ZEBA 2W8DA 3BDGA 3IGYB 3LXQA 3BDFA 4UORA 3WAXA 3SZZA 1EI6A 1EW2A 4UPIA 4NWJA 2VQRA 3E2DA 1KH5A 1URAA 3OT9A 3TG0A 4UPHA 1HDHA 3SZYA 1ALIA 3M8ZA 1FSUA 3IDDA 3UN2A 3MK0A 5EGHA 1ZEDA 2GLQA 3KD8A 4LR2A 1ANJA 2GSUA 5TJ3A 1ELYA 2W5XA 1E2SP 3DYCA 3UNYA 1EJJA 3WAVA 5LRNA 1KH4A 4KAYA 1ALKA 3NKPA 1E33P 1URBA 3TX0A 3WAYA 3ED4A 2IUCB 1N2KA 3M8WA 3IGZB 4NWXA 1AJCA 5GOVA 5INHA 4CXKA 5L0KA 5IJQA 4MY4A 4KAVA 4LR9A 3T00A 3MK1A 2ANHA 2GA3A 4LRCA 2W5RA 2XRGA 2XR9A 3NKOA 4UOPA 4MIVA 3WAWA 4FDJA 3BDHA 1KH9A 1AJBA 1O99A 1EW8A 4CYRA 1HJKA 4MHXA 5C66A 5L0BA 3NKRA 2G9YA 2W5TA 1P49A 3T01A 3CMRA 1ZEFA 1E1ZP 1O98A 1ANIA 3M8YA 1ELZA 4LQYA 2GSOA 2W5WA 3NKNA 4TN0A 1E3CP 5LQQA 5EGEA 4UPLA 4GTZA 2D1GA 1ED9A
chains in the Genus database with same CATH superfamily
4LRDA 4ZG6A 1AJDA 3M7VA 4ZG9A 1SHNA 4B56A 3T02A 4FDIA 3Q3QA 5DLWA 1EQJA 5IJSA 4LR7A 4LR8A 3BDGB 3NVLA 3MK2A 1N2LA 1SHQA 3UN3A 4UPKA 4GTWA 5DLVA 3A52A 1ED8A 3DPCA 4YR1A 5L0EA 5DLTA 5LIAA 4QAXA 4N7TA 2ZKTA 4LRAA 4ZG7A 2GSNA 2W8SA 3B5QA 1KHLA 4KJDA 3NKQA 1KHJA 2X98A 4GTYA 2RH6A 4KJGA 4ZGAA 1ALJA 5KXAA 1KHNA 1KHKA 4KM4A 4GTXA 4LRFA 4LRBA 1AUKA 4CXSA 1ALHA 2W5SA 5AJ9A 5K4PA 5GRRA 2QZUA 2IUCA 5LRMA 4CXUA 3WBHA 1K7HA 3NKMA 1Y7AA 3UO0A 2IFYA 1AJAA 1ELXA 2W5VA 5HRTA 1EW9A 1Y6VA 3UN5A 4CYSA 2W5QA 1HQAA 3TWZA 4LREA 1B8JA 4UOOA 1KH7A 1ZEBA 2W8DA 3BDGA 3IGYB 3LXQA 3BDFA 4UORA 3WAXA 3SZZA 1EI6A 1EW2A 4UPIA 4NWJA 2VQRA 3E2DA 1KH5A 1URAA 3OT9A 3TG0A 4UPHA 1HDHA 3SZYA 1ALIA 3M8ZA 1FSUA 3IDDA 3UN2A 3MK0A 5EGHA 1ZEDA 2GLQA 3KD8A 4LR2A 1ANJA 2GSUA 5TJ3A 1ELYA 2W5XA 1E2SP 3DYCA 3UNYA 1EJJA 3WAVA 5LRNA 1KH4A 4KAYA 1ALKA 3NKPA 1E33P 1URBA 3TX0A 3WAYA 3ED4A 2IUCB 1N2KA 3M8WA 3IGZB 4NWXA 1AJCA 5GOVA 5INHA 4CXKA 5L0KA 5IJQA 4MY4A 4KAVA 4LR9A 3T00A 3MK1A 2ANHA 2GA3A 4LRCA 2W5RA 2XRGA 2XR9A 3NKOA 4UOPA 4MIVA 3WAWA 4FDJA 3BDHA 1KH9A 1AJBA 1O99A 1EW8A 4CYRA 1HJKA 4MHXA 5C66A 5L0BA 3NKRA 2G9YA 2W5TA 1P49A 3T01A 3CMRA 1ZEFA 1E1ZP 1O98A 1ANIA 3M8YA 1ELZA 4LQYA 2GSOA 2W5WA 3NKNA 4TN0A 1E3CP 5LQQA 5EGEA 4UPLA 4GTZA 2D1GA 1ED9A
chains in the Genus database with same CATH topology
