2W5QA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
424
structure length
424
Chain Sequence
b'SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
total genus 167
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5qA02
1AJDA 1AJBA 2W5WA 1B8JA 5EGHA 1KH7A 2W8DA 3NKPA 3SZYA 2W5RA 1ELZA 1P49A 3IGZB 1N2LA 3B5QA 5LQQA 1EJJA 4N7TA 4LREA 3TWZA 1ANJA 3T01A 2GSOA 5IJSA 3BDFA 1URBA 2W5QA 1ELYA 5TJ3A 4KM4A 3SZZA 4UORA 2W5VA 4UPHA 1HQAA 1Y7AA 4CXSA 3E2DA 1ALKA 1KH5A 1E2SP 1ED9A 2GSUA 2GA3A 2W8SA 3BDGB 4LRFA 3NVLA 3NKRA 3CMRA 3UO0A 1ALHA 3WBHA 4B56A 1ANIA 1KHLA 4KJDA 1HJKA 3WAWA 1E1ZP 3MK1A 4UPLA 4LRDA 1ZEBA 3IDDA 2ANHA 3ED4A 3MK2A 4FDIA 4LRBA 3UN3A 4KAYA 4YR1A 1SHQA 4GTWA 3UNYA 5GRRA 5LIAA 2D1GA 3T02A 1AJCA 2IFYA 1KHJA 5C66A 4LR2A 4GTZA 3LXQA 1KHNA 2QZUA 3IGYB 3DYCA 3BDGA 1O99A 5DLVA 4KJGA 4LR9A 3WAYA 4QAXA 1E3CP 4GTYA 1EW9A 1FSUA 4UPKA 2RH6A 5INHA 5K4PA 5L0KA 3A52A 1ZEDA 1KH9A 1ALJA 5IJQA 4LRAA 3NKQA 1O98A 3MK0A 3TX0A 3WAVA 3Q3QA 1ED8A 2XR9A 1AUKA 1EW8A 3M7VA 3T00A 5AJ9A 1N2KA 1AJAA 3BDHA 4MY4A 4LR8A 2XRGA 4CXUA 1ALIA 1Y6VA 2VQRA 4ZG7A 2W5SA 3KD8A 2IUCB 1ELXA 3NKMA 2GLQA 4UOPA 3TG0A 3M8WA 1EQJA 4TN0A 5LRNA 5HRTA 1KHKA 4MIVA 2GSNA 4GTXA 1URAA 4NWXA 5DLTA 2W5XA 4ZG9A 1EW2A 5KXAA 3NKOA 4KAVA 1E33P 1ZEFA 1K7HA 2G9YA 5L0BA 4MHXA 4UPIA 4LR7A 5EGEA 3NKNA 4ZG6A 5L0EA 4CXKA 4CYSA 3UN2A 3DPCA 1KH4A 1EI6A 5DLWA 4FDJA 4UOOA 1HDHA 3UN5A 5LRMA 4NWJA 4CYRA 3M8YA 2X98A 3M8ZA 2IUCA 1SHNA 4LRCA 2W5TA 4LQYA 5GOVA 4ZGAA 3OT9A 3WAXA 2ZKTA
chains in the Genus database with same CATH superfamily
1AJDA 1AJBA 2W5WA 1B8JA 5EGHA 1KH7A 2W8DA 3NKPA 3SZYA 2W5RA 1ELZA 1P49A 3IGZB 1N2LA 3B5QA 5LQQA 1EJJA 4N7TA 4LREA 3TWZA 1ANJA 3T01A 2GSOA 5IJSA 3BDFA 1URBA 2W5QA 1ELYA 5TJ3A 4KM4A 3SZZA 4UORA 2W5VA 4UPHA 1HQAA 1Y7AA 4CXSA 3E2DA 1ALKA 1KH5A 1E2SP 1ED9A 2GSUA 2GA3A 2W8SA 3BDGB 4LRFA 3NVLA 3NKRA 3CMRA 3UO0A 1ALHA 3WBHA 4B56A 1ANIA 1KHLA 4KJDA 1HJKA 3WAWA 1E1ZP 3MK1A 4UPLA 4LRDA 1ZEBA 3IDDA 2ANHA 3ED4A 3MK2A 4FDIA 4LRBA 3UN3A 4KAYA 4YR1A 