2W5TA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 167
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5tA02
1FSUA 3IGZB 1EI6A 1ZEFA 1EJJA 2W8DA 1KHKA 2W5QA 1ALIA 3KD8A 4YR1A 1B8JA 1ELYA 3UN2A 3NKMA 4ZG6A 3NVLA 2W5TA 1EQJA 1URBA 3Q3QA 5LRMA 3UNYA 1E3CP 1ELZA 1AJCA 1AJDA 1AUKA 2XRGA 4TN0A 3TG0A 1ANJA 1E2SP 5IJQA 2GLQA 3CMRA 4LRFA 3UN5A 1E33P 3NKQA 4LQYA 3SZYA 3ED4A 3WAVA 4UPIA 3MK2A 3OT9A 3M8WA 4CXSA 1ED9A 5DLWA 4MY4A 2QZUA 2ZKTA 2GA3A 3MK0A 3BDGB 5EGHA 3BDGA 5KXAA 4KJDA 5L0KA 2D1GA 3NKRA 3IGYB 2W5SA 4LREA 4NWXA 2X98A 1KH4A 5DLVA 1HJKA 3UO0A 2IFYA 3NKPA 4ZG7A 3T02A 3M8ZA 1EW2A 5INHA 5L0BA 1ANIA 3SZZA 4N7TA 1E1ZP 3WBHA 3WAWA 1ZEBA 3A52A 1P49A 1HQAA 5LIAA 1ELXA 4LR2A 1ED8A 3MK1A 1KHJA 4ZGAA 4UOPA 5L0EA 2W8SA 3BDFA 4FDJA 3T00A 5IJSA 1ALKA 4UPKA 4B56A 1URAA 2G9YA 4CXUA 1AJBA 2W5XA 3TWZA 4QAXA 3NKNA 5LQQA 4KJGA 1SHNA 4LR7A 1N2LA 2ANHA 2IUCB 3NKOA 2IUCA 4NWJA 3T01A 1ZEDA 5TJ3A 4LR8A 3IDDA 3M8YA 1KHLA 1Y6VA 2W5WA 5AJ9A 4KAYA 4LR9A 1AJAA 1KH7A 1KH5A 3B5QA 3TX0A 2RH6A 5DLTA 3DPCA 2GSOA 4UPHA 4GTYA 1HDHA 1N2KA 4KAVA 3WAXA 1Y7AA 2GSUA 3BDHA 4GTZA 4MIVA 5HRTA 5C66A 4UOOA 5LRNA 1O98A 2VQRA 4LRDA 5EGEA 1K7HA 1KH9A 3M7VA 4GTWA 5GRRA 4CYSA 1ALJA 4LRBA 1ALHA 4GTXA 5K4PA 4KM4A 2W5VA 4LRCA 3E2DA 4MHXA 4UORA 1KHNA 3DYCA 4FDIA 4LRAA 1EW8A 1SHQA 1EW9A 2XR9A 3LXQA 2GSNA 4CYRA 3UN3A 4ZG9A 3WAYA 4UPLA 1O99A 5GOVA 2W5RA 4CXKA
chains in the Genus database with same CATH superfamily
1FSUA 3IGZB 1EI6A 1ZEFA 1EJJA 2W8DA 1KHKA 2W5QA 1ALIA 3KD8A 4YR1A 1B8JA 1ELYA 3UN2A 3NKMA 4ZG6A 3NVLA 2W5TA 1EQJA 1URBA 3Q3QA 5LRMA 3UNYA 1E3CP 1ELZA 1AJCA 1AJDA 1AUKA 2XRGA 4TN0A 3TG0A 1ANJA 1E2SP 5IJQA 2GLQA 3CMRA 4LRFA 3UN5A 1E33P 3NKQA 4LQYA 3SZYA 3ED4A 3WAVA 4UPIA 3MK2A 3OT9A 3M8WA 4CXSA 1ED9A 5DLWA 4MY4A 2QZUA 2ZKTA 2GA3A 3MK0A 3BDGB 5EGHA 3BDGA 5KXAA 4KJDA 5L0KA 2D1GA 3NKRA 3IGYB 2W5SA 4LREA 4NWXA 2X98A 1KH4A 5DLVA 1HJKA 3UO0A 2IFYA 3NKPA 4ZG7A 3T02A 3M8ZA 1EW2A 5INHA 5L0BA 1ANIA 3SZZA 4N7TA 1E1ZP 3WBHA 3WAWA 1ZEBA 3A52A 1P49A 1HQAA 5LIAA 1ELXA 4LR2A 1ED8A 3MK1A 1KHJA 