3NVLA

Crystal structure of phosphoglycerate mutase from trypanosoma brucei
Total Genus 199
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
199
Knots found
sequence length
549
structure length
549
Chain Sequence
LTLAAHKTLPRRKLVLVVLDGVGIGPRDEYDAVHVAKTPLMDALFNDPKHFRSICAHGTAVGLPTDADMGNSEVGHNALGAGRVVLQGASLVDDALESGEIFTSEGYRYLHGAFSQPGRTLHLIGLLSDGGVHSRDNQVYQILKHAGANGAKRIRVHALYDGRDVPDKTSFKFTDELEEVLAKLREGGCDARIASGGGRMFVTMDRYEADWSIVERGWRAQVLGEGRAFKSAREALTKFREEDANISDQYYPPFVIAGDDGRPIGTIEDGDAVLCFNFRGDRVIEMSRAFEEEEFDKFNRVRLPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRTSEEYLIGSGCNIFALSETQKFGHVTYFWNGNRSGKLSEERETFCEIPSDRVQFNQKPLMKSKEITDAAVDAIKSGKYDMIRINYPNGDMVGHTGDLKATITSLEAVDQSLQRLKEAVDSVNGVFLITADHGNSDDMVQRDKKGKPVRDAEGNLMPLTSHTLAPVPVFIGGAGLDPRVQMRTDLPRAGLANVTATFINLMGFEAPSDYEPSLIEVA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
source organism Trypanosoma brucei
publication title Crystal structure of phosphoglycerate mutase from Trypanosoma brucei.
pubmed doi rcsb
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
total genus 199
structure length 549
sequence length 549
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2010-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3nvlA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 3nvlA02
2W5SA 5C66A 1E33P 1ALHA 1AUKA 4CYRA 2GSNA 3UO0A 4ZGAA 1KHNA 1ZEBA 2IUCA 2W5WA 1AJBA 1EQJA 3UN5A 1Y7AA 3BDGA 4MIVA 5DLVA 2W8SA 2RH6A 3UNYA 4KM4A 3WBHA 3MK1A 3E2DA 4LRFA 1SHNA 3TWZA 3NKPA 1N2KA 5GRRA 4LRBA 1ANIA 4UORA 1ELXA 4LR9A 1AJDA 4KAVA 1KH4A 3M8WA 4GTWA 5LQQA 1AJAA 4KJGA 4B56A 3KD8A 1Y6VA 2GLQA 4CXSA 4LQYA 4YR1A 1ELZA 4UOOA 3IGZB 1KH5A 2W8DA 4UPLA 2IUCB 1O99A 1EW9A 2W5TA 4NWJA 3CMRA 1ZEDA 2VQRA 1ALJA 3NVLA 4ZG9A 3NKMA 1AJCA 3WAVA 4LR2A 4KAYA 3SZYA 1ANJA 3LXQA 1URAA 4GTZA 2G9YA 3TX0A 4QAXA 1KHJA 2X98A 1KH9A 4UOPA 3M7VA 3WAYA 1URBA 3WAXA 1P49A 2W5QA 3ED4A 1E2SP 5IJSA 3OT9A 4GTYA 5HRTA 2GSOA 5DLWA 3BDFA 5INHA 1ED9A 2XRGA 2GA3A 4KJDA 4LRAA 3TG0A 4UPKA 4TN0A 4CXUA 1EW2A 3BDHA 5GOVA 3B5QA 4FDIA 1E3CP 3BDGB 3SZZA 5L0BA 1KH7A 4CYSA 3UN3A 1B8JA 3WAWA 2ANHA 4LREA 5AJ9A 4UPIA 1HQAA 4ZG7A 3T00A 1KHKA 5LRMA 3Q3QA 1HDHA 1ALIA 3NKNA 5KXAA 3M8YA 4LR8A 2QZUA 1HJKA 