3NVLA

Crystal structure of phosphoglycerate mutase from trypanosoma brucei
Total Genus 199
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
199
Knots found
sequence length
549
structure length
549
Chain Sequence
LTLAAHKTLPRRKLVLVVLDGVGIGPRDEYDAVHVAKTPLMDALFNDPKHFRSICAHGTAVGLPTDADMGNSEVGHNALGAGRVVLQGASLVDDALESGEIFTSEGYRYLHGAFSQPGRTLHLIGLLSDGGVHSRDNQVYQILKHAGANGAKRIRVHALYDGRDVPDKTSFKFTDELEEVLAKLREGGCDARIASGGGRMFVTMDRYEADWSIVERGWRAQVLGEGRAFKSAREALTKFREEDANISDQYYPPFVIAGDDGRPIGTIEDGDAVLCFNFRGDRVIEMSRAFEEEEFDKFNRVRLPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRTSEEYLIGSGCNIFALSETQKFGHVTYFWNGNRSGKLSEERETFCEIPSDRVQFNQKPLMKSKEITDAAVDAIKSGKYDMIRINYPNGDMVGHTGDLKATITSLEAVDQSLQRLKEAVDSVNGVFLITADHGNSDDMVQRDKKGKPVRDAEGNLMPLTSHTLAPVPVFIGGAGLDPRVQMRTDLPRAGLANVTATFINLMGFEAPSDYEPSLIEVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Crystal structure of phosphoglycerate mutase from Trypanosoma brucei.
pubmed doi rcsb
source organism Trypanosoma brucei
molecule tags Isomerase
total genus 199
structure length 549
sequence length 549
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2010-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3nvlA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 3nvlA02
1ALHA 5DLTA 2VQRA 1EI6A 1E3CP 1SHNA 3BDGB 2W5QA 3T02A 3UNYA 3NVLA 2XR9A 4FDJA 1AJAA 1URBA 3T00A 1KH7A 3UN3A 1B8JA 3NKPA 1HQAA 3M8ZA 5LIAA 3TWZA 2GLQA 5IJQA 5L0KA 1AJCA 4CXSA 1EW8A 1ELXA 5IJSA 4N7TA 4B56A 1ANJA 4KJDA 4CYRA 4KAYA 2W8SA 2XRGA 4TN0A 4QAXA 3NKQA 1KH5A 1KHNA 4GTXA 3WBHA 4LRDA 2ANHA 1ED9A 1ZEBA 3NKOA 5K4PA 4MHXA 3E2DA 4MIVA 1AJBA 3BDGA 4LRAA 2W8DA 4UORA 1SHQA 3UN5A 5LRMA 2D1GA 3TX0A 4LRBA 4UPLA 3TG0A 4UPIA 1EJJA 2GSOA 4CYSA 1ED8A 3SZYA 4NWJA 5DLWA 3IGZB 3BDFA 4LR2A 2GSNA 2W5SA 5LQQA 1KHJA 4MY4A 2RH6A 1EW2A 5DLVA 5L0EA 4KM4A 1O99A 3KD8A 4KJGA 3WAYA 2X98A 3A52A 4FDIA 4ZG7A 2G9YA 5KXAA 2ZKTA 3NKMA 3NKNA 1E2SP 2QZUA 3ED4A 1EQJA 4LQYA 4GTZA 4UPHA 3DPCA 5EGHA 5EGEA 5TJ3A 1HDHA 3T01A 4ZG6A 1KHLA 1K7HA 2W5TA 5C66A 1E33P 3BDHA 1ANIA 4LREA 3WAWA 4LRCA 2W5VA 4UPKA 5L0BA 4YR1A 3NKRA 3IDDA 2W5RA 3MK1A 1N2KA 2GA3A 4CXUA 3MK2A 3SZZA 3UN2A 1N2LA 2GSUA 1EW9A 4KAVA 4LR8A 1KHKA 1HJKA 2IUCB 4GTYA 1URAA 3M7VA 3B5QA 4LR7A 4LRFA 4NWXA 5AJ9A 5HRTA 2W5XA 3Q3QA 1P49A 1AUKA 4ZG9A 3M8YA 5INHA 1ZEFA 2W5WA 1ALIA 1KH9A 1KH4A 1ELZA 1O98A 3OT9A 3CMRA 1Y7AA 3MK0A 4UOPA 1ALJA 1Y6VA 5GOVA 3UO0A 4LR9A 3WAVA 5GRRA 3LXQA 4ZGAA 4UOOA 1E1ZP 4GTWA 3M8WA 3IGYB 2IFYA 1AJDA 2IUCA 4CXKA 1ALKA 5LRNA 3DYCA 1FSUA 1ZEDA 3WAXA 1ELYA