4LRDA 4ZG6A 1AJDA 3M7VA 4ZG9A 1SHNA 4B56A 3T02A 4FDIA 3Q3QA 5DLWA 1EQJA 5IJSA 4LR7A 4LR8A 3BDGB 3NVLA 3MK2A 1N2LA 1SHQA 3UN3A 4UPKA 4GTWA 5DLVA 3A52A 1ED8A 3DPCA 4YR1A 5L0EA 5DLTA 5LIAA 4QAXA 4N7TA 2ZKTA 4LRAA 4ZG7A 2GSNA 2W8SA 3B5QA 1KHLA 4KJDA 3NKQA 1KHJA 2X98A 4GTYA 2RH6A 4KJGA 4ZGAA 1ALJA 5KXAA 1KHNA 1KHKA 4KM4A 4GTXA 4LRFA 4LRBA 1AUKA 4CXSA 1ALHA 2W5SA 5AJ9A 5K4PA 5GRRA 2QZUA 2IUCA 5LRMA 4CXUA 3WBHA 1K7HA 3NKMA 1Y7AA 3UO0A 2IFYA 1AJAA 1ELXA 2W5VA 5HRTA 1EW9A 1Y6VA 3UN5A 4CYSA 2W5QA 1HQAA 3TWZA 4LREA 1B8JA 4UOOA 1KH7A 1ZEBA 2W8DA 3BDGA 3IGYB 3LXQA 3BDFA 4UORA 3WAXA 3SZZA 1EI6A 1EW2A 4UPIA 4NWJA 2VQRA 3E2DA 1KH5A 1URAA 3OT9A 3TG0A 4UPHA 1HDHA 3SZYA 1ALIA 3M8ZA 1FSUA 3IDDA 3UN2A 3MK0A 5EGHA 1ZEDA 2GLQA 3KD8A 4LR2A 1ANJA 2GSUA 5TJ3A 1ELYA 2W5XA 1E2SP 3DYCA 3UNYA 1EJJA 3WAVA 5LRNA 1KH4A 4KAYA 1ALKA 3NKPA 1E33P 1URBA 3TX0A 3WAYA 3ED4A 2IUCB 1N2KA 3M8WA 3IGZB 4NWXA 1AJCA 5GOVA 5INHA 4CXKA 5L0KA 5IJQA 4MY4A 4KAVA 4LR9A 3T00A 3MK1A 2ANHA 2GA3A 4LRCA 2W5RA 2XRGA 2XR9A 3NKOA 4UOPA 4MIVA 3WAWA 4FDJA 3BDHA 1KH9A 1AJBA 1O99A 1EW8A 4CYRA 1HJKA 4MHXA 5C66A 5L0BA 3NKRA 2G9YA 2W5TA 1P49A 3T01A 3CMRA 1ZEFA 1E1ZP 1O98A 1ANIA 3M8YA 1ELZA 4LQYA 2GSOA 2W5WA 3NKNA 4TN0A 1E3CP 5LQQA 5EGEA 4UPLA 4GTZA 2D1GA 1ED9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LRD A;  4ZG6 A;  1AJD A;  3M7V A;  4ZG9 A;  1SHN A;  4B56 A;  3T02 A;  4FDI A;  3Q3Q A;  5DLW A;  1EQJ A;  5IJS A;  4LR7 A;  4LR8 A;  3BDG B;  3NVL A;  3MK2 A;  1N2L A;  1SHQ A;  3UN3 A;  4UPK A;  4GTW A;  5DLV A;  3A52 A;  1ED8 A;  3DPC A;  4YR1 A;  5L0E A;  5DLT A;  5LIA A;  4QAX A;  4N7T A;  2ZKT A;  4LRA A;  4ZG7 A;  2GSN A;  2W8S A;  3B5Q A;  1KHL A;  4KJD A;  3NKQ A;  1KHJ A;  2X98 A;  4GTY A;  2RH6 A;  4KJG A;  4ZGA A;  1ALJ A;  5KXA A;  1KHN A;  1KHK A;  4KM4 A;  4GTX A;  4LRF A;  4LRB A;  1AUK A;  4CXS A;  1ALH A;  2W5S A;  5AJ9 A;  5K4P A;  5GRR A;  2QZU A;  2IUC A;  5LRM A;  4CXU A;  3WBH A;  1K7H A;  3NKM A;  1Y7A A;  3UO0 A;  2IFY A;  1AJA A;  1ELX A;  2W5V A;  5HRT A;  1EW9 A;  1Y6V A;  3UN5 A;  4CYS A;  2W5Q A;  1HQA A;  3TWZ A;  4LRE A;  1B8J A;  4UOO A;  1KH7 A;  1ZEB A;  2W8D A;  3BDG A;  3IGY B;  3LXQ A;  3BDF A;  4UOR A;  3WAX A;  3SZZ A;  1EI6 A;  1EW2 A;  4UPI A;  4NWJ A;  2VQR A;  3E2D A;  1KH5 A;  1URA A;  3OT9 A;  3TG0 A;  4UPH A;  1HDH A;  3SZY A;  1ALI A;  3M8Z A;  1FSU A;  3IDD A;  3UN2 A;  3MK0 A;  5EGH A;  1ZED A;  2GLQ A;  3KD8 A;  4LR2 A;  1ANJ A;  2GSU A;  5TJ3 A;  1ELY A;  2W5X A;  1E2S P;  3DYC A;  3UNY A;  1EJJ A;  3WAV A;  5LRN A;  1KH4 A;  