4N7TA 5DLTA 4NWXA 3A52A 5L0KA 4GTXA 3DYCA 1ZEFA 2D1GA 1EI6A 1E1ZP 2IFYA 3NKOA 5IJQA 3T02A 2W5XA 1O98A 2ZKTA 1ALKA 5EGHA 2GSUA 5K4PA 1ED8A 3IDDA 3T01A 4ZG6A 4FDJA 2W5VA 1EJJA 3MK0A 1N2LA 3NKRA 4CXKA 3IGYB 4LR7A 3MK2A 1SHQA 2XR9A 4LRDA 3NKQA 5L0EA 5LRNA 5EGEA 5LIAA 4LRCA 1EW8A 4MHXA 2W5RA 3UN2A 1FSUA 3M8ZA 4UPHA 3DPCA 1KHLA 1K7HA 4MY4A 1ELYA 5TJ3A
chains in the Genus database with same CATH superfamily
2W5SA 5C66A 1E33P 1ALHA 1AUKA 4CYRA 2GSNA 3UO0A 4ZGAA 1KHNA 1ZEBA 2IUCA 2W5WA 1AJBA 1EQJA 3UN5A 1Y7AA 3BDGA 4MIVA 5DLVA 2W8SA 2RH6A 3UNYA 4KM4A 3WBHA 3MK1A 3E2DA 4LRFA 1SHNA 3TWZA 3NKPA 1N2KA 5GRRA 4LRBA 1ANIA 4UORA 1ELXA 4LR9A 1AJDA 4KAVA 1KH4A 3M8WA 4GTWA 5LQQA 1AJAA 4KJGA 4B56A 3KD8A 1Y6VA 2GLQA 4CXSA 4LQYA 4YR1A 1ELZA 4UOOA 3IGZB 1KH5A 2W8DA 4UPLA 2IUCB 1O99A 1EW9A 2W5TA 4NWJA 3CMRA 1ZEDA 2VQRA 1ALJA 3NVLA 4ZG9A 3NKMA 1AJCA 3WAVA 4LR2A 4KAYA 3SZYA 1ANJA 3LXQA 1URAA 4GTZA 2G9YA 3TX0A 4QAXA 1KHJA 2X98A 1KH9A 4UOPA 3M7VA 3WAYA 1URBA 3WAXA 1P49A 2W5QA 3ED4A 1E2SP 5IJSA 3OT9A 4GTYA 5HRTA 2GSOA 5DLWA 3BDFA 5INHA 1ED9A 2XRGA 2GA3A 4KJDA 4LRAA 3TG0A 4UPKA 4TN0A 4CXUA 1EW2A 3BDHA 5GOVA 3B5QA 4FDIA 1E3CP 3BDGB 3SZZA 5L0BA 1KH7A 4CYSA 3UN3A 1B8JA 3WAWA 2ANHA 4LREA 5AJ9A 4UPIA 1HQAA 4ZG7A 3T00A 1KHKA 5LRMA 3Q3QA 1HDHA 1ALIA 3NKNA 5KXAA 3M8YA 4LR8A 2QZUA 1HJKA 4N7TA 5DLTA 4NWXA 3A52A 5L0KA 4GTXA 3DYCA 1ZEFA 2D1GA 1EI6A 1E1ZP 2IFYA 3NKOA 5IJQA 3T02A 2W5XA 1O98A 2ZKTA 1ALKA 5EGHA 2GSUA 5K4PA 1ED8A 3IDDA 3T01A 4ZG6A 4FDJA 2W5VA 1EJJA 3MK0A 1N2LA 3NKRA 4CXKA 3IGYB 4LR7A 3MK2A 1SHQA 2XR9A 4LRDA 3NKQA 5L0EA 5LRNA 5EGEA 5LIAA 4LRCA 1EW8A 4MHXA 2W5RA 3UN2A 1FSUA 3M8ZA 4UPHA 3DPCA 1KHLA 1K7HA 4MY4A 1ELYA 5TJ3A
chains in the Genus database with same CATH topology
2W5SA 5C66A 1E33P 1ALHA 1AUKA 4CYRA 2GSNA 3UO0A 4ZGAA 1KHNA 1ZEBA 2IUCA 2W5WA 1AJBA 1EQJA 3UN5A 1Y7AA 3BDGA 4MIVA 5DLVA 2W8SA 2RH6A 3UNYA 4KM4A 3WBHA 3MK1A 3E2DA 4LRFA 1SHNA 3TWZA 3NKPA 1N2KA 5GRRA 4LRBA 1ANIA 4UORA 1ELXA 4LR9A 1AJDA 4KAVA 1KH4A 3M8WA 4GTWA 5LQQA 1AJAA 4KJGA 4B56A 3KD8A 1Y6VA 2GLQA 4CXSA 4LQYA 4YR1A 1ELZA 4UOOA 3IGZB 1KH5A 2W8DA 4UPLA 2IUCB 1O99A 1EW9A 2W5TA 4NWJA 3CMRA 1ZEDA 2VQRA 1ALJA 3NVLA 4ZG9A 3NKMA 1AJCA 3WAVA 4LR2A 4KAYA 3SZYA 1ANJA 3LXQA 