chains in the Genus database with same CATH superfamily
1ALHA 5DLTA 2VQRA 1EI6A 1E3CP 1SHNA 3BDGB 2W5QA 3T02A 3UNYA 3NVLA 2XR9A 4FDJA 1AJAA 1URBA 3T00A 1KH7A 3UN3A 1B8JA 3NKPA 1HQAA 3M8ZA 5LIAA 3TWZA 2GLQA 5IJQA 5L0KA 1AJCA 4CXSA 1EW8A 1ELXA 5IJSA 4N7TA 4B56A 1ANJA 4KJDA 4CYRA 4KAYA 2W8SA 2XRGA 4TN0A 4QAXA 3NKQA 1KH5A 1KHNA 4GTXA 3WBHA 4LRDA 2ANHA 1ED9A 1ZEBA 3NKOA 5K4PA 4MHXA 3E2DA 4MIVA 1AJBA 3BDGA 4LRAA 2W8DA 4UORA 1SHQA 3UN5A 5LRMA 2D1GA 3TX0A 4LRBA 4UPLA 3TG0A 4UPIA 1EJJA 2GSOA 4CYSA 1ED8A 3SZYA 4NWJA 5DLWA 3IGZB 3BDFA 4LR2A 2GSNA 2W5SA 5LQQA 1KHJA 4MY4A 2RH6A 1EW2A 5DLVA 5L0EA 4KM4A 1O99A 3KD8A 4KJGA 3WAYA 2X98A 3A52A 4FDIA 4ZG7A 2G9YA 5KXAA 2ZKTA 3NKMA 3NKNA 1E2SP 2QZUA 3ED4A 1EQJA 4LQYA 4GTZA 4UPHA 3DPCA 5EGHA 5EGEA 5TJ3A 1HDHA 3T01A 4ZG6A 1KHLA 1K7HA 2W5TA 5C66A 1E33P 3BDHA 1ANIA 4LREA 3WAWA 4LRCA 2W5VA 4UPKA 5L0BA 4YR1A 3NKRA 3IDDA 2W5RA 3MK1A 1N2KA 2GA3A 4CXUA 3MK2A 3SZZA 3UN2A 1N2LA 2GSUA 1EW9A 4KAVA 4LR8A 1KHKA 1HJKA 2IUCB 4GTYA 1URAA 3M7VA 3B5QA 4LR7A 4LRFA 4NWXA 5AJ9A 5HRTA 2W5XA 3Q3QA 1P49A 1AUKA 4ZG9A 3M8YA 5INHA 1ZEFA 2W5WA 1ALIA 1KH9A 1KH4A 1ELZA 1O98A 3OT9A 3CMRA 1Y7AA 3MK0A 4UOPA 1ALJA 1Y6VA 5GOVA 3UO0A 4LR9A 3WAVA 5GRRA 3LXQA 4ZGAA 4UOOA 1E1ZP 4GTWA 3M8WA 3IGYB 2IFYA 1AJDA 2IUCA 4CXKA 1ALKA 5LRNA 3DYCA 1FSUA 1ZEDA 3WAXA 1ELYA
chains in the Genus database with same CATH topology
1ALHA 5DLTA 2VQRA 1EI6A 1E3CP 1SHNA 3BDGB 2W5QA 3T02A 3UNYA 3NVLA 2XR9A 4FDJA 1AJAA 1URBA 3T00A 1KH7A 3UN3A 1B8JA 3NKPA 1HQAA 3M8ZA 5LIAA 3TWZA 2GLQA 5IJQA 5L0KA 1AJCA 4CXSA 1EW8A 1ELXA 5IJSA 4N7TA 4B56A 1ANJA 4KJDA 4CYRA 4KAYA 2W8SA 2XRGA 4TN0A 4QAXA 3NKQA 1KH5A 1KHNA 4GTXA 3WBHA 4LRDA 2ANHA 1ED9A 1ZEBA 3NKOA 5K4PA 4MHXA 3E2DA 4MIVA 1AJBA 3BDGA 4LRAA 2W8DA 4UORA 1SHQA 3UN5A 5LRMA 2D1GA 3TX0A 4LRBA 4UPLA 3TG0A 4UPIA 1EJJA 2GSOA 4CYSA 1ED8A 3SZYA 4NWJA 5DLWA 3IGZB 3BDFA 4LR2A 2GSNA 2W5SA 5LQQA 1KHJA 4MY4A 2RH6A 