3NVLA

Crystal structure of phosphoglycerate mutase from trypanosoma brucei
Total Genus 199
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
199
Knots found
sequence length
549
structure length
549
Chain Sequence
LTLAAHKTLPRRKLVLVVLDGVGIGPRDEYDAVHVAKTPLMDALFNDPKHFRSICAHGTAVGLPTDADMGNSEVGHNALGAGRVVLQGASLVDDALESGEIFTSEGYRYLHGAFSQPGRTLHLIGLLSDGGVHSRDNQVYQILKHAGANGAKRIRVHALYDGRDVPDKTSFKFTDELEEVLAKLREGGCDARIASGGGRMFVTMDRYEADWSIVERGWRAQVLGEGRAFKSAREALTKFREEDANISDQYYPPFVIAGDDGRPIGTIEDGDAVLCFNFRGDRVIEMSRAFEEEEFDKFNRVRLPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRTSEEYLIGSGCNIFALSETQKFGHVTYFWNGNRSGKLSEERETFCEIPSDRVQFNQKPLMKSKEITDAAVDAIKSGKYDMIRINYPNGDMVGHTGDLKATITSLEAVDQSLQRLKEAVDSVNGVFLITADHGNSDDMVQRDKKGKPVRDAEGNLMPLTSHTLAPVPVFIGGAGLDPRVQMRTDLPRAGLANVTATFINLMGFEAPSDYEPSLIEVA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Crystal structure of phosphoglycerate mutase from Trypanosoma brucei.
pubmed doi rcsb
source organism Trypanosoma brucei
molecule tags Isomerase
total genus 199
structure length 549
sequence length 549
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2010-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3nvlA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 3nvlA02
1SHQA 4QAXA 2GSUA 4LR8A 1HJKA 3BDFA 5AJ9A 1KH9A 4FDJA 3NKQA 1O99A 2IUCA 3BDGA 1AJCA 1SHNA 1URBA 4ZG6A 2D1GA 3T00A 4LRDA 4CYSA 4GTZA 2GSOA 1ALHA 1E2SP 4YR1A 1P49A 4UPLA 1KHNA 2VQRA 4B56A 3WBHA 3TG0A 3WAYA 2XRGA 1E1ZP 1ED8A 4GTYA 4UORA 1E33P 3UO0A 4GTWA 3NKRA 4KM4A 2W5RA 4LRFA 3SZYA 3KD8A 4N7TA 3M8YA 4UPIA 1KHKA 1Y6VA 1ED9A 4MY4A 1K7HA 5GOVA 3OT9A 3MK1A 1N2LA 1ZEBA 3WAXA 4NWXA 4CXKA 4UOPA 2W8DA 5HRTA 1KHLA 2QZUA 2X98A 4UPKA 1KH4A 5K4PA 4MHXA 1AJAA 4MIVA 3TX0A 4ZG9A 1AJBA 4LR9A 3DYCA 3IDDA 5L0EA 5IJSA 5INHA 3T01A 3UN3A 2XR9A 3WAWA 4KJGA 4KAVA 4CXUA 4LRCA 2GA3A 3LXQA 2W5WA 3M8ZA 5EGEA 1KH5A 3SZZA 2ZKTA 4KJDA 4LRBA 3NKMA 1EW9A 2W5XA 5LIAA 1Y7AA 3B5QA 3M8WA 3UNYA 3WAVA 5C66A 5L0BA 1ANIA 4LREA 1EQJA 3A52A 1FSUA 5EGHA 3UN2A 5LRMA 1KHJA 3NKPA 5KXAA 1KH7A 3IGYB 1EI6A 4LR2A 1B8JA 4ZG7A 1N2KA 3UN5A 1E3CP 1ELXA 2RH6A 3M7VA 4ZGAA 4LR7A 3DPCA 4GTXA 5LRNA 1ALKA 3NKNA 3ED4A 1EW2A 5L0KA 3CMRA 5TJ3A 3IGZB 2G9YA 1ALJA 1ANJA 4FDIA 2IFYA 1HDHA 5DLTA 3MK2A 1HQAA 1ZEDA 1O98A 4UPHA 1AUKA 2ANHA 2W5QA 3Q3QA 4KAYA 3NVLA 5DLWA 3MK0A 4TN0A 1EW8A 2IUCB 3BDGB 4CYRA 4LRAA 3BDHA 2W5VA 2GLQA 5LQQA 1ALIA 4UOOA 5DLVA 1ELZA 2W5SA 2W8SA 3NKOA 4LQYA 2W5TA 3TWZA 5IJQA 1AJDA 3T02A 4CXSA 1URAA 2GSNA 4NWJA 5GRRA 1EJJA 3E2DA 1ELYA 1ZEFA
