2W5QA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
total genus 167
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5qA02
1EQJA 4ZGAA 4TN0A 4YR1A 5LRMA 4NWJA 5HRTA 5EGHA 3BDFA 3M8ZA 1KH7A 2X98A 3MK0A 4GTYA 5DLTA 2RH6A 3WBHA 4UPKA 5AJ9A 4CXUA 3E2DA 3NKMA 4CYRA 4ZG7A 3LXQA 1KHJA 1URAA 2W8SA 4FDJA 4LRBA 2W5QA 1ALIA 1HDHA 1E1ZP 1EW2A 2W5VA 2VQRA 1SHNA 3NKQA 2GA3A 1KHKA 4GTZA 2GSNA 2W5RA 5EGEA 3T01A 2W5WA 2GSOA 3T00A 1ELZA 2G9YA 5IJSA 5DLWA 3BDGA 2D1GA 2QZUA 4LREA 4CXKA 5L0EA 1E2SP 3IGYB 3M8WA 3IGZB 3M7VA 4KJDA 4FDIA 4UOOA 1P49A 5KXAA 1B8JA 1ZEDA 1KH9A 1O98A 1AUKA 1N2KA 1ANIA 1EW8A 3UN2A 3Q3QA 3NKRA 2IUCB 5LRNA 2W5XA 3NKOA 1EI6A 4CYSA 3WAXA 3SZZA 3DPCA 4N7TA 4UORA 4LRAA 4B56A 3BDHA 1ALJA 4KAYA 4ZG6A 3A52A 3TG0A 3WAWA 2XR9A 5GOVA 5L0KA 4GTWA 2W5TA 2ZKTA 1KH4A 5IJQA 1ANJA 5INHA 3TWZA 4LQYA 4LRFA 1E3CP 3UO0A 4CXSA 1SHQA 1K7HA 4LR9A 1N2LA 3CMRA 3TX0A 1E33P 1AJDA 1KHLA 1ED8A 1ZEBA 4LR8A 3ED4A 4LR7A 3NVLA 5TJ3A 3KD8A 5L0BA 5LQQA 5GRRA 4UOPA 2W5SA 1Y7AA 2W8DA 3DYCA 3BDGB 4LR2A 3B5QA 1ALHA 4UPLA 2XRGA 1Y6VA 1FSUA 4ZG9A 1KHNA 4UPIA 4QAXA 5K4PA 3MK1A 5C66A 4MY4A 4GTXA 1KH5A 3NKNA 3OT9A 1ALKA 2GLQA 3IDDA 1AJCA 3UNYA 1ELYA 4KAVA 4KM4A 4MHXA 3WAYA 1O99A 4KJGA 3NKPA 5DLVA 2IFYA 3WAVA 3M8YA 4NWXA 3T02A 2ANHA 4LRDA 1EJJA 1AJAA 1ELXA 1URBA 1AJBA 5LIAA 2IUCA 3UN3A 3UN5A 4UPHA 3SZYA 1HJKA 4LRCA 4MIVA 1EW9A 1HQAA 3MK2A 1ED9A 2GSUA 1ZEFA
chains in the Genus database with same CATH superfamily
1EQJA 4ZGAA 4TN0A 4YR1A 5LRMA 4NWJA 5HRTA 5EGHA 3BDFA 3M8ZA 1KH7A 2X98A 3MK0A 4GTYA 5DLTA 2RH6A 3WBHA 4UPKA 5AJ9A 4CXUA 3E2DA 3NKMA 4CYRA 4ZG7A 3LXQA 1KHJA 1URAA 2W8SA 4FDJA 4LRBA 2W5QA 1ALIA 1HDHA 1E1ZP 1EW2A 2W5VA 2VQRA 1SHNA 3NKQA 2GA3A 1KHKA 4GTZA 2GSNA 2W5RA 5EGEA 3T01A 2W5WA 2GSOA 3T00A 1ELZA 2G9YA 5IJSA 5DLWA 3BDGA 2D1GA 2QZUA 4LREA 4CXKA 5L0EA 1E2SP 3IGYB 3M8WA 3IGZB 3M7VA 4KJDA 4FDIA 4UOOA 1P49A 5KXAA 1B8JA 1ZEDA 1KH9A 1O98A 1AUKA 1N2KA 1ANIA 1EW8A 3UN2A 3Q3QA 3NKRA 2IUCB 5LRNA 2W5XA 3NKOA 1EI6A 4CYSA 