1SHQA 4GTWA 3UNYA 5GRRA 5LIAA 2D1GA 3T02A 1AJCA 2IFYA 1KHJA 5C66A 4LR2A 4GTZA 3LXQA 1KHNA 2QZUA 3IGYB 3DYCA 3BDGA 1O99A 5DLVA 4KJGA 4LR9A 3WAYA 4QAXA 1E3CP 4GTYA 1EW9A 1FSUA 4UPKA 2RH6A 5INHA 5K4PA 5L0KA 3A52A 1ZEDA 1KH9A 1ALJA 5IJQA 4LRAA 3NKQA 1O98A 3MK0A 3TX0A 3WAVA 3Q3QA 1ED8A 2XR9A 1AUKA 1EW8A 3M7VA 3T00A 5AJ9A 1N2KA 1AJAA 3BDHA 4MY4A 4LR8A 2XRGA 4CXUA 1ALIA 1Y6VA 2VQRA 4ZG7A 2W5SA 3KD8A 2IUCB 1ELXA 3NKMA 2GLQA 4UOPA 3TG0A 3M8WA 1EQJA 4TN0A 5LRNA 5HRTA 1KHKA 4MIVA 2GSNA 4GTXA 1URAA 4NWXA 5DLTA 2W5XA 4ZG9A 1EW2A 5KXAA 3NKOA 4KAVA 1E33P 1ZEFA 1K7HA 2G9YA 5L0BA 4MHXA 4UPIA 4LR7A 5EGEA 3NKNA 4ZG6A 5L0EA 4CXKA 4CYSA 3UN2A 3DPCA 1KH4A 1EI6A 5DLWA 4FDJA 4UOOA 1HDHA 3UN5A 5LRMA 4NWJA 4CYRA 3M8YA 2X98A 3M8ZA 2IUCA 1SHNA 4LRCA 2W5TA 4LQYA 5GOVA 4ZGAA 3OT9A 3WAXA 2ZKTA
chains in the Genus database with same CATH topology
1AJDA 1AJBA 2W5WA 1B8JA 5EGHA 1KH7A 2W8DA 3NKPA 3SZYA 2W5RA 1ELZA 1P49A 3IGZB 1N2LA 3B5QA 5LQQA 1EJJA 4N7TA 4LREA 3TWZA 1ANJA 3T01A 2GSOA 5IJSA 3BDFA 1URBA 2W5QA 1ELYA 5TJ3A 4KM4A 3SZZA 4UORA 2W5VA 4UPHA 1HQAA 1Y7AA 4CXSA 3E2DA 1ALKA 1KH5A 1E2SP 1ED9A 2GSUA 2GA3A 2W8SA 3BDGB 4LRFA 3NVLA 3NKRA 3CMRA 3UO0A 1ALHA 3WBHA 4B56A 1ANIA 1KHLA 4KJDA 1HJKA 3WAWA 1E1ZP 3MK1A 4UPLA 4LRDA 1ZEBA 3IDDA 2ANHA 3ED4A 3MK2A 4FDIA 4LRBA 3UN3A 4KAYA 4YR1A 1SHQA 4GTWA 3UNYA 5GRRA 5LIAA 2D1GA 3T02A 1AJCA 2IFYA 1KHJA 5C66A 4LR2A 4GTZA 3LXQA 1KHNA 2QZUA 3IGYB 3DYCA 3BDGA 1O99A 5DLVA 4KJGA 4LR9A 3WAYA 4QAXA 1E3CP 4GTYA 1EW9A 1FSUA 4UPKA 2RH6A 5INHA 5K4PA 5L0KA 3A52A 1ZEDA 1KH9A 1ALJA 5IJQA 4LRAA 3NKQA 1O98A 3MK0A 3TX0A 3WAVA 3Q3QA 1ED8A 2XR9A 1AUKA 1EW8A 3M7VA 3T00A 5AJ9A 1N2KA 1AJAA 3BDHA 4MY4A 4LR8A 2XRGA 4CXUA 1ALIA 1Y6VA 2VQRA 4ZG7A 2W5SA 3KD8A 2IUCB 1ELXA 3NKMA 2GLQA 4UOPA 3TG0A 3M8WA 1EQJA 4TN0A 5LRNA 5HRTA 1KHKA 4MIVA 2GSNA 4GTXA 1URAA 4NWXA 5DLTA 2W5XA 4ZG9A 1EW2A 5KXAA 3NKOA 4KAVA 1E33P 1ZEFA 1K7HA 2G9YA 5L0BA 4MHXA 4UPIA 4LR7A 5EGEA 3NKNA 4ZG6A 5L0EA 4CXKA 4CYSA 3UN2A 3DPCA 1KH4A 1EI6A 5DLWA 4FDJA 4UOOA 1HDHA 