chains in the Genus database with same CATH superfamily
1SHQA 4QAXA 2GSUA 4LR8A 1HJKA 3BDFA 5AJ9A 1KH9A 4FDJA 3NKQA 1O99A 2IUCA 3BDGA 1AJCA 1SHNA 1URBA 4ZG6A 2D1GA 3T00A 4LRDA 4CYSA 4GTZA 2GSOA 1ALHA 1E2SP 4YR1A 1P49A 4UPLA 1KHNA 2VQRA 4B56A 3WBHA 3TG0A 3WAYA 2XRGA 1E1ZP 1ED8A 4GTYA 4UORA 1E33P 3UO0A 4GTWA 3NKRA 4KM4A 2W5RA 4LRFA 3SZYA 3KD8A 4N7TA 3M8YA 4UPIA 1KHKA 1Y6VA 1ED9A 4MY4A 1K7HA 5GOVA 3OT9A 3MK1A 1N2LA 1ZEBA 3WAXA 4NWXA 4CXKA 4UOPA 2W8DA 5HRTA 1KHLA 2QZUA 2X98A 4UPKA 1KH4A 5K4PA 4MHXA 1AJAA 4MIVA 3TX0A 4ZG9A 1AJBA 4LR9A 3DYCA 3IDDA 5L0EA 5IJSA 5INHA 3T01A 3UN3A 2XR9A 3WAWA 4KJGA 4KAVA 4CXUA 4LRCA 2GA3A 3LXQA 2W5WA 3M8ZA 5EGEA 1KH5A 3SZZA 2ZKTA 4KJDA 4LRBA 3NKMA 1EW9A 2W5XA 5LIAA 1Y7AA 3B5QA 3M8WA 3UNYA 3WAVA 5C66A 5L0BA 1ANIA 4LREA 1EQJA 3A52A 1FSUA 5EGHA 3UN2A 5LRMA 1KHJA 3NKPA 5KXAA 1KH7A 3IGYB 1EI6A 4LR2A 1B8JA 4ZG7A 1N2KA 3UN5A 1E3CP 1ELXA 2RH6A 3M7VA 4ZGAA 4LR7A 3DPCA 4GTXA 5LRNA 1ALKA 3NKNA 3ED4A 1EW2A 5L0KA 3CMRA 5TJ3A 3IGZB 2G9YA 1ALJA 1ANJA 4FDIA 2IFYA 1HDHA 5DLTA 3MK2A 1HQAA 1ZEDA 1O98A 4UPHA 1AUKA 2ANHA 2W5QA 3Q3QA 4KAYA 3NVLA 5DLWA 3MK0A 4TN0A 1EW8A 2IUCB 3BDGB 4CYRA 4LRAA 3BDHA 2W5VA 2GLQA 5LQQA 1ALIA 4UOOA 5DLVA 1ELZA 2W5SA 2W8SA 3NKOA 4LQYA 2W5TA 3TWZA 5IJQA 1AJDA 3T02A 4CXSA 1URAA 2GSNA 4NWJA 5GRRA 1EJJA 3E2DA 1ELYA 1ZEFA
chains in the Genus database with same CATH topology
1SHQA 4QAXA 2GSUA 4LR8A 1HJKA 3BDFA 5AJ9A 1KH9A 4FDJA 3NKQA 1O99A 2IUCA 3BDGA 1AJCA 1SHNA 1URBA 4ZG6A 2D1GA 3T00A 4LRDA 4CYSA 4GTZA 2GSOA 1ALHA 1E2SP 4YR1A 1P49A 4UPLA 1KHNA 2VQRA 4B56A 3WBHA 3TG0A 3WAYA 2XRGA 1E1ZP 1ED8A 4GTYA 4UORA 1E33P 3UO0A 4GTWA 3NKRA 4KM4A 2W5RA 4LRFA 3SZYA 3KD8A 4N7TA 3M8YA 4UPIA 1KHKA 1Y6VA 1ED9A 4MY4A 1K7HA 5GOVA 3OT9A 3MK1A 1N2LA 1ZEBA 3WAXA 4NWXA 4CXKA 4UOPA 2W8DA 5HRTA 1KHLA 2QZUA 2X98A 4UPKA 1KH4A 5K4PA 4MHXA 1AJAA 4MIVA 3TX0A 4ZG9A 1AJBA 4LR9A 3DYCA 3IDDA 5L0EA 