1EW2A 5DLVA 5L0EA 4KM4A 1O99A 3KD8A 4KJGA 3WAYA 2X98A 3A52A 4FDIA 4ZG7A 2G9YA 5KXAA 2ZKTA 3NKMA 3NKNA 1E2SP 2QZUA 3ED4A 1EQJA 4LQYA 4GTZA 4UPHA 3DPCA 5EGHA 5EGEA 5TJ3A 1HDHA 3T01A 4ZG6A 1KHLA 1K7HA 2W5TA 5C66A 1E33P 3BDHA 1ANIA 4LREA 3WAWA 4LRCA 2W5VA 4UPKA 5L0BA 4YR1A 3NKRA 3IDDA 2W5RA 3MK1A 1N2KA 2GA3A 4CXUA 3MK2A 3SZZA 3UN2A 1N2LA 2GSUA 1EW9A 4KAVA 4LR8A 1KHKA 1HJKA 2IUCB 4GTYA 1URAA 3M7VA 3B5QA 4LR7A 4LRFA 4NWXA 5AJ9A 5HRTA 2W5XA 3Q3QA 1P49A 1AUKA 4ZG9A 3M8YA 5INHA 1ZEFA 2W5WA 1ALIA 1KH9A 1KH4A 1ELZA 1O98A 3OT9A 3CMRA 1Y7AA 3MK0A 4UOPA 1ALJA 1Y6VA 5GOVA 3UO0A 4LR9A 3WAVA 5GRRA 3LXQA 4ZGAA 4UOOA 1E1ZP 4GTWA 3M8WA 3IGYB 2IFYA 1AJDA 2IUCA 4CXKA 1ALKA 5LRNA 3DYCA 1FSUA 1ZEDA 3WAXA 1ELYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ALH A;  5DLT A;  2VQR A;  1EI6 A;  1E3C P;  1SHN A;  3BDG B;  2W5Q A;  3T02 A;  3UNY A;  3NVL A;  2XR9 A;  4FDJ A;  1AJA A;  1URB A;  3T00 A;  1KH7 A;  3UN3 A;  1B8J A;  3NKP A;  1HQA A;  3M8Z A;  5LIA A;  3TWZ A;  2GLQ A;  5IJQ A;  5L0K A;  1AJC A;  4CXS A;  1EW8 A;  1ELX A;  5IJS A;  4N7T A;  4B56 A;  1ANJ A;  4KJD A;  4CYR A;  4KAY A;  2W8S A;  2XRG A;  4TN0 A;  4QAX A;  3NKQ A;  1KH5 A;  1KHN A;  4GTX A;  3WBH A;  4LRD A;  2ANH A;  1ED9 A;  1ZEB A;  3NKO A;  5K4P A;  4MHX A;  3E2D A;  4MIV A;  1AJB A;  3BDG A;  4LRA A;  2W8D A;  4UOR A;  1SHQ A;  3UN5 A;  5LRM A;  2D1G A;  3TX0 A;  4LRB A;  4UPL A;  3TG0 A;  4UPI A;  1EJJ A;  2GSO A;  4CYS A;  1ED8 A;  3SZY A;  4NWJ A;  5DLW A;  3IGZ B;  3BDF A;  4LR2 A;  2GSN A;  2W5S A;  5LQQ A;  1KHJ A;  4MY4 A;  2RH6 A;  1EW2 A;  5DLV A;  5L0E A;  4KM4 A;  1O99 A;  3KD8 A;  4KJG A;  3WAY A;  2X98 A;  3A52 A;  4FDI A;  4ZG7 A;  2G9Y A;  5KXA A;  2ZKT A;  3NKM A;  3NKN A;  1E2S P;  2QZU A;  3ED4 A;  1EQJ A;  4LQY A;  4GTZ A;  4UPH A;  3DPC A;  5EGH A;  5EGE A;  5TJ3 A;  1HDH A;  3T01 A;  4ZG6 A;  1KHL A;  1K7H A;  2W5T A;  5C66 A;  1E33 P;  3BDH A;  1ANI A;  4LRE A;  3WAW A;  4LRC A;  2W5V A;  4UPK A;  5L0B A;  4YR1 A;  3NKR A;  3IDD A;  2W5R A;  3MK1 A;  1N2K A;  2GA3 A;  4CXU A;  3MK2 A;  3SZZ A;  3UN2 A;  1N2L A;  2GSU A;  1EW9 A;  4KAV A;  4LR8 A;  1KHK A;  1HJK A;  2IUC B;  4GTY A;  1URA A;  3M7V A;  3B5Q A;  4LR7 A;  4LRF