1URAA 4GTZA 2G9YA 3TX0A 4QAXA 1KHJA 2X98A 1KH9A 4UOPA 3M7VA 3WAYA 1URBA 3WAXA 1P49A 2W5QA 3ED4A 1E2SP 5IJSA 3OT9A 4GTYA 5HRTA 2GSOA 5DLWA 3BDFA 5INHA 1ED9A 2XRGA 2GA3A 4KJDA 4LRAA 3TG0A 4UPKA 4TN0A 4CXUA 1EW2A 3BDHA 5GOVA 3B5QA 4FDIA 1E3CP 3BDGB 3SZZA 5L0BA 1KH7A 4CYSA 3UN3A 1B8JA 3WAWA 2ANHA 4LREA 5AJ9A 4UPIA 1HQAA 4ZG7A 3T00A 1KHKA 5LRMA 3Q3QA 1HDHA 1ALIA 3NKNA 5KXAA 3M8YA 4LR8A 2QZUA 1HJKA 4N7TA 5DLTA 4NWXA 3A52A 5L0KA 4GTXA 3DYCA 1ZEFA 2D1GA 1EI6A 1E1ZP 2IFYA 3NKOA 5IJQA 3T02A 2W5XA 1O98A 2ZKTA 1ALKA 5EGHA 2GSUA 5K4PA 1ED8A 3IDDA 3T01A 4ZG6A 4FDJA 2W5VA 1EJJA 3MK0A 1N2LA 3NKRA 4CXKA 3IGYB 4LR7A 3MK2A 1SHQA 2XR9A 4LRDA 3NKQA 5L0EA 5LRNA 5EGEA 5LIAA 4LRCA 1EW8A 4MHXA 2W5RA 3UN2A 1FSUA 3M8ZA 4UPHA 3DPCA 1KHLA 1K7HA 4MY4A 1ELYA 5TJ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W5S A;  5C66 A;  1E33 P;  1ALH A;  1AUK A;  4CYR A;  2GSN A;  3UO0 A;  4ZGA A;  1KHN A;  1ZEB A;  2IUC A;  2W5W A;  1AJB A;  1EQJ A;  3UN5 A;  1Y7A A;  3BDG A;  4MIV A;  5DLV A;  2W8S A;  2RH6 A;  3UNY A;  4KM4 A;  3WBH A;  3MK1 A;  3E2D A;  4LRF A;  1SHN A;  3TWZ A;  3NKP A;  1N2K A;  5GRR A;  4LRB A;  1ANI A;  4UOR A;  1ELX A;  4LR9 A;  1AJD A;  4KAV A;  1KH4 A;  3M8W A;  4GTW A;  5LQQ A;  1AJA A;  4KJG A;  4B56 A;  3KD8 A;  1Y6V A;  2GLQ A;  4CXS A;  4LQY A;  4YR1 A;  1ELZ A;  4UOO A;  3IGZ B;  1KH5 A;  2W8D A;  4UPL A;  2IUC B;  1O99 A;  1EW9 A;  2W5T A;  4NWJ A;  3CMR A;  1ZED A;  2VQR A;  1ALJ A;  3NVL A;  4ZG9 A;  3NKM A;  1AJC A;  3WAV A;  4LR2 A;  4KAY A;  3SZY A;  1ANJ A;  3LXQ A;  1URA A;  4GTZ A;  2G9Y A;  3TX0 A;  4QAX A;  1KHJ A;  2X98 A;  1KH9 A;  4UOP A;  3M7V A;  3WAY A;  1URB A;  3WAX A;  1P49 A;  2W5Q A;  3ED4 A;  1E2S P;  5IJS A;  3OT9 A;  4GTY A;  5HRT A;  2GSO A;  5DLW A;  3BDF A;  5INH A;  1ED9 A;  2XRG A;  2GA3 A;  4KJD A;  4LRA A;  3TG0 A;  4UPK A;  4TN0 A;  4CXU A;  1EW2 A;  3BDH A;  5GOV A;  3B5Q A;  4FDI A;  1E3C P;  3BDG B;  3SZZ A;  5L0B A;  1KH7 A;  4CYS A;  3UN3 A;  1B8J A;  3WAW A;  2ANH A;  4LRE A;  5AJ9 A;  4UPI A;  1HQA A;  4ZG7 A;  3T00 A;  1KHK A;  5LRM A;  3Q3Q A;  1HDH A;  1ALI A;  3NKN A;  5KXA A;  3M8Y A;  4LR8 A;  2QZU A;  1HJK A;  4N7T A;  5DLT A;  4NWX A;  3A52 A;  5L0K A;  