2W5QA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
total genus 167
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5qA02
1FSUA 4LR2A 1ANJA 1ZEDA 3NKMA 3MK0A 3WAWA 4UPIA 4LRCA 2W5XA 1HDHA 1KHLA 5GOVA 4CXSA 3UN3A 2IFYA 5KXAA 4FDIA 3T00A 1KH7A 5AJ9A 1E33P 1SHNA 3UN2A 4YR1A 1B8JA 1AJDA 4KJDA 3NKQA 4LR7A 3DPCA 4ZG6A 4GTWA 1EI6A 5GRRA 3B5QA 1EW9A 4MIVA 4NWXA 5IJSA 5L0EA 4ZG7A 3UO0A 3TG0A 2X98A 1KH5A 3TWZA 4GTXA 5LIAA 1Y7AA 2W5RA 3SZYA 3LXQA 4MHXA 3UNYA 3TX0A 5L0BA 3Q3QA 2G9YA 1AUKA 4UORA 4LRBA 5EGEA 4LRAA 4TN0A 1HQAA 3IGYB 5INHA 4KJGA 3WAVA 1O99A 4ZGAA 4CYRA 1E2SP 4KAVA 1ANIA 4LREA 1ELXA 2VQRA 4GTZA 1HJKA 4CYSA 3NKNA 4ZG9A 1KHKA 2ZKTA 4KM4A 3NKRA 1O98A 3KD8A 1KHNA 4UPKA 3NKOA 3T01A 3M8YA 3NVLA 4CXUA 1ZEBA 3WAYA 1EW2A 2W5TA 2GSNA 4KAYA 5TJ3A 5L0KA 1ALJA 4LRDA 1Y6VA 2QZUA 3M8ZA 3UN5A 1KHJA 1KH4A 1SHQA 2IUCB 1ED8A 2XR9A 3BDGA 1AJAA 3M7VA 1KH9A 5HRTA 2IUCA 4LRFA 5K4PA 3WBHA 3ED4A 3WAXA 1URAA 2W8SA 5IJQA 5DLVA 1E3CP 4NWJA 1ED9A 5LQQA 1EQJA 5DLTA 3DYCA 4LR8A 5DLWA 3A52A 2W5WA 2GA3A 1EJJA 2XRGA 3SZZA 3MK2A 2GSOA 5LRMA 4LQYA 4N7TA 4FDJA 4MY4A 3OT9A 1ALKA 1K7HA 3IDDA 2W8DA 5EGHA 4LR9A 2GSUA 1ELYA 5C66A 1N2LA 2W5QA 2ANHA 1N2KA 4UPLA 4GTYA 2W5SA 1ELZA 4QAXA 1ZEFA 2D1GA 3BDGB 4CXKA 5LRNA 1URBA 3BDFA 1ALHA 1EW8A 1AJCA 2GLQA 3NKPA 3CMRA 3BDHA 3E2DA 3T02A 2W5VA 4UOOA 2RH6A 3IGZB 1P49A 3M8WA 4UPHA 3MK1A 1ALIA 1AJBA 4UOPA 4B56A 1E1ZP
chains in the Genus database with same CATH superfamily
1FSUA 4LR2A 1ANJA 1ZEDA 3NKMA 3MK0A 3WAWA 4UPIA 4LRCA 2W5XA 1HDHA 1KHLA 5GOVA 4CXSA 3UN3A 2IFYA 5KXAA 4FDIA 3T00A 1KH7A 5AJ9A 1E33P 1SHNA 3UN2A 4YR1A 1B8JA 1AJDA 4KJDA 3NKQA 4LR7A 3DPCA 4ZG6A 4GTWA 1EI6A 5GRRA 3B5QA 1EW9A 4MIVA 4NWXA 5IJSA 5L0EA 4ZG7A 3UO0A 3TG0A 2X98A 1KH5A 3TWZA 4GTXA 5LIAA 1Y7AA 2W5RA 3SZYA 3LXQA 4MHXA 3UNYA 3TX0A 5L0BA 3Q3QA 2G9YA 1AUKA 4UORA 4LRBA 5EGEA 4LRAA 4TN0A 1HQAA 3IGYB 5INHA 4KJGA 3WAVA 1O99A 4ZGAA 4CYRA 1E2SP 4KAVA 1ANIA 4LREA 1ELXA 2VQRA 4GTZA 1HJKA 4CYSA 3NKNA 4ZG9A 1KHKA 2ZKTA 