4KAY A;  1ALK A;  3NKP A;  1E33 P;  1URB A;  3TX0 A;  3WAY A;  3ED4 A;  2IUC B;  1N2K A;  3M8W A;  3IGZ B;  4NWX A;  1AJC A;  5GOV A;  5INH A;  4CXK A;  5L0K A;  5IJQ A;  4MY4 A;  4KAV A;  4LR9 A;  3T00 A;  3MK1 A;  2ANH A;  2GA3 A;  4LRC A;  2W5R A;  2XRG A;  2XR9 A;  3NKO A;  4UOP A;  4MIV A;  3WAW A;  4FDJ A;  3BDH A;  1KH9 A;  1AJB A;  1O99 A;  1EW8 A;  4CYR A;  1HJK A;  4MHX A;  5C66 A;  5L0B A;  3NKR A;  2G9Y A;  2W5T A;  1P49 A;  3T01 A;  3CMR A;  1ZEF A;  1E1Z P;  1O98 A;  1ANI A;  3M8Y A;  1ELZ A;  4LQY A;  2GSO A;  2W5W A;  3NKN A;  4TN0 A;  1E3C P;  5LQQ A;  5EGE A;  4UPL A;  4GTZ A;  2D1G A;  1ED9 A; 
#chains in the Genus database with same CATH topology
 4LRD A;  4ZG6 A;  1AJD A;  3M7V A;  4ZG9 A;  1SHN A;  4B56 A;  3T02 A;  4FDI A;  3Q3Q A;  5DLW A;  1EQJ A;  5IJS A;  4LR7 A;  4LR8 A;  3BDG B;  3NVL A;  3MK2 A;  1N2L A;  1SHQ A;  3UN3 A;  4UPK A;  4GTW A;  5DLV A;  3A52 A;  1ED8 A;  3DPC A;  4YR1 A;  5L0E A;  5DLT A;  5LIA A;  4QAX A;  4N7T A;  2ZKT A;  4LRA A;  4ZG7 A;  2GSN A;  2W8S A;  3B5Q A;  1KHL A;  4KJD A;  3NKQ A;  1KHJ A;  2X98 A;  4GTY A;  2RH6 A;  4KJG A;  4ZGA A;  1ALJ A;  5KXA A;  1KHN A;  1KHK A;  4KM4 A;  4GTX A;  4LRF A;  4LRB A;  1AUK A;  4CXS A;  1ALH A;  2W5S A;  5AJ9 A;  5K4P A;  5GRR A;  2QZU A;  2IUC A;  5LRM A;  4CXU A;  3WBH A;  1K7H A;  3NKM A;  1Y7A A;  3UO0 A;  2IFY A;  1AJA A;  1ELX A;  2W5V A;  5HRT A;  1EW9 A;  1Y6V A;  3UN5 A;  4CYS A;  2W5Q A;  1HQA A;  3TWZ A;  4LRE A;  1B8J A;  4UOO A;  1KH7 A;  1ZEB A;  2W8D A;  3BDG A;  3IGY B;  3LXQ A;  3BDF A;  4UOR A;  3WAX A;  3SZZ A;  1EI6 A;  1EW2 A;  4UPI A;  4NWJ A;  2VQR A;  3E2D A;  1KH5 A;  1URA A;  3OT9 A;  3TG0 A;  4UPH A;  1HDH A;  3SZY A;  1ALI A;  3M8Z A;  1FSU A;  3IDD A;  3UN2 A;  3MK0 A;  5EGH A;  1ZED A;  2GLQ A;  3KD8 A;  4LR2 A;  1ANJ A;  2GSU A;  5TJ3 A;  1ELY A;  2W5X A;  1E2S P;  3DYC A;  3UNY A;  1EJJ A;  3WAV A;  5LRN A;  1KH4 A;  4KAY A;  1ALK A;  3NKP A;  1E33 P;  1URB A;  3TX0 A;  3WAY A;  3ED4 A;  2IUC B;  1N2K A;  3M8W A;  3IGZ B;  4NWX A;  1AJC A;  5GOV A;  5INH A;  4CXK A;  5L0K A;  5IJQ A;  4MY4 A;  4KAV A;  4LR9 A;  3T00 A;  3MK1 A;  2ANH A;  2GA3 A;  4LRC A;  2W5R A;  2XRG A;  2XR9 A;  3NKO A;  4UOP A;  4MIV A;  3WAW A;  4FDJ A;  3BDH A;  1KH9 A;  1AJB A;  1O99 A;  1EW8 A;  4CYR A;  1HJK A;  4MHX A;  5C66 A;  5L0B A;  3NKR A;  2G9Y A;  2W5T A;  1P49 A;  3T01 A;  3CMR A;  1ZEF A;  1E1Z P;  1O98 A;  1ANI A;  3M8Y A;  1ELZ A;  4LQY A;  2GSO A;  2W5W A;  3NKN A;  4TN0 A;  1E3C P;  5LQQ A;  5EGE A;  4UPL A;  4GTZ A;  2D1G A;  1ED9 A; 