5IJSA 5INHA 3T01A 3UN3A 2XR9A 3WAWA 4KJGA 4KAVA 4CXUA 4LRCA 2GA3A 3LXQA 2W5WA 3M8ZA 5EGEA 1KH5A 3SZZA 2ZKTA 4KJDA 4LRBA 3NKMA 1EW9A 2W5XA 5LIAA 1Y7AA 3B5QA 3M8WA 3UNYA 3WAVA 5C66A 5L0BA 1ANIA 4LREA 1EQJA 3A52A 1FSUA 5EGHA 3UN2A 5LRMA 1KHJA 3NKPA 5KXAA 1KH7A 3IGYB 1EI6A 4LR2A 1B8JA 4ZG7A 1N2KA 3UN5A 1E3CP 1ELXA 2RH6A 3M7VA 4ZGAA 4LR7A 3DPCA 4GTXA 5LRNA 1ALKA 3NKNA 3ED4A 1EW2A 5L0KA 3CMRA 5TJ3A 3IGZB 2G9YA 1ALJA 1ANJA 4FDIA 2IFYA 1HDHA 5DLTA 3MK2A 1HQAA 1ZEDA 1O98A 4UPHA 1AUKA 2ANHA 2W5QA 3Q3QA 4KAYA 3NVLA 5DLWA 3MK0A 4TN0A 1EW8A 2IUCB 3BDGB 4CYRA 4LRAA 3BDHA 2W5VA 2GLQA 5LQQA 1ALIA 4UOOA 5DLVA 1ELZA 2W5SA 2W8SA 3NKOA 4LQYA 2W5TA 3TWZA 5IJQA 1AJDA 3T02A 4CXSA 1URAA 2GSNA 4NWJA 5GRRA 1EJJA 3E2DA 1ELYA 1ZEFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SHQ A;  4QAX A;  2GSU A;  4LR8 A;  1HJK A;  3BDF A;  5AJ9 A;  1KH9 A;  4FDJ A;  3NKQ A;  1O99 A;  2IUC A;  3BDG A;  1AJC A;  1SHN A;  1URB A;  4ZG6 A;  2D1G A;  3T00 A;  4LRD A;  4CYS A;  4GTZ A;  2GSO A;  1ALH A;  1E2S P;  4YR1 A;  1P49 A;  4UPL A;  1KHN A;  2VQR A;  4B56 A;  3WBH A;  3TG0 A;  3WAY A;  2XRG A;  1E1Z P;  1ED8 A;  4GTY A;  4UOR A;  1E33 P;  3UO0 A;  4GTW A;  3NKR A;  4KM4 A;  2W5R A;  4LRF A;  3SZY A;  3KD8 A;  4N7T A;  3M8Y A;  4UPI A;  1KHK A;  1Y6V A;  1ED9 A;  4MY4 A;  1K7H A;  5GOV A;  3OT9 A;  3MK1 A;  1N2L A;  1ZEB A;  3WAX A;  4NWX A;  4CXK A;  4UOP A;  2W8D A;  5HRT A;  1KHL A;  2QZU A;  2X98 A;  4UPK A;  1KH4 A;  5K4P A;  4MHX A;  1AJA A;  4MIV A;  3TX0 A;  4ZG9 A;  1AJB A;  4LR9 A;  3DYC A;  3IDD A;  5L0E A;  5IJS A;  5INH A;  3T01 A;  3UN3 A;  2XR9 A;  3WAW A;  4KJG A;  4KAV A;  4CXU A;  4LRC A;  2GA3 A;  3LXQ A;  2W5W A;  3M8Z A;  5EGE A;  1KH5 A;  3SZZ A;  2ZKT A;  4KJD A;  4LRB A;  3NKM A;  1EW9 A;  2W5X A;  5LIA A;  1Y7A A;  3B5Q A;  3M8W A;  3UNY A;  3WAV A;  5C66 A;  5L0B A;  1ANI A;  4LRE A;  1EQJ A;  3A52 A;  1FSU A;  5EGH A;  3UN2 A;  5LRM A;  1KHJ A;  3NKP A;  5KXA A;  1KH7 A;  3IGY B;  1EI6 A;  4LR2 A;  1B8J A;  4ZG7 A;  1N2K A;  3UN5 A;  1E3C P;  1ELX A;  2RH6 A;  3M7V A;  4ZGA A;  4LR7 A;  3DPC A;  4GTX A;  5LRN A;  1ALK A;  3NKN A;  3ED4 A;  1EW2 A;  5L0K A;  3CMR A;  5TJ3 A;  3IGZ B;  2G9Y A;  