A;  4NWX A;  5AJ9 A;  5HRT A;  2W5X A;  3Q3Q A;  1P49 A;  1AUK A;  4ZG9 A;  3M8Y A;  5INH A;  1ZEF A;  2W5W A;  1ALI A;  1KH9 A;  1KH4 A;  1ELZ A;  1O98 A;  3OT9 A;  3CMR A;  1Y7A A;  3MK0 A;  4UOP A;  1ALJ A;  1Y6V A;  5GOV A;  3UO0 A;  4LR9 A;  3WAV A;  5GRR A;  3LXQ A;  4ZGA A;  4UOO A;  1E1Z P;  4GTW A;  3M8W A;  3IGY B;  2IFY A;  1AJD A;  2IUC A;  4CXK A;  1ALK A;  5LRN A;  3DYC A;  1FSU A;  1ZED A;  3WAX A;  1ELY A; 
#chains in the Genus database with same CATH topology
 1ALH A;  5DLT A;  2VQR A;  1EI6 A;  1E3C P;  1SHN A;  3BDG B;  2W5Q A;  3T02 A;  3UNY A;  3NVL A;  2XR9 A;  4FDJ A;  1AJA A;  1URB A;  3T00 A;  1KH7 A;  3UN3 A;  1B8J A;  3NKP A;  1HQA A;  3M8Z A;  5LIA A;  3TWZ A;  2GLQ A;  5IJQ A;  5L0K A;  1AJC A;  4CXS A;  1EW8 A;  1ELX A;  5IJS A;  4N7T A;  4B56 A;  1ANJ A;  4KJD A;  4CYR A;  4KAY A;  2W8S A;  2XRG A;  4TN0 A;  4QAX A;  3NKQ A;  1KH5 A;  1KHN A;  4GTX A;  3WBH A;  4LRD A;  2ANH A;  1ED9 A;  1ZEB A;  3NKO A;  5K4P A;  4MHX A;  3E2D A;  4MIV A;  1AJB A;  3BDG A;  4LRA A;  2W8D A;  4UOR A;  1SHQ A;  3UN5 A;  5LRM A;  2D1G A;  3TX0 A;  4LRB A;  4UPL A;  3TG0 A;  4UPI A;  1EJJ A;  2GSO A;  4CYS A;  1ED8 A;  3SZY A;  4NWJ A;  5DLW A;  3IGZ B;  3BDF A;  4LR2 A;  2GSN A;  2W5S A;  5LQQ A;  1KHJ A;  4MY4 A;  2RH6 A;  1EW2 A;  5DLV A;  5L0E A;  4KM4 A;  1O99 A;  3KD8 A;  4KJG A;  3WAY A;  2X98 A;  3A52 A;  4FDI A;  4ZG7 A;  2G9Y A;  5KXA A;  2ZKT A;  3NKM A;  3NKN A;  1E2S P;  2QZU A;  3ED4 A;  1EQJ A;  4LQY A;  4GTZ A;  4UPH A;  3DPC A;  5EGH A;  5EGE A;  5TJ3 A;  1HDH A;  3T01 A;  4ZG6 A;  1KHL A;  1K7H A;  2W5T A;  5C66 A;  1E33 P;  3BDH A;  1ANI A;  4LRE A;  3WAW A;  4LRC A;  2W5V A;  4UPK A;  5L0B A;  4YR1 A;  3NKR A;  3IDD A;  2W5R A;  3MK1 A;  1N2K A;  2GA3 A;  4CXU A;  3MK2 A;  3SZZ A;  3UN2 A;  1N2L A;  2GSU A;  1EW9 A;  4KAV A;  4LR8 A;  1KHK A;  1HJK A;  2IUC B;  4GTY A;  1URA A;  3M7V A;  3B5Q A;  4LR7 A;  4LRF A;  4NWX A;  5AJ9 A;  5HRT A;  2W5X A;  3Q3Q A;  1P49 A;  1AUK A;  4ZG9 A;  3M8Y A;  5INH A;  1ZEF A;  2W5W A;  1ALI A;  1KH9 A;  1KH4 A;  1ELZ A;  1O98 A;  3OT9 A;  3CMR A;  1Y7A A;  3MK0 A;  4UOP A;  1ALJ A;  1Y6V A;  5GOV A;  3UO0 A;  4LR9 A;  3WAV A;  5GRR A;  3LXQ A;  4ZGA A;  4UOO A;  1E1Z P;  4GTW A;  3M8W A;  3IGY B;  2IFY A;  1AJD A;  2IUC A;  4CXK A;  1ALK A;  5LRN A;  3DYC A;  1FSU A;  1ZED A;  3WAX A;  1ELY A; 