#chains in the Genus database with same CATH homology
 4LRD A;  4ZG6 A;  1AJD A;  3M7V A;  4ZG9 A;  1SHN A;  4B56 A;  3T02 A;  4FDI A;  3Q3Q A;  5DLW A;  1EQJ A;  5IJS A;  4LR7 A;  4LR8 A;  3BDG B;  3NVL A;  3MK2 A;  1N2L A;  1SHQ A;  3UN3 A;  4UPK A;  4GTW A;  5DLV A;  3A52 A;  1ED8 A;  3DPC A;  4YR1 A;  5L0E A;  5DLT A;  5LIA A;  4QAX A;  4N7T A;  2ZKT A;  4LRA A;  4ZG7 A;  2GSN A;  2W8S A;  3B5Q A;  1KHL A;  4KJD A;  3NKQ A;  1KHJ A;  2X98 A;  4GTY A;  2RH6 A;  4KJG A;  4ZGA A;  1ALJ A;  5KXA A;  1KHN A;  1KHK A;  4KM4 A;  4GTX A;  4LRF A;  4LRB A;  1AUK A;  4CXS A;  1ALH A;  2W5S A;  5AJ9 A;  5K4P A;  5GRR A;  2QZU A;  2IUC A;  5LRM A;  4CXU A;  3WBH A;  1K7H A;  3NKM A;  1Y7A A;  3UO0 A;  2IFY A;  1AJA A;  1ELX A;  2W5V A;  5HRT A;  1EW9 A;  1Y6V A;  3UN5 A;  4CYS A;  2W5Q A;  1HQA A;  3TWZ A;  4LRE A;  1B8J A;  4UOO A;  1KH7 A;  1ZEB A;  2W8D A;  3BDG A;  3IGY B;  3LXQ A;  3BDF A;  4UOR A;  3WAX A;  3SZZ A;  1EI6 A;  1EW2 A;  4UPI A;  4NWJ A;  2VQR A;  3E2D A;  1KH5 A;  1URA A;  3OT9 A;  3TG0 A;  4UPH A;  1HDH A;  3SZY A;  1ALI A;  3M8Z A;  1FSU A;  3IDD A;  3UN2 A;  3MK0 A;  5EGH A;  1ZED A;  2GLQ A;  3KD8 A;  4LR2 A;  1ANJ A;  2GSU A;  5TJ3 A;  1ELY A;  2W5X A;  1E2S P;  3DYC A;  3UNY A;  1EJJ A;  3WAV A;  5LRN A;  1KH4 A;  4KAY A;  1ALK A;  3NKP A;  1E33 P;  1URB A;  3TX0 A;  3WAY A;  3ED4 A;  2IUC B;  1N2K A;  3M8W A;  3IGZ B;  4NWX A;  1AJC A;  5GOV A;  5INH A;  4CXK A;  5L0K A;  5IJQ A;  4MY4 A;  4KAV A;  4LR9 A;  3T00 A;  3MK1 A;  2ANH A;  2GA3 A;  4LRC A;  2W5R A;  2XRG A;  2XR9 A;  3NKO A;  4UOP A;  4MIV A;  3WAW A;  4FDJ A;  3BDH A;  1KH9 A;  1AJB A;  1O99 A;  1EW8 A;  4CYR A;  1HJK A;  4MHX A;  5C66 A;  5L0B A;  3NKR A;  2G9Y A;  2W5T A;  1P49 A;  3T01 A;  3CMR A;  1ZEF A;  1E1Z P;  1O98 A;  1ANI A;  3M8Y A;  1ELZ A;  4LQY A;  2GSO A;  2W5W A;  3NKN A;  4TN0 A;  1E3C P;  5LQQ A;  5EGE A;  4UPL A;  4GTZ A;  2D1G A;  1ED9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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