3WAXA 3SZZA 3DPCA 4N7TA 4UORA 4LRAA 4B56A 3BDHA 1ALJA 4KAYA 4ZG6A 3A52A 3TG0A 3WAWA 2XR9A 5GOVA 5L0KA 4GTWA 2W5TA 2ZKTA 1KH4A 5IJQA 1ANJA 5INHA 3TWZA 4LQYA 4LRFA 1E3CP 3UO0A 4CXSA 1SHQA 1K7HA 4LR9A 1N2LA 3CMRA 3TX0A 1E33P 1AJDA 1KHLA 1ED8A 1ZEBA 4LR8A 3ED4A 4LR7A 3NVLA 5TJ3A 3KD8A 5L0BA 5LQQA 5GRRA 4UOPA 2W5SA 1Y7AA 2W8DA 3DYCA 3BDGB 4LR2A 3B5QA 1ALHA 4UPLA 2XRGA 1Y6VA 1FSUA 4ZG9A 1KHNA 4UPIA 4QAXA 5K4PA 3MK1A 5C66A 4MY4A 4GTXA 1KH5A 3NKNA 3OT9A 1ALKA 2GLQA 3IDDA 1AJCA 3UNYA 1ELYA 4KAVA 4KM4A 4MHXA 3WAYA 1O99A 4KJGA 3NKPA 5DLVA 2IFYA 3WAVA 3M8YA 4NWXA 3T02A 2ANHA 4LRDA 1EJJA 1AJAA 1ELXA 1URBA 1AJBA 5LIAA 2IUCA 3UN3A 3UN5A 4UPHA 3SZYA 1HJKA 4LRCA 4MIVA 1EW9A 1HQAA 3MK2A 1ED9A 2GSUA 1ZEFA
chains in the Genus database with same CATH topology
1EQJA 4ZGAA 4TN0A 4YR1A 5LRMA 4NWJA 5HRTA 5EGHA 3BDFA 3M8ZA 1KH7A 2X98A 3MK0A 4GTYA 5DLTA 2RH6A 3WBHA 4UPKA 5AJ9A 4CXUA 3E2DA 3NKMA 4CYRA 4ZG7A 3LXQA 1KHJA 1URAA 2W8SA 4FDJA 4LRBA 2W5QA 1ALIA 1HDHA 1E1ZP 1EW2A 2W5VA 2VQRA 1SHNA 3NKQA 2GA3A 1KHKA 4GTZA 2GSNA 2W5RA 5EGEA 3T01A 2W5WA 2GSOA 3T00A 1ELZA 2G9YA 5IJSA 5DLWA 3BDGA 2D1GA 2QZUA 4LREA 4CXKA 5L0EA 1E2SP 3IGYB 3M8WA 3IGZB 3M7VA 4KJDA 4FDIA 4UOOA 1P49A 5KXAA 1B8JA 1ZEDA 1KH9A 1O98A 1AUKA 1N2KA 1ANIA 1EW8A 3UN2A 3Q3QA 3NKRA 2IUCB 5LRNA 2W5XA 3NKOA 1EI6A 4CYSA 3WAXA 3SZZA 3DPCA 4N7TA 4UORA 4LRAA 4B56A 3BDHA 1ALJA 4KAYA 4ZG6A 3A52A 3TG0A 3WAWA 2XR9A 5GOVA 5L0KA 4GTWA 2W5TA 2ZKTA 1KH4A 5IJQA 1ANJA 5INHA 3TWZA 4LQYA 4LRFA 1E3CP 3UO0A 4CXSA 1SHQA 1K7HA 4LR9A 1N2LA 3CMRA 3TX0A 1E33P 1AJDA 1KHLA 1ED8A 1ZEBA 4LR8A 3ED4A 4LR7A 3NVLA 5TJ3A 3KD8A 5L0BA 5LQQA 5GRRA 4UOPA 2W5SA 1Y7AA 2W8DA 3DYCA 3BDGB 4LR2A 3B5QA 1ALHA 4UPLA 2XRGA 1Y6VA 1FSUA 4ZG9A 1KHNA 4UPIA 4QAXA 5K4PA 3MK1A 5C66A 4MY4A 4GTXA 1KH5A 3NKNA 3OT9A 1ALKA 2GLQA 3IDDA 1AJCA 3UNYA 1ELYA 4KAVA 4KM4A 4MHXA 3WAYA 1O99A 4KJGA 3NKPA 5DLVA 2IFYA 3WAVA 3M8YA 4NWXA 3T02A 2ANHA 4LRDA 1EJJA 1AJAA 1ELXA 1URBA 1AJBA 5LIAA 2IUCA 3UN3A 3UN5A 4UPHA 3SZYA 1HJKA 4LRCA 