3UN5A 5LRMA 4NWJA 4CYRA 3M8YA 2X98A 3M8ZA 2IUCA 1SHNA 4LRCA 2W5TA 4LQYA 5GOVA 4ZGAA 3OT9A 3WAXA 2ZKTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AJD A;  1AJB A;  2W5W A;  1B8J A;  5EGH A;  1KH7 A;  2W8D A;  3NKP A;  3SZY A;  2W5R A;  1ELZ A;  1P49 A;  3IGZ B;  1N2L A;  3B5Q A;  5LQQ A;  1EJJ A;  4N7T A;  4LRE A;  3TWZ A;  1ANJ A;  3T01 A;  2GSO A;  5IJS A;  3BDF A;  1URB A;  2W5Q A;  1ELY A;  5TJ3 A;  4KM4 A;  3SZZ A;  4UOR A;  2W5V A;  4UPH A;  1HQA A;  1Y7A A;  4CXS A;  3E2D A;  1ALK A;  1KH5 A;  1E2S P;  1ED9 A;  2GSU A;  2GA3 A;  2W8S A;  3BDG B;  4LRF A;  3NVL A;  3NKR A;  3CMR A;  3UO0 A;  1ALH A;  3WBH A;  4B56 A;  1ANI A;  1KHL A;  4KJD A;  1HJK A;  3WAW A;  1E1Z P;  3MK1 A;  4UPL A;  4LRD A;  1ZEB A;  3IDD A;  2ANH A;  3ED4 A;  3MK2 A;  4FDI A;  4LRB A;  3UN3 A;  4KAY A;  4YR1 A;  1SHQ A;  4GTW A;  3UNY A;  5GRR A;  5LIA A;  2D1G A;  3T02 A;  1AJC A;  2IFY A;  1KHJ A;  5C66 A;  4LR2 A;  4GTZ A;  3LXQ A;  1KHN A;  2QZU A;  3IGY B;  3DYC A;  3BDG A;  1O99 A;  5DLV A;  4KJG A;  4LR9 A;  3WAY A;  4QAX A;  1E3C P;  4GTY A;  1EW9 A;  1FSU A;  4UPK A;  2RH6 A;  5INH A;  5K4P A;  5L0K A;  3A52 A;  1ZED A;  1KH9 A;  1ALJ A;  5IJQ A;  4LRA A;  3NKQ A;  1O98 A;  3MK0 A;  3TX0 A;  3WAV A;  3Q3Q A;  1ED8 A;  2XR9 A;  1AUK A;  1EW8 A;  3M7V A;  3T00 A;  5AJ9 A;  1N2K A;  1AJA A;  3BDH A;  4MY4 A;  4LR8 A;  2XRG A;  4CXU A;  1ALI A;  1Y6V A;  2VQR A;  4ZG7 A;  2W5S A;  3KD8 A;  2IUC B;  1ELX A;  3NKM A;  2GLQ A;  4UOP A;  3TG0 A;  3M8W A;  1EQJ A;  4TN0 A;  5LRN A;  5HRT A;  1KHK A;  4MIV A;  2GSN A;  4GTX A;  1URA A;  4NWX A;  5DLT A;  2W5X A;  4ZG9 A;  1EW2 A;  5KXA A;  3NKO A;  4KAV A;  1E33 P;  1ZEF A;  1K7H A;  2G9Y A;  5L0B A;  4MHX A;  4UPI A;  4LR7 A;  5EGE A;  3NKN A;  4ZG6 A;  5L0E A;  4CXK A;  4CYS A;  3UN2 A;  3DPC A;  1KH4 A;  1EI6 A;  5DLW A;  4FDJ A;  4UOO A;  1HDH A;  3UN5 A;  5LRM A;  4NWJ A;  4CYR A;  3M8Y A;  2X98 A;  3M8Z A;  2IUC A;  1SHN A;  4LRC A;  2W5T A;  4LQY A;  5GOV A;  4ZGA A;  3OT9 A;  3WAX A;  2ZKT A; 