4KM4A 3NKRA 1O98A 3KD8A 1KHNA 4UPKA 3NKOA 3T01A 3M8YA 3NVLA 4CXUA 1ZEBA 3WAYA 1EW2A 2W5TA 2GSNA 4KAYA 5TJ3A 5L0KA 1ALJA 4LRDA 1Y6VA 2QZUA 3M8ZA 3UN5A 1KHJA 1KH4A 1SHQA 2IUCB 1ED8A 2XR9A 3BDGA 1AJAA 3M7VA 1KH9A 5HRTA 2IUCA 4LRFA 5K4PA 3WBHA 3ED4A 3WAXA 1URAA 2W8SA 5IJQA 5DLVA 1E3CP 4NWJA 1ED9A 5LQQA 1EQJA 5DLTA 3DYCA 4LR8A 5DLWA 3A52A 2W5WA 2GA3A 1EJJA 2XRGA 3SZZA 3MK2A 2GSOA 5LRMA 4LQYA 4N7TA 4FDJA 4MY4A 3OT9A 1ALKA 1K7HA 3IDDA 2W8DA 5EGHA 4LR9A 2GSUA 1ELYA 5C66A 1N2LA 2W5QA 2ANHA 1N2KA 4UPLA 4GTYA 2W5SA 1ELZA 4QAXA 1ZEFA 2D1GA 3BDGB 4CXKA 5LRNA 1URBA 3BDFA 1ALHA 1EW8A 1AJCA 2GLQA 3NKPA 3CMRA 3BDHA 3E2DA 3T02A 2W5VA 4UOOA 2RH6A 3IGZB 1P49A 3M8WA 4UPHA 3MK1A 1ALIA 1AJBA 4UOPA 4B56A 1E1ZP
chains in the Genus database with same CATH topology
1FSUA 4LR2A 1ANJA 1ZEDA 3NKMA 3MK0A 3WAWA 4UPIA 4LRCA 2W5XA 1HDHA 1KHLA 5GOVA 4CXSA 3UN3A 2IFYA 5KXAA 4FDIA 3T00A 1KH7A 5AJ9A 1E33P 1SHNA 3UN2A 4YR1A 1B8JA 1AJDA 4KJDA 3NKQA 4LR7A 3DPCA 4ZG6A 4GTWA 1EI6A 5GRRA 3B5QA 1EW9A 4MIVA 4NWXA 5IJSA 5L0EA 4ZG7A 3UO0A 3TG0A 2X98A 1KH5A 3TWZA 4GTXA 5LIAA 1Y7AA 2W5RA 3SZYA 3LXQA 4MHXA 3UNYA 3TX0A 5L0BA 3Q3QA 2G9YA 1AUKA 4UORA 4LRBA 5EGEA 4LRAA 4TN0A 1HQAA 3IGYB 5INHA 4KJGA 3WAVA 1O99A 4ZGAA 4CYRA 1E2SP 4KAVA 1ANIA 4LREA 1ELXA 2VQRA 4GTZA 1HJKA 4CYSA 3NKNA 4ZG9A 1KHKA 2ZKTA 4KM4A 3NKRA 1O98A 3KD8A 1KHNA 4UPKA 3NKOA 3T01A 3M8YA 3NVLA 4CXUA 1ZEBA 3WAYA 1EW2A 2W5TA 2GSNA 4KAYA 5TJ3A 5L0KA 1ALJA 4LRDA 1Y6VA 2QZUA 3M8ZA 3UN5A 1KHJA 1KH4A 1SHQA 2IUCB 1ED8A 2XR9A 3BDGA 1AJAA 3M7VA 1KH9A 5HRTA 2IUCA 4LRFA 5K4PA 3WBHA 3ED4A 3WAXA 1URAA 2W8SA 5IJQA 5DLVA 1E3CP 4NWJA 1ED9A 5LQQA 1EQJA 5DLTA 3DYCA 4LR8A 5DLWA 3A52A 2W5WA 2GA3A 1EJJA 2XRGA 3SZZA 3MK2A 2GSOA 5LRMA 4LQYA 4N7TA 4FDJA 4MY4A 3OT9A 1ALKA 1K7HA 3IDDA 2W8DA 5EGHA 4LR9A 2GSUA 1ELYA 5C66A 1N2LA 2W5QA 2ANHA 1N2KA 4UPLA 4GTYA 2W5SA 1ELZA 4QAXA 1ZEFA 2D1GA 3BDGB 4CXKA 5LRNA 1URBA 3BDFA 1ALHA 1EW8A 1AJCA 2GLQA 3NKPA 3CMRA 3BDHA 3E2DA 3T02A 2W5VA 4UOOA 2RH6A 3IGZB 1P49A 3M8WA 