4MIVA 1EW9A 1HQAA 3MK2A 1ED9A 2GSUA 1ZEFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EQJ A;  4ZGA A;  4TN0 A;  4YR1 A;  5LRM A;  4NWJ A;  5HRT A;  5EGH A;  3BDF A;  3M8Z A;  1KH7 A;  2X98 A;  3MK0 A;  4GTY A;  5DLT A;  2RH6 A;  3WBH A;  4UPK A;  5AJ9 A;  4CXU A;  3E2D A;  3NKM A;  4CYR A;  4ZG7 A;  3LXQ A;  1KHJ A;  1URA A;  2W8S A;  4FDJ A;  4LRB A;  2W5Q A;  1ALI A;  1HDH A;  1E1Z P;  1EW2 A;  2W5V A;  2VQR A;  1SHN A;  3NKQ A;  2GA3 A;  1KHK A;  4GTZ A;  2GSN A;  2W5R A;  5EGE A;  3T01 A;  2W5W A;  2GSO A;  3T00 A;  1ELZ A;  2G9Y A;  5IJS A;  5DLW A;  3BDG A;  2D1G A;  2QZU A;  4LRE A;  4CXK A;  5L0E A;  1E2S P;  3IGY B;  3M8W A;  3IGZ B;  3M7V A;  4KJD A;  4FDI A;  4UOO A;  1P49 A;  5KXA A;  1B8J A;  1ZED A;  1KH9 A;  1O98 A;  1AUK A;  1N2K A;  1ANI A;  1EW8 A;  3UN2 A;  3Q3Q A;  3NKR A;  2IUC B;  5LRN A;  2W5X A;  3NKO A;  1EI6 A;  4CYS A;  3WAX A;  3SZZ A;  3DPC A;  4N7T A;  4UOR A;  4LRA A;  4B56 A;  3BDH A;  1ALJ A;  4KAY A;  4ZG6 A;  3A52 A;  3TG0 A;  3WAW A;  2XR9 A;  5GOV A;  5L0K A;  4GTW A;  2W5T A;  2ZKT A;  1KH4 A;  5IJQ A;  1ANJ A;  5INH A;  3TWZ A;  4LQY A;  4LRF A;  1E3C P;  3UO0 A;  4CXS A;  1SHQ A;  1K7H A;  4LR9 A;  1N2L A;  3CMR A;  3TX0 A;  1E33 P;  1AJD A;  1KHL A;  1ED8 A;  1ZEB A;  4LR8 A;  3ED4 A;  4LR7 A;  3NVL A;  5TJ3 A;  3KD8 A;  5L0B A;  5LQQ A;  5GRR A;  4UOP A;  2W5S A;  1Y7A A;  2W8D A;  3DYC A;  3BDG B;  4LR2 A;  3B5Q A;  1ALH A;  4UPL A;  2XRG A;  1Y6V A;  1FSU A;  4ZG9 A;  1KHN A;  4UPI A;  4QAX A;  5K4P A;  3MK1 A;  5C66 A;  4MY4 A;  4GTX A;  1KH5 A;  3NKN A;  3OT9 A;  1ALK A;  2GLQ A;  3IDD A;  1AJC A;  3UNY A;  1ELY A;  4KAV A;  4KM4 A;  4MHX A;  3WAY A;  1O99 A;  4KJG A;  3NKP A;  5DLV A;  2IFY A;  3WAV A;  3M8Y A;  4NWX A;  3T02 A;  2ANH A;  4LRD A;  1EJJ A;  1AJA A;  1ELX A;  1URB A;  1AJB A;  5LIA A;  2IUC A;  3UN3 A;  3UN5 A;  4UPH A;  3SZY A;  1HJK A;  4LRC A;  4MIV A;  1EW9 A;  1HQA A;  3MK2 A;  1ED9 A;  2GSU A;  1ZEF A; 