4ZGAA 4UOPA 5L0EA 2W8SA 3BDFA 4FDJA 3T00A 5IJSA 1ALKA 4UPKA 4B56A 1URAA 2G9YA 4CXUA 1AJBA 2W5XA 3TWZA 4QAXA 3NKNA 5LQQA 4KJGA 1SHNA 4LR7A 1N2LA 2ANHA 2IUCB 3NKOA 2IUCA 4NWJA 3T01A 1ZEDA 5TJ3A 4LR8A 3IDDA 3M8YA 1KHLA 1Y6VA 2W5WA 5AJ9A 4KAYA 4LR9A 1AJAA 1KH7A 1KH5A 3B5QA 3TX0A 2RH6A 5DLTA 3DPCA 2GSOA 4UPHA 4GTYA 1HDHA 1N2KA 4KAVA 3WAXA 1Y7AA 2GSUA 3BDHA 4GTZA 4MIVA 5HRTA 5C66A 4UOOA 5LRNA 1O98A 2VQRA 4LRDA 5EGEA 1K7HA 1KH9A 3M7VA 4GTWA 5GRRA 4CYSA 1ALJA 4LRBA 1ALHA 4GTXA 5K4PA 4KM4A 2W5VA 4LRCA 3E2DA 4MHXA 4UORA 1KHNA 3DYCA 4FDIA 4LRAA 1EW8A 1SHQA 1EW9A 2XR9A 3LXQA 2GSNA 4CYRA 3UN3A 4ZG9A 3WAYA 4UPLA 1O99A 5GOVA 2W5RA 4CXKA
chains in the Genus database with same CATH topology
1FSUA 3IGZB 1EI6A 1ZEFA 1EJJA 2W8DA 1KHKA 2W5QA 1ALIA 3KD8A 4YR1A 1B8JA 1ELYA 3UN2A 3NKMA 4ZG6A 3NVLA 2W5TA 1EQJA 1URBA 3Q3QA 5LRMA 3UNYA 1E3CP 1ELZA 1AJCA 1AJDA 1AUKA 2XRGA 4TN0A 3TG0A 1ANJA 1E2SP 5IJQA 2GLQA 3CMRA 4LRFA 3UN5A 1E33P 3NKQA 4LQYA 3SZYA 3ED4A 3WAVA 4UPIA 3MK2A 3OT9A 3M8WA 4CXSA 1ED9A 5DLWA 4MY4A 2QZUA 2ZKTA 2GA3A 3MK0A 3BDGB 5EGHA 3BDGA 5KXAA 4KJDA 5L0KA 2D1GA 3NKRA 3IGYB 2W5SA 4LREA 4NWXA 2X98A 1KH4A 5DLVA 1HJKA 3UO0A 2IFYA 3NKPA 4ZG7A 3T02A 3M8ZA 1EW2A 5INHA 5L0BA 1ANIA 3SZZA 4N7TA 1E1ZP 3WBHA 3WAWA 1ZEBA 3A52A 1P49A 1HQAA 5LIAA 1ELXA 4LR2A 1ED8A 3MK1A 1KHJA 4ZGAA 4UOPA 5L0EA 2W8SA 3BDFA 4FDJA 3T00A 5IJSA 1ALKA 4UPKA 4B56A 1URAA 2G9YA 4CXUA 1AJBA 2W5XA 3TWZA 4QAXA 3NKNA 5LQQA 4KJGA 1SHNA 4LR7A 1N2LA 2ANHA 2IUCB 3NKOA 2IUCA 4NWJA 3T01A 1ZEDA 5TJ3A 4LR8A 3IDDA 3M8YA 1KHLA 1Y6VA 2W5WA 5AJ9A 4KAYA 4LR9A 1AJAA 1KH7A 1KH5A 3B5QA 3TX0A 2RH6A 5DLTA 3DPCA 2GSOA 4UPHA 4GTYA 1HDHA 1N2KA 4KAVA 3WAXA 1Y7AA 2GSUA 3BDHA 4GTZA 4MIVA 5HRTA 5C66A 4UOOA 5LRNA 1O98A 2VQRA 4LRDA 5EGEA 1K7HA 1KH9A 3M7VA 4GTWA 5GRRA 4CYSA 1ALJA 4LRBA 1ALHA 4GTXA 5K4PA 4KM4A 2W5VA 4LRCA 3E2DA 4MHXA 4UORA 1KHNA 3DYCA 4FDIA 4LRAA 1EW8A 1SHQA 1EW9A 2XR9A 3LXQA 2GSNA 4CYRA 3UN3A 4ZG9A 3WAYA 4UPLA 1O99A 5GOVA 2W5RA 4CXKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FSU A;  3IGZ B;  1EI6 