4GTX A;  3DYC A;  1ZEF A;  2D1G A;  1EI6 A;  1E1Z P;  2IFY A;  3NKO A;  5IJQ A;  3T02 A;  2W5X A;  1O98 A;  2ZKT A;  1ALK A;  5EGH A;  2GSU A;  5K4P A;  1ED8 A;  3IDD A;  3T01 A;  4ZG6 A;  4FDJ A;  2W5V A;  1EJJ A;  3MK0 A;  1N2L A;  3NKR A;  4CXK A;  3IGY B;  4LR7 A;  3MK2 A;  1SHQ A;  2XR9 A;  4LRD A;  3NKQ A;  5L0E A;  5LRN A;  5EGE A;  5LIA A;  4LRC A;  1EW8 A;  4MHX A;  2W5R A;  3UN2 A;  1FSU A;  3M8Z A;  4UPH A;  3DPC A;  1KHL A;  1K7H A;  4MY4 A;  1ELY A;  5TJ3 A; 
#chains in the Genus database with same CATH topology
 2W5S A;  5C66 A;  1E33 P;  1ALH A;  1AUK A;  4CYR A;  2GSN A;  3UO0 A;  4ZGA A;  1KHN A;  1ZEB A;  2IUC A;  2W5W A;  1AJB A;  1EQJ A;  3UN5 A;  1Y7A A;  3BDG A;  4MIV A;  5DLV A;  2W8S A;  2RH6 A;  3UNY A;  4KM4 A;  3WBH A;  3MK1 A;  3E2D A;  4LRF A;  1SHN A;  3TWZ A;  3NKP A;  1N2K A;  5GRR A;  4LRB A;  1ANI A;  4UOR A;  1ELX A;  4LR9 A;  1AJD A;  4KAV A;  1KH4 A;  3M8W A;  4GTW A;  5LQQ A;  1AJA A;  4KJG A;  4B56 A;  3KD8 A;  1Y6V A;  2GLQ A;  4CXS A;  4LQY A;  4YR1 A;  1ELZ A;  4UOO A;  3IGZ B;  1KH5 A;  2W8D A;  4UPL A;  2IUC B;  1O99 A;  1EW9 A;  2W5T A;  4NWJ A;  3CMR A;  1ZED A;  2VQR A;  1ALJ A;  3NVL A;  4ZG9 A;  3NKM A;  1AJC A;  3WAV A;  4LR2 A;  4KAY A;  3SZY A;  1ANJ A;  3LXQ A;  1URA A;  4GTZ A;  2G9Y A;  3TX0 A;  4QAX A;  1KHJ A;  2X98 A;  1KH9 A;  4UOP A;  3M7V A;  3WAY A;  1URB A;  3WAX A;  1P49 A;  2W5Q A;  3ED4 A;  1E2S P;  5IJS A;  3OT9 A;  4GTY A;  5HRT A;  2GSO A;  5DLW A;  3BDF A;  5INH A;  1ED9 A;  2XRG A;  2GA3 A;  4KJD A;  4LRA A;  3TG0 A;  4UPK A;  4TN0 A;  4CXU A;  1EW2 A;  3BDH A;  5GOV A;  3B5Q A;  4FDI A;  1E3C P;  3BDG B;  3SZZ A;  5L0B A;  1KH7 A;  4CYS A;  3UN3 A;  1B8J A;  3WAW A;  2ANH A;  4LRE A;  5AJ9 A;  4UPI A;  1HQA A;  4ZG7 A;  3T00 A;  1KHK A;  5LRM A;  3Q3Q A;  1HDH A;  1ALI A;  3NKN A;  5KXA A;  3M8Y A;  4LR8 A;  2QZU A;  1HJK A;  4N7T A;  5DLT A;  4NWX A;  3A52 A;  5L0K A;  4GTX A;  3DYC A;  1ZEF A;  2D1G A;  1EI6 A;  1E1Z P;  2IFY A;  3NKO A;  5IJQ A;  3T02 A;  2W5X A;  1O98 A;  2ZKT A;  1ALK A;  5EGH A;  2GSU A;  5K4P A;  1ED8 A;  3IDD A;  3T01 A;  4ZG6 A;  4FDJ A;  2W5V A;  1EJJ A;  3MK0 A;  1N2L A;  3NKR A;  4CXK A;  3IGY B;  4LR7 A;  3MK2 A;  1SHQ A;  2XR9 A;  4LRD A;  3NKQ A;  5L0E A;  5LRN A;  5EGE A;  5LIA A;  4LRC A;  1EW8 A;  4MHX A;  2W5R A;  3UN2 A;  1FSU A;  3M8Z A;  4UPH A;  3DPC A;  1KHL A;  1K7H A;  4MY4 A;  1ELY A;  5TJ3 A; 