#chains in the Genus database with same CATH topology
 1EQJ A;  4ZGA A;  4TN0 A;  4YR1 A;  5LRM A;  4NWJ A;  5HRT A;  5EGH A;  3BDF A;  3M8Z A;  1KH7 A;  2X98 A;  3MK0 A;  4GTY A;  5DLT A;  2RH6 A;  3WBH A;  4UPK A;  5AJ9 A;  4CXU A;  3E2D A;  3NKM A;  4CYR A;  4ZG7 A;  3LXQ A;  1KHJ A;  1URA A;  2W8S A;  4FDJ A;  4LRB A;  2W5Q A;  1ALI A;  1HDH A;  1E1Z P;  1EW2 A;  2W5V A;  2VQR A;  1SHN A;  3NKQ A;  2GA3 A;  1KHK A;  4GTZ A;  2GSN A;  2W5R A;  5EGE A;  3T01 A;  2W5W A;  2GSO A;  3T00 A;  1ELZ A;  2G9Y A;  5IJS A;  5DLW A;  3BDG A;  2D1G A;  2QZU A;  4LRE A;  4CXK A;  5L0E A;  1E2S P;  3IGY B;  3M8W A;  3IGZ B;  3M7V A;  4KJD A;  4FDI A;  4UOO A;  1P49 A;  5KXA A;  1B8J A;  1ZED A;  1KH9 A;  1O98 A;  1AUK A;  1N2K A;  1ANI A;  1EW8 A;  3UN2 A;  3Q3Q A;  3NKR A;  2IUC B;  5LRN A;  2W5X A;  3NKO A;  1EI6 A;  4CYS A;  3WAX A;  3SZZ A;  3DPC A;  4N7T A;  4UOR A;  4LRA A;  4B56 A;  3BDH A;  1ALJ A;  4KAY A;  4ZG6 A;  3A52 A;  3TG0 A;  3WAW A;  2XR9 A;  5GOV A;  5L0K A;  4GTW A;  2W5T A;  2ZKT A;  1KH4 A;  5IJQ A;  1ANJ A;  5INH A;  3TWZ A;  4LQY A;  4LRF A;  1E3C P;  3UO0 A;  4CXS A;  1SHQ A;  1K7H A;  4LR9 A;  1N2L A;  3CMR A;  3TX0 A;  1E33 P;  1AJD A;  1KHL A;  1ED8 A;  1ZEB A;  4LR8 A;  3ED4 A;  4LR7 A;  3NVL A;  5TJ3 A;  3KD8 A;  5L0B A;  5LQQ A;  5GRR A;  4UOP A;  2W5S A;  1Y7A A;  2W8D A;  3DYC A;  3BDG B;  4LR2 A;  3B5Q A;  1ALH A;  4UPL A;  2XRG A;  1Y6V A;  1FSU A;  4ZG9 A;  1KHN A;  4UPI A;  4QAX A;  5K4P A;  3MK1 A;  5C66 A;  4MY4 A;  4GTX A;  1KH5 A;  3NKN A;  3OT9 A;  1ALK A;  2GLQ A;  3IDD A;  1AJC A;  3UNY A;  1ELY A;  4KAV A;  4KM4 A;  4MHX A;  3WAY A;  1O99 A;  4KJG A;  3NKP A;  5DLV A;  2IFY A;  3WAV A;  3M8Y A;  4NWX A;  3T02 A;  2ANH A;  4LRD A;  1EJJ A;  1AJA A;  1ELX A;  1URB A;  1AJB A;  5LIA A;  2IUC A;  3UN3 A;  3UN5 A;  4UPH A;  3SZY A;  1HJK A;  4LRC A;  4MIV A;  1EW9 A;  1HQA A;  3MK2 A;  1ED9 A;  2GSU A;  1ZEF A; 
#chains in the Genus database with same CATH homology