A;  1ZEF A;  1EJJ A;  2W8D A;  1KHK A;  2W5Q A;  1ALI A;  3KD8 A;  4YR1 A;  1B8J A;  1ELY A;  3UN2 A;  3NKM A;  4ZG6 A;  3NVL A;  2W5T A;  1EQJ A;  1URB A;  3Q3Q A;  5LRM A;  3UNY A;  1E3C P;  1ELZ A;  1AJC A;  1AJD A;  1AUK A;  2XRG A;  4TN0 A;  3TG0 A;  1ANJ A;  1E2S P;  5IJQ A;  2GLQ A;  3CMR A;  4LRF A;  3UN5 A;  1E33 P;  3NKQ A;  4LQY A;  3SZY A;  3ED4 A;  3WAV A;  4UPI A;  3MK2 A;  3OT9 A;  3M8W A;  4CXS A;  1ED9 A;  5DLW A;  4MY4 A;  2QZU A;  2ZKT A;  2GA3 A;  3MK0 A;  3BDG B;  5EGH A;  3BDG A;  5KXA A;  4KJD A;  5L0K A;  2D1G A;  3NKR A;  3IGY B;  2W5S A;  4LRE A;  4NWX A;  2X98 A;  1KH4 A;  5DLV A;  1HJK A;  3UO0 A;  2IFY A;  3NKP A;  4ZG7 A;  3T02 A;  3M8Z A;  1EW2 A;  5INH A;  5L0B A;  1ANI A;  3SZZ A;  4N7T A;  1E1Z P;  3WBH A;  3WAW A;  1ZEB A;  3A52 A;  1P49 A;  1HQA A;  5LIA A;  1ELX A;  4LR2 A;  1ED8 A;  3MK1 A;  1KHJ A;  4ZGA A;  4UOP A;  5L0E A;  2W8S A;  3BDF A;  4FDJ A;  3T00 A;  5IJS A;  1ALK A;  4UPK A;  4B56 A;  1URA A;  2G9Y A;  4CXU A;  1AJB A;  2W5X A;  3TWZ A;  4QAX A;  3NKN A;  5LQQ A;  4KJG A;  1SHN A;  4LR7 A;  1N2L A;  2ANH A;  2IUC B;  3NKO A;  2IUC A;  4NWJ A;  3T01 A;  1ZED A;  5TJ3 A;  4LR8 A;  3IDD A;  3M8Y A;  1KHL A;  1Y6V A;  2W5W A;  5AJ9 A;  4KAY A;  4LR9 A;  1AJA A;  1KH7 A;  1KH5 A;  3B5Q A;  3TX0 A;  2RH6 A;  5DLT A;  3DPC A;  2GSO A;  4UPH A;  4GTY A;  1HDH A;  1N2K A;  4KAV A;  3WAX A;  1Y7A A;  2GSU A;  3BDH A;  4GTZ A;  4MIV A;  5HRT A;  5C66 A;  4UOO A;  5LRN A;  1O98 A;  2VQR A;  4LRD A;  5EGE A;  1K7H A;  1KH9 A;  3M7V A;  4GTW A;  5GRR A;  4CYS A;  1ALJ A;  4LRB A;  1ALH A;  4GTX A;  5K4P A;  4KM4 A;  2W5V A;  4LRC A;  3E2D A;  4MHX A;  4UOR A;  1KHN A;  3DYC A;  4FDI A;  4LRA A;  1EW8 A;  1SHQ A;  1EW9 A;  2XR9 A;  3LXQ A;  2GSN A;  4CYR A;  3UN3 A;  4ZG9 A;  3WAY A;  4UPL A;  1O99 A;  5GOV A;  2W5R A;  4CXK A; 
#chains in the Genus database with same CATH topology