4UPHA 3MK1A 1ALIA 1AJBA 4UOPA 4B56A 1E1ZP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FSU A;  4LR2 A;  1ANJ A;  1ZED A;  3NKM A;  3MK0 A;  3WAW A;  4UPI A;  4LRC A;  2W5X A;  1HDH A;  1KHL A;  5GOV A;  4CXS A;  3UN3 A;  2IFY A;  5KXA A;  4FDI A;  3T00 A;  1KH7 A;  5AJ9 A;  1E33 P;  1SHN A;  3UN2 A;  4YR1 A;  1B8J A;  1AJD A;  4KJD A;  3NKQ A;  4LR7 A;  3DPC A;  4ZG6 A;  4GTW A;  1EI6 A;  5GRR A;  3B5Q A;  1EW9 A;  4MIV A;  4NWX A;  5IJS A;  5L0E A;  4ZG7 A;  3UO0 A;  3TG0 A;  2X98 A;  1KH5 A;  3TWZ A;  4GTX A;  5LIA A;  1Y7A A;  2W5R A;  3SZY A;  3LXQ A;  4MHX A;  3UNY A;  3TX0 A;  5L0B A;  3Q3Q A;  2G9Y A;  1AUK A;  4UOR A;  4LRB A;  5EGE A;  4LRA A;  4TN0 A;  1HQA A;  3IGY B;  5INH A;  4KJG A;  3WAV A;  1O99 A;  4ZGA A;  4CYR A;  1E2S P;  4KAV A;  1ANI A;  4LRE A;  1ELX A;  2VQR A;  4GTZ A;  1HJK A;  4CYS A;  3NKN A;  4ZG9 A;  1KHK A;  2ZKT A;  4KM4 A;  3NKR A;  1O98 A;  3KD8 A;  1KHN A;  4UPK A;  3NKO A;  3T01 A;  3M8Y A;  3NVL A;  4CXU A;  1ZEB A;  3WAY A;  1EW2 A;  2W5T A;  2GSN A;  4KAY A;  5TJ3 A;  5L0K A;  1ALJ A;  4LRD A;  1Y6V A;  2QZU A;  3M8Z A;  3UN5 A;  1KHJ A;  1KH4 A;  1SHQ A;  2IUC B;  1ED8 A;  2XR9 A;  3BDG A;  1AJA A;  3M7V A;  1KH9 A;  5HRT A;  2IUC A;  4LRF A;  5K4P A;  3WBH A;  3ED4 A;  3WAX A;  1URA A;  2W8S A;  5IJQ A;  5DLV A;  1E3C P;  4NWJ A;  1ED9 A;  5LQQ A;  1EQJ A;  5DLT A;  3DYC A;  4LR8 A;  5DLW A;  3A52 A;  2W5W A;  2GA3 A;  1EJJ A;  2XRG A;  3SZZ A;  3MK2 A;  2GSO A;  5LRM A;  4LQY A;  4N7T A;  4FDJ A;  4MY4 A;  3OT9 A;  1ALK A;  1K7H A;  3IDD A;  2W8D A;  5EGH A;  4LR9 A;  2GSU A;  1ELY A;  5C66 A;  1N2L A;  2W5Q A;  2ANH A;  1N2K A;  4UPL A;  4GTY A;  2W5S A;  1ELZ A;  4QAX A;  1ZEF A;  2D1G A;  3BDG B;  4CXK A;  5LRN A;  1URB A;  3BDF A;  1ALH A;  1EW8 A;  1AJC A;  2GLQ A;  3NKP A;  3CMR A;  3BDH A;  3E2D A;  3T02 A;  2W5V A;  4UOO A;  2RH6 A;  3IGZ B;  1P49 A;  3M8W A;  4UPH A;  3MK1 A;  1ALI A;  1AJB A;  4UOP A;  4B56 A;  1E1Z P; 