#chains in the Genus database with same CATH topology
 1AJD A;  1AJB A;  2W5W A;  1B8J A;  5EGH A;  1KH7 A;  2W8D A;  3NKP A;  3SZY A;  2W5R A;  1ELZ A;  1P49 A;  3IGZ B;  1N2L A;  3B5Q A;  5LQQ A;  1EJJ A;  4N7T A;  4LRE A;  3TWZ A;  1ANJ A;  3T01 A;  2GSO A;  5IJS A;  3BDF A;  1URB A;  2W5Q A;  1ELY A;  5TJ3 A;  4KM4 A;  3SZZ A;  4UOR A;  2W5V A;  4UPH A;  1HQA A;  1Y7A A;  4CXS A;  3E2D A;  1ALK A;  1KH5 A;  1E2S P;  1ED9 A;  2GSU A;  2GA3 A;  2W8S A;  3BDG B;  4LRF A;  3NVL A;  3NKR A;  3CMR A;  3UO0 A;  1ALH A;  3WBH A;  4B56 A;  1ANI A;  1KHL A;  4KJD A;  1HJK A;  3WAW A;  1E1Z P;  3MK1 A;  4UPL A;  4LRD A;  1ZEB A;  3IDD A;  2ANH A;  3ED4 A;  3MK2 A;  4FDI A;  4LRB A;  3UN3 A;  4KAY A;  4YR1 A;  1SHQ A;  4GTW A;  3UNY A;  5GRR A;  5LIA A;  2D1G A;  3T02 A;  1AJC A;  2IFY A;  1KHJ A;  5C66 A;  4LR2 A;  4GTZ A;  3LXQ A;  1KHN A;  2QZU A;  3IGY B;  3DYC A;  3BDG A;  1O99 A;  5DLV A;  4KJG A;  4LR9 A;  3WAY A;  4QAX A;  1E3C P;  4GTY A;  1EW9 A;  1FSU A;  4UPK A;  2RH6 A;  5INH A;  5K4P A;  5L0K A;  3A52 A;  1ZED A;  1KH9 A;  1ALJ A;  5IJQ A;  4LRA A;  3NKQ A;  1O98 A;  3MK0 A;  3TX0 A;  3WAV A;  3Q3Q A;  1ED8 A;  2XR9 A;  1AUK A;  1EW8 A;  3M7V A;  3T00 A;  5AJ9 A;  1N2K A;  1AJA A;  3BDH A;  4MY4 A;  4LR8 A;  2XRG A;  4CXU A;  1ALI A;  1Y6V A;  2VQR A;  4ZG7 A;  2W5S A;  3KD8 A;  2IUC B;  1ELX A;  3NKM A;  2GLQ A;  4UOP A;  3TG0 A;  3M8W A;  1EQJ A;  4TN0 A;  5LRN A;  5HRT A;  1KHK A;  4MIV A;  2GSN A;  4GTX A;  1URA A;  4NWX A;  5DLT A;  2W5X A;  4ZG9 A;  1EW2 A;  5KXA A;  3NKO A;  4KAV A;  1E33 P;  1ZEF A;  1K7H A;  2G9Y A;  5L0B A;  4MHX A;  4UPI A;  4LR7 A;  5EGE A;  3NKN A;  4ZG6 A;  5L0E A;  4CXK A;  4CYS A;  3UN2 A;  3DPC A;  1KH4 A;  1EI6 A;  5DLW A;  4FDJ A;  4UOO A;  1HDH A;  3UN5 A;  5LRM A;  4NWJ A;  4CYR A;  3M8Y A;  2X98 A;  3M8Z A;  2IUC A;  1SHN A;  4LRC A;  2W5T A;  4LQY A;  5GOV A;  4ZGA A;  3OT9 A;  3WAX A;  2ZKT A; 
#chains in the Genus database with same CATH homology