#chains in the Genus database with same CATH homology
 2W5S A;  5C66 A;  1E33 P;  1ALH A;  1AUK A;  4CYR A;  2GSN A;  3UO0 A;  4ZGA A;  1KHN A;  1ZEB A;  2IUC A;  2W5W A;  1AJB A;  1EQJ A;  3UN5 A;  1Y7A A;  3BDG A;  4MIV A;  5DLV A;  2W8S A;  2RH6 A;  3UNY A;  4KM4 A;  3WBH A;  3MK1 A;  3E2D A;  4LRF A;  1SHN A;  3TWZ A;  3NKP A;  1N2K A;  5GRR A;  4LRB A;  1ANI A;  4UOR A;  1ELX A;  4LR9 A;  1AJD A;  4KAV A;  1KH4 A;  3M8W A;  4GTW A;  5LQQ A;  1AJA A;  4KJG A;  4B56 A;  3KD8 A;  1Y6V A;  2GLQ A;  4CXS A;  4LQY A;  4YR1 A;  1ELZ A;  4UOO A;  3IGZ B;  1KH5 A;  2W8D A;  4UPL A;  2IUC B;  1O99 A;  1EW9 A;  2W5T A;  4NWJ A;  3CMR A;  1ZED A;  2VQR A;  1ALJ A;  3NVL A;  4ZG9 A;  3NKM A;  1AJC A;  3WAV A;  4LR2 A;  4KAY A;  3SZY A;  1ANJ A;  3LXQ A;  1URA A;  4GTZ A;  2G9Y A;  3TX0 A;  4QAX A;  1KHJ A;  2X98 A;  1KH9 A;  4UOP A;  3M7V A;  3WAY A;  1URB A;  3WAX A;  1P49 A;  2W5Q A;  3ED4 A;  1E2S P;  5IJS A;  3OT9 A;  4GTY A;  5HRT A;  2GSO A;  5DLW A;  3BDF A;  5INH A;  1ED9 A;  2XRG A;  2GA3 A;  4KJD A;  4LRA A;  3TG0 A;  4UPK A;  4TN0 A;  4CXU A;  1EW2 A;  3BDH A;  5GOV A;  3B5Q A;  4FDI A;  1E3C P;  3BDG B;  3SZZ A;  5L0B A;  1KH7 A;  4CYS A;  3UN3 A;  1B8J A;  3WAW A;  2ANH A;  4LRE A;  5AJ9 A;  4UPI A;  1HQA A;  4ZG7 A;  3T00 A;  1KHK A;  5LRM A;  3Q3Q A;  1HDH A;  1ALI A;  3NKN A;  5KXA A;  3M8Y A;  4LR8 A;  2QZU A;  1HJK A;  4N7T A;  5DLT A;  4NWX A;  3A52 A;  5L0K A;  4GTX A;  3DYC A;  1ZEF A;  2D1G A;  1EI6 A;  1E1Z P;  2IFY A;  3NKO A;  5IJQ A;  3T02 A;  2W5X A;  1O98 A;  2ZKT A;  1ALK A;  5EGH A;  2GSU A;  5K4P A;  1ED8 A;  3IDD A;  3T01 A;  4ZG6 A;  4FDJ A;  2W5V A;  1EJJ A;  3MK0 A;  1N2L A;  3NKR A;  4CXK A;  3IGY B;  4LR7 A;  3MK2 A;  1SHQ A;  2XR9 A;  4LRD A;  3NKQ A;  5L0E A;  5LRN A;  5EGE A;  5LIA A;  4LRC A;  1EW8 A;  4MHX A;  2W5R A;  3UN2 A;  1FSU A;  3M8Z A;  4UPH A;  3DPC A;  1KHL A;  1K7H A;  4MY4 A;  1ELY A;  5TJ3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...