1ALJ A;  1ANJ A;  4FDI A;  2IFY A;  1HDH A;  5DLT A;  3MK2 A;  1HQA A;  1ZED A;  1O98 A;  4UPH A;  1AUK A;  2ANH A;  2W5Q A;  3Q3Q A;  4KAY A;  3NVL A;  5DLW A;  3MK0 A;  4TN0 A;  1EW8 A;  2IUC B;  3BDG B;  4CYR A;  4LRA A;  3BDH A;  2W5V A;  2GLQ A;  5LQQ A;  1ALI A;  4UOO A;  5DLV A;  1ELZ A;  2W5S A;  2W8S A;  3NKO A;  4LQY A;  2W5T A;  3TWZ A;  5IJQ A;  1AJD A;  3T02 A;  4CXS A;  1URA A;  2GSN A;  4NWJ A;  5GRR A;  1EJJ A;  3E2D A;  1ELY A;  1ZEF A; 
#chains in the Genus database with same CATH topology
 1SHQ A;  4QAX A;  2GSU A;  4LR8 A;  1HJK A;  3BDF A;  5AJ9 A;  1KH9 A;  4FDJ A;  3NKQ A;  1O99 A;  2IUC A;  3BDG A;  1AJC A;  1SHN A;  1URB A;  4ZG6 A;  2D1G A;  3T00 A;  4LRD A;  4CYS A;  4GTZ A;  2GSO A;  1ALH A;  1E2S P;  4YR1 A;  1P49 A;  4UPL A;  1KHN A;  2VQR A;  4B56 A;  3WBH A;  3TG0 A;  3WAY A;  2XRG A;  1E1Z P;  1ED8 A;  4GTY A;  4UOR A;  1E33 P;  3UO0 A;  4GTW A;  3NKR A;  4KM4 A;  2W5R A;  4LRF A;  3SZY A;  3KD8 A;  4N7T A;  3M8Y A;  4UPI A;  1KHK A;  1Y6V A;  1ED9 A;  4MY4 A;  1K7H A;  5GOV A;  3OT9 A;  3MK1 A;  1N2L A;  1ZEB A;  3WAX A;  4NWX A;  4CXK A;  4UOP A;  2W8D A;  5HRT A;  1KHL A;  2QZU A;  2X98 A;  4UPK A;  1KH4 A;  5K4P A;  4MHX A;  1AJA A;  4MIV A;  3TX0 A;  4ZG9 A;  1AJB A;  4LR9 A;  3DYC A;  3IDD A;  5L0E A;  5IJS A;  5INH A;  3T01 A;  3UN3 A;  2XR9 A;  3WAW A;  4KJG A;  4KAV A;  4CXU A;  4LRC A;  2GA3 A;  3LXQ A;  2W5W A;  3M8Z A;  5EGE A;  1KH5 A;  3SZZ A;  2ZKT A;  4KJD A;  4LRB A;  3NKM A;  1EW9 A;  2W5X A;  5LIA A;  1Y7A A;  3B5Q A;  3M8W A;  3UNY A;  3WAV A;  5C66 A;  5L0B A;  1ANI A;  4LRE A;  1EQJ A;  3A52 A;  1FSU A;  5EGH A;  3UN2 A;  5LRM A;  1KHJ A;  3NKP A;  5KXA A;  1KH7 A;  3IGY B;  1EI6 A;  4LR2 A;  1B8J A;  4ZG7 A;  1N2K A;  3UN5 A;  1E3C P;  1ELX A;  2RH6 A;  3M7V A;  4ZGA A;  4LR7 A;  3DPC A;  4GTX A;  5LRN A;  1ALK A;  3NKN A;  3ED4 A;  1EW2 A;  5L0K A;  3CMR A;  5TJ3 A;  3IGZ B;  2G9Y A;  1ALJ A;  1ANJ A;  4FDI A;  2IFY A;  1HDH A;  5DLT A;  3MK2 A;  1HQA A;  1ZED A;  1O98 A;  4UPH A;  1AUK A;  2ANH A;  2W5Q A;  3Q3Q A;  4KAY A;  3NVL A;  5DLW A;  3MK0 A;  4TN0 A;  1EW8 A;  2IUC B;  3BDG B;  4CYR A;  4LRA A;  3BDH A;  2W5V A;  2GLQ A;  5LQQ A;  1ALI A;  4UOO A;  5DLV A;  1ELZ A;  2W5S A;  2W8S A;  3NKO A;  4LQY A;  2W5T A;  3TWZ A;  5IJQ A;  1AJD A;  3T02 A;  4CXS A;  1URA A;  2GSN A;  4NWJ A;  5GRR A;  1EJJ A;  3E2D A;  1ELY A;  1ZEF A; 