 1FSU A;  3IGZ B;  1EI6 A;  1ZEF A;  1EJJ A;  2W8D A;  1KHK A;  2W5Q A;  1ALI A;  3KD8 A;  4YR1 A;  1B8J A;  1ELY A;  3UN2 A;  3NKM A;  4ZG6 A;  3NVL A;  2W5T A;  1EQJ A;  1URB A;  3Q3Q A;  5LRM A;  3UNY A;  1E3C P;  1ELZ A;  1AJC A;  1AJD A;  1AUK A;  2XRG A;  4TN0 A;  3TG0 A;  1ANJ A;  1E2S P;  5IJQ A;  2GLQ A;  3CMR A;  4LRF A;  3UN5 A;  1E33 P;  3NKQ A;  4LQY A;  3SZY A;  3ED4 A;  3WAV A;  4UPI A;  3MK2 A;  3OT9 A;  3M8W A;  4CXS A;  1ED9 A;  5DLW A;  4MY4 A;  2QZU A;  2ZKT A;  2GA3 A;  3MK0 A;  3BDG B;  5EGH A;  3BDG A;  5KXA A;  4KJD A;  5L0K A;  2D1G A;  3NKR A;  3IGY B;  2W5S A;  4LRE A;  4NWX A;  2X98 A;  1KH4 A;  5DLV A;  1HJK A;  3UO0 A;  2IFY A;  3NKP A;  4ZG7 A;  3T02 A;  3M8Z A;  1EW2 A;  5INH A;  5L0B A;  1ANI A;  3SZZ A;  4N7T A;  1E1Z P;  3WBH A;  3WAW A;  1ZEB A;  3A52 A;  1P49 A;  1HQA A;  5LIA A;  1ELX A;  4LR2 A;  1ED8 A;  3MK1 A;  1KHJ A;  4ZGA A;  4UOP A;  5L0E A;  2W8S A;  3BDF A;  4FDJ A;  3T00 A;  5IJS A;  1ALK A;  4UPK A;  4B56 A;  1URA A;  2G9Y A;  4CXU A;  1AJB A;  2W5X A;  3TWZ A;  4QAX A;  3NKN A;  5LQQ A;  4KJG A;  1SHN A;  4LR7 A;  1N2L A;  2ANH A;  2IUC B;  3NKO A;  2IUC A;  4NWJ A;  3T01 A;  1ZED A;  5TJ3 A;  4LR8 A;  3IDD A;  3M8Y A;  1KHL A;  1Y6V A;  2W5W A;  5AJ9 A;  4KAY A;  4LR9 A;  1AJA A;  1KH7 A;  1KH5 A;  3B5Q A;  3TX0 A;  2RH6 A;  5DLT A;  3DPC A;  2GSO A;  4UPH A;  4GTY A;  1HDH A;  1N2K A;  4KAV A;  3WAX A;  1Y7A A;  2GSU A;  3BDH A;  4GTZ A;  4MIV A;  5HRT A;  5C66 A;  4UOO A;  5LRN A;  1O98 A;  2VQR A;  4LRD A;  5EGE A;  1K7H A;  1KH9 A;  3M7V A;  4GTW A;  5GRR A;  4CYS A;  1ALJ A;  4LRB A;  1ALH A;  4GTX A;  5K4P A;  4KM4 A;  2W5V A;  4LRC A;  3E2D A;  4MHX A;  4UOR A;  1KHN A;  3DYC A;  4FDI A;  4LRA A;  1EW8 A;  1SHQ A;  1EW9 A;  2XR9 A;  3LXQ A;  2GSN A;  4CYR A;  3UN3 A;  4ZG9 A;  3WAY A;  4UPL A;  1O99 A;  5GOV A;  2W5R A;  4CXK A; 
#chains in the Genus database with same CATH homology
 1FSU A;  3IGZ B;  1EI6 A;  1ZEF A;  1EJJ A;  2W8D A;  1KHK A;  2W5Q A;  1ALI A;  3KD8 A;  4YR1 A;  1B8J A;  1ELY A;  3UN2 A;  3NKM A;  4ZG6 A;  3NVL A;  2W5T A;  1EQJ A;  1URB A;  3Q3Q A;  5LRM A;  3UNY A;  1E3C P;  