 1EQJ A;  4ZGA A;  4TN0 A;  4YR1 A;  5LRM A;  4NWJ A;  5HRT A;  5EGH A;  3BDF A;  3M8Z A;  1KH7 A;  2X98 A;  3MK0 A;  4GTY A;  5DLT A;  2RH6 A;  3WBH A;  4UPK A;  5AJ9 A;  4CXU A;  3E2D A;  3NKM A;  4CYR A;  4ZG7 A;  3LXQ A;  1KHJ A;  1URA A;  2W8S A;  4FDJ A;  4LRB A;  2W5Q A;  1ALI A;  1HDH A;  1E1Z P;  1EW2 A;  2W5V A;  2VQR A;  1SHN A;  3NKQ A;  2GA3 A;  1KHK A;  4GTZ A;  2GSN A;  2W5R A;  5EGE A;  3T01 A;  2W5W A;  2GSO A;  3T00 A;  1ELZ A;  2G9Y A;  5IJS A;  5DLW A;  3BDG A;  2D1G A;  2QZU A;  4LRE A;  4CXK A;  5L0E A;  1E2S P;  3IGY B;  3M8W A;  3IGZ B;  3M7V A;  4KJD A;  4FDI A;  4UOO A;  1P49 A;  5KXA A;  1B8J A;  1ZED A;  1KH9 A;  1O98 A;  1AUK A;  1N2K A;  1ANI A;  1EW8 A;  3UN2 A;  3Q3Q A;  3NKR A;  2IUC B;  5LRN A;  2W5X A;  3NKO A;  1EI6 A;  4CYS A;  3WAX A;  3SZZ A;  3DPC A;  4N7T A;  4UOR A;  4LRA A;  4B56 A;  3BDH A;  1ALJ A;  4KAY A;  4ZG6 A;  3A52 A;  3TG0 A;  3WAW A;  2XR9 A;  5GOV A;  5L0K A;  4GTW A;  2W5T A;  2ZKT A;  1KH4 A;  5IJQ A;  1ANJ A;  5INH A;  3TWZ A;  4LQY A;  4LRF A;  1E3C P;  3UO0 A;  4CXS A;  1SHQ A;  1K7H A;  4LR9 A;  1N2L A;  3CMR A;  3TX0 A;  1E33 P;  1AJD A;  1KHL A;  1ED8 A;  1ZEB A;  4LR8 A;  3ED4 A;  4LR7 A;  3NVL A;  5TJ3 A;  3KD8 A;  5L0B A;  5LQQ A;  5GRR A;  4UOP A;  2W5S A;  1Y7A A;  2W8D A;  3DYC A;  3BDG B;  4LR2 A;  3B5Q A;  1ALH A;  4UPL A;  2XRG A;  1Y6V A;  1FSU A;  4ZG9 A;  1KHN A;  4UPI A;  4QAX A;  5K4P A;  3MK1 A;  5C66 A;  4MY4 A;  4GTX A;  1KH5 A;  3NKN A;  3OT9 A;  1ALK A;  2GLQ A;  3IDD A;  1AJC A;  3UNY A;  1ELY A;  4KAV A;  4KM4 A;  4MHX A;  3WAY A;  1O99 A;  4KJG A;  3NKP A;  5DLV A;  2IFY A;  3WAV A;  3M8Y A;  4NWX A;  3T02 A;  2ANH A;  4LRD A;  1EJJ A;  1AJA A;  1ELX A;  1URB A;  1AJB A;  5LIA A;  2IUC A;  3UN3 A;  3UN5 A;  4UPH A;  3SZY A;  1HJK A;  4LRC A;  4MIV A;  1EW9 A;  1HQA A;  3MK2 A;  1ED9 A;  2GSU A;  1ZEF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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