#chains in the Genus database with same CATH homology
 1SHQ A;  4QAX A;  2GSU A;  4LR8 A;  1HJK A;  3BDF A;  5AJ9 A;  1KH9 A;  4FDJ A;  3NKQ A;  1O99 A;  2IUC A;  3BDG A;  1AJC A;  1SHN A;  1URB A;  4ZG6 A;  2D1G A;  3T00 A;  4LRD A;  4CYS A;  4GTZ A;  2GSO A;  1ALH A;  1E2S P;  4YR1 A;  1P49 A;  4UPL A;  1KHN A;  2VQR A;  4B56 A;  3WBH A;  3TG0 A;  3WAY A;  2XRG A;  1E1Z P;  1ED8 A;  4GTY A;  4UOR A;  1E33 P;  3UO0 A;  4GTW A;  3NKR A;  4KM4 A;  2W5R A;  4LRF A;  3SZY A;  3KD8 A;  4N7T A;  3M8Y A;  4UPI A;  1KHK A;  1Y6V A;  1ED9 A;  4MY4 A;  1K7H A;  5GOV A;  3OT9 A;  3MK1 A;  1N2L A;  1ZEB A;  3WAX A;  4NWX A;  4CXK A;  4UOP A;  2W8D A;  5HRT A;  1KHL A;  2QZU A;  2X98 A;  4UPK A;  1KH4 A;  5K4P A;  4MHX A;  1AJA A;  4MIV A;  3TX0 A;  4ZG9 A;  1AJB A;  4LR9 A;  3DYC A;  3IDD A;  5L0E A;  5IJS A;  5INH A;  3T01 A;  3UN3 A;  2XR9 A;  3WAW A;  4KJG A;  4KAV A;  4CXU A;  4LRC A;  2GA3 A;  3LXQ A;  2W5W A;  3M8Z A;  5EGE A;  1KH5 A;  3SZZ A;  2ZKT A;  4KJD A;  4LRB A;  3NKM A;  1EW9 A;  2W5X A;  5LIA A;  1Y7A A;  3B5Q A;  3M8W A;  3UNY A;  3WAV A;  5C66 A;  5L0B A;  1ANI A;  4LRE A;  1EQJ A;  3A52 A;  1FSU A;  5EGH A;  3UN2 A;  5LRM A;  1KHJ A;  3NKP A;  5KXA A;  1KH7 A;  3IGY B;  1EI6 A;  4LR2 A;  1B8J A;  4ZG7 A;  1N2K A;  3UN5 A;  1E3C P;  1ELX A;  2RH6 A;  3M7V A;  4ZGA A;  4LR7 A;  3DPC A;  4GTX A;  5LRN A;  1ALK A;  3NKN A;  3ED4 A;  1EW2 A;  5L0K A;  3CMR A;  5TJ3 A;  3IGZ B;  2G9Y A;  1ALJ A;  1ANJ A;  4FDI A;  2IFY A;  1HDH A;  5DLT A;  3MK2 A;  1HQA A;  1ZED A;  1O98 A;  4UPH A;  1AUK A;  2ANH A;  2W5Q A;  3Q3Q A;  4KAY A;  3NVL A;  5DLW A;  3MK0 A;  4TN0 A;  1EW8 A;  2IUC B;  3BDG B;  4CYR A;  4LRA A;  3BDH A;  2W5V A;  2GLQ A;  5LQQ A;  1ALI A;  4UOO A;  5DLV A;  1ELZ A;  2W5S A;  2W8S A;  3NKO A;  4LQY A;  2W5T A;  3TWZ A;  5IJQ A;  1AJD A;  3T02 A;  4CXS A;  1URA A;  2GSN A;  4NWJ A;  5GRR A;  1EJJ A;  3E2D A;  1ELY A;  1ZEF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...