#chains in the Genus database with same CATH topology
 1FSU A;  4LR2 A;  1ANJ A;  1ZED A;  3NKM A;  3MK0 A;  3WAW A;  4UPI A;  4LRC A;  2W5X A;  1HDH A;  1KHL A;  5GOV A;  4CXS A;  3UN3 A;  2IFY A;  5KXA A;  4FDI A;  3T00 A;  1KH7 A;  5AJ9 A;  1E33 P;  1SHN A;  3UN2 A;  4YR1 A;  1B8J A;  1AJD A;  4KJD A;  3NKQ A;  4LR7 A;  3DPC A;  4ZG6 A;  4GTW A;  1EI6 A;  5GRR A;  3B5Q A;  1EW9 A;  4MIV A;  4NWX A;  5IJS A;  5L0E A;  4ZG7 A;  3UO0 A;  3TG0 A;  2X98 A;  1KH5 A;  3TWZ A;  4GTX A;  5LIA A;  1Y7A A;  2W5R A;  3SZY A;  3LXQ A;  4MHX A;  3UNY A;  3TX0 A;  5L0B A;  3Q3Q A;  2G9Y A;  1AUK A;  4UOR A;  4LRB A;  5EGE A;  4LRA A;  4TN0 A;  1HQA A;  3IGY B;  5INH A;  4KJG A;  3WAV A;  1O99 A;  4ZGA A;  4CYR A;  1E2S P;  4KAV A;  1ANI A;  4LRE A;  1ELX A;  2VQR A;  4GTZ A;  1HJK A;  4CYS A;  3NKN A;  4ZG9 A;  1KHK A;  2ZKT A;  4KM4 A;  3NKR A;  1O98 A;  3KD8 A;  1KHN A;  4UPK A;  3NKO A;  3T01 A;  3M8Y A;  3NVL A;  4CXU A;  1ZEB A;  3WAY A;  1EW2 A;  2W5T A;  2GSN A;  4KAY A;  5TJ3 A;  5L0K A;  1ALJ A;  4LRD A;  1Y6V A;  2QZU A;  3M8Z A;  3UN5 A;  1KHJ A;  1KH4 A;  1SHQ A;  2IUC B;  1ED8 A;  2XR9 A;  3BDG A;  1AJA A;  3M7V A;  1KH9 A;  5HRT A;  2IUC A;  4LRF A;  5K4P A;  3WBH A;  3ED4 A;  3WAX A;  1URA A;  2W8S A;  5IJQ A;  5DLV A;  1E3C P;  4NWJ A;  1ED9 A;  5LQQ A;  1EQJ A;  5DLT A;  3DYC A;  4LR8 A;  5DLW A;  3A52 A;  2W5W A;  2GA3 A;  1EJJ A;  2XRG A;  3SZZ A;  3MK2 A;  2GSO A;  5LRM A;  4LQY A;  4N7T A;  4FDJ A;  4MY4 A;  3OT9 A;  1ALK A;  1K7H A;  3IDD A;  2W8D A;  5EGH A;  4LR9 A;  2GSU A;  1ELY A;  5C66 A;  1N2L A;  2W5Q A;  2ANH A;  1N2K A;  4UPL A;  4GTY A;  2W5S A;  1ELZ A;  4QAX A;  1ZEF A;  2D1G A;  3BDG B;  4CXK A;  5LRN A;  1URB A;  3BDF A;  1ALH A;  1EW8 A;  1AJC A;  2GLQ A;  3NKP A;  3CMR A;  3BDH A;  3E2D A;  3T02 A;  2W5V A;  4UOO A;  2RH6 A;  3IGZ B;  1P49 A;  3M8W A;  4UPH A;  3MK1 A;  1ALI A;  1AJB A;  4UOP A;  4B56 A;  1E1Z P; 
#chains in the Genus database with same CATH homology