#chains in the Genus database with same CATH homology
 1ALH A;  5DLT A;  2VQR A;  1EI6 A;  1E3C P;  1SHN A;  3BDG B;  2W5Q A;  3T02 A;  3UNY A;  3NVL A;  2XR9 A;  4FDJ A;  1AJA A;  1URB A;  3T00 A;  1KH7 A;  3UN3 A;  1B8J A;  3NKP A;  1HQA A;  3M8Z A;  5LIA A;  3TWZ A;  2GLQ A;  5IJQ A;  5L0K A;  1AJC A;  4CXS A;  1EW8 A;  1ELX A;  5IJS A;  4N7T A;  4B56 A;  1ANJ A;  4KJD A;  4CYR A;  4KAY A;  2W8S A;  2XRG A;  4TN0 A;  4QAX A;  3NKQ A;  1KH5 A;  1KHN A;  4GTX A;  3WBH A;  4LRD A;  2ANH A;  1ED9 A;  1ZEB A;  3NKO A;  5K4P A;  4MHX A;  3E2D A;  4MIV A;  1AJB A;  3BDG A;  4LRA A;  2W8D A;  4UOR A;  1SHQ A;  3UN5 A;  5LRM A;  2D1G A;  3TX0 A;  4LRB A;  4UPL A;  3TG0 A;  4UPI A;  1EJJ A;  2GSO A;  4CYS A;  1ED8 A;  3SZY A;  4NWJ A;  5DLW A;  3IGZ B;  3BDF A;  4LR2 A;  2GSN A;  2W5S A;  5LQQ A;  1KHJ A;  4MY4 A;  2RH6 A;  1EW2 A;  5DLV A;  5L0E A;  4KM4 A;  1O99 A;  3KD8 A;  4KJG A;  3WAY A;  2X98 A;  3A52 A;  4FDI A;  4ZG7 A;  2G9Y A;  5KXA A;  2ZKT A;  3NKM A;  3NKN A;  1E2S P;  2QZU A;  3ED4 A;  1EQJ A;  4LQY A;  4GTZ A;  4UPH A;  3DPC A;  5EGH A;  5EGE A;  5TJ3 A;  1HDH A;  3T01 A;  4ZG6 A;  1KHL A;  1K7H A;  2W5T A;  5C66 A;  1E33 P;  3BDH A;  1ANI A;  4LRE A;  3WAW A;  4LRC A;  2W5V A;  4UPK A;  5L0B A;  4YR1 A;  3NKR A;  3IDD A;  2W5R A;  3MK1 A;  1N2K A;  2GA3 A;  4CXU A;  3MK2 A;  3SZZ A;  3UN2 A;  1N2L A;  2GSU A;  1EW9 A;  4KAV A;  4LR8 A;  1KHK A;  1HJK A;  2IUC B;  4GTY A;  1URA A;  3M7V A;  3B5Q A;  4LR7 A;  4LRF A;  4NWX A;  5AJ9 A;  5HRT A;  2W5X A;  3Q3Q A;  1P49 A;  1AUK A;  4ZG9 A;  3M8Y A;  5INH A;  1ZEF A;  2W5W A;  1ALI A;  1KH9 A;  1KH4 A;  1ELZ A;  1O98 A;  3OT9 A;  3CMR A;  1Y7A A;  3MK0 A;  4UOP A;  1ALJ A;  1Y6V A;  5GOV A;  3UO0 A;  4LR9 A;  3WAV A;  5GRR A;  3LXQ A;  4ZGA A;  4UOO A;  1E1Z P;  4GTW A;  3M8W A;  3IGY B;  2IFY A;  1AJD A;  2IUC A;  4CXK A;  1ALK A;  5LRN A;  3DYC A;  1FSU A;  1ZED A;  3WAX A;  1ELY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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