 1AJD A;  1AJB A;  2W5W A;  1B8J A;  5EGH A;  1KH7 A;  2W8D A;  3NKP A;  3SZY A;  2W5R A;  1ELZ A;  1P49 A;  3IGZ B;  1N2L A;  3B5Q A;  5LQQ A;  1EJJ A;  4N7T A;  4LRE A;  3TWZ A;  1ANJ A;  3T01 A;  2GSO A;  5IJS A;  3BDF A;  1URB A;  2W5Q A;  1ELY A;  5TJ3 A;  4KM4 A;  3SZZ A;  4UOR A;  2W5V A;  4UPH A;  1HQA A;  1Y7A A;  4CXS A;  3E2D A;  1ALK A;  1KH5 A;  1E2S P;  1ED9 A;  2GSU A;  2GA3 A;  2W8S A;  3BDG B;  4LRF A;  3NVL A;  3NKR A;  3CMR A;  3UO0 A;  1ALH A;  3WBH A;  4B56 A;  1ANI A;  1KHL A;  4KJD A;  1HJK A;  3WAW A;  1E1Z P;  3MK1 A;  4UPL A;  4LRD A;  1ZEB A;  3IDD A;  2ANH A;  3ED4 A;  3MK2 A;  4FDI A;  4LRB A;  3UN3 A;  4KAY A;  4YR1 A;  1SHQ A;  4GTW A;  3UNY A;  5GRR A;  5LIA A;  2D1G A;  3T02 A;  1AJC A;  2IFY A;  1KHJ A;  5C66 A;  4LR2 A;  4GTZ A;  3LXQ A;  1KHN A;  2QZU A;  3IGY B;  3DYC A;  3BDG A;  1O99 A;  5DLV A;  4KJG A;  4LR9 A;  3WAY A;  4QAX A;  1E3C P;  4GTY A;  1EW9 A;  1FSU A;  4UPK A;  2RH6 A;  5INH A;  5K4P A;  5L0K A;  3A52 A;  1ZED A;  1KH9 A;  1ALJ A;  5IJQ A;  4LRA A;  3NKQ A;  1O98 A;  3MK0 A;  3TX0 A;  3WAV A;  3Q3Q A;  1ED8 A;  2XR9 A;  1AUK A;  1EW8 A;  3M7V A;  3T00 A;  5AJ9 A;  1N2K A;  1AJA A;  3BDH A;  4MY4 A;  4LR8 A;  2XRG A;  4CXU A;  1ALI A;  1Y6V A;  2VQR A;  4ZG7 A;  2W5S A;  3KD8 A;  2IUC B;  1ELX A;  3NKM A;  2GLQ A;  4UOP A;  3TG0 A;  3M8W A;  1EQJ A;  4TN0 A;  5LRN A;  5HRT A;  1KHK A;  4MIV A;  2GSN A;  4GTX A;  1URA A;  4NWX A;  5DLT A;  2W5X A;  4ZG9 A;  1EW2 A;  5KXA A;  3NKO A;  4KAV A;  1E33 P;  1ZEF A;  1K7H A;  2G9Y A;  5L0B A;  4MHX A;  4UPI A;  4LR7 A;  5EGE A;  3NKN A;  4ZG6 A;  5L0E A;  4CXK A;  4CYS A;  3UN2 A;  3DPC A;  1KH4 A;  1EI6 A;  5DLW A;  4FDJ A;  4UOO A;  1HDH A;  3UN5 A;  5LRM A;  4NWJ A;  4CYR A;  3M8Y A;  2X98 A;  3M8Z A;  2IUC A;  1SHN A;  4LRC A;  2W5T A;  4LQY A;  5GOV A;  4ZGA A;  3OT9 A;  3WAX A;  2ZKT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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