 1FSU A;  4LR2 A;  1ANJ A;  1ZED A;  3NKM A;  3MK0 A;  3WAW A;  4UPI A;  4LRC A;  2W5X A;  1HDH A;  1KHL A;  5GOV A;  4CXS A;  3UN3 A;  2IFY A;  5KXA A;  4FDI A;  3T00 A;  1KH7 A;  5AJ9 A;  1E33 P;  1SHN A;  3UN2 A;  4YR1 A;  1B8J A;  1AJD A;  4KJD A;  3NKQ A;  4LR7 A;  3DPC A;  4ZG6 A;  4GTW A;  1EI6 A;  5GRR A;  3B5Q A;  1EW9 A;  4MIV A;  4NWX A;  5IJS A;  5L0E A;  4ZG7 A;  3UO0 A;  3TG0 A;  2X98 A;  1KH5 A;  3TWZ A;  4GTX A;  5LIA A;  1Y7A A;  2W5R A;  3SZY A;  3LXQ A;  4MHX A;  3UNY A;  3TX0 A;  5L0B A;  3Q3Q A;  2G9Y A;  1AUK A;  4UOR A;  4LRB A;  5EGE A;  4LRA A;  4TN0 A;  1HQA A;  3IGY B;  5INH A;  4KJG A;  3WAV A;  1O99 A;  4ZGA A;  4CYR A;  1E2S P;  4KAV A;  1ANI A;  4LRE A;  1ELX A;  2VQR A;  4GTZ A;  1HJK A;  4CYS A;  3NKN A;  4ZG9 A;  1KHK A;  2ZKT A;  4KM4 A;  3NKR A;  1O98 A;  3KD8 A;  1KHN A;  4UPK A;  3NKO A;  3T01 A;  3M8Y A;  3NVL A;  4CXU A;  1ZEB A;  3WAY A;  1EW2 A;  2W5T A;  2GSN A;  4KAY A;  5TJ3 A;  5L0K A;  1ALJ A;  4LRD A;  1Y6V A;  2QZU A;  3M8Z A;  3UN5 A;  1KHJ A;  1KH4 A;  1SHQ A;  2IUC B;  1ED8 A;  2XR9 A;  3BDG A;  1AJA A;  3M7V A;  1KH9 A;  5HRT A;  2IUC A;  4LRF A;  5K4P A;  3WBH A;  3ED4 A;  3WAX A;  1URA A;  2W8S A;  5IJQ A;  5DLV A;  1E3C P;  4NWJ A;  1ED9 A;  5LQQ A;  1EQJ A;  5DLT A;  3DYC A;  4LR8 A;  5DLW A;  3A52 A;  2W5W A;  2GA3 A;  1EJJ A;  2XRG A;  3SZZ A;  3MK2 A;  2GSO A;  5LRM A;  4LQY A;  4N7T A;  4FDJ A;  4MY4 A;  3OT9 A;  1ALK A;  1K7H A;  3IDD A;  2W8D A;  5EGH A;  4LR9 A;  2GSU A;  1ELY A;  5C66 A;  1N2L A;  2W5Q A;  2ANH A;  1N2K A;  4UPL A;  4GTY A;  2W5S A;  1ELZ A;  4QAX A;  1ZEF A;  2D1G A;  3BDG B;  4CXK A;  5LRN A;  1URB A;  3BDF A;  1ALH A;  1EW8 A;  1AJC A;  2GLQ A;  3NKP A;  3CMR A;  3BDH A;  3E2D A;  3T02 A;  2W5V A;  4UOO A;  2RH6 A;  3IGZ B;  1P49 A;  3M8W A;  4UPH A;  3MK1 A;  1ALI A;  1AJB A;  4UOP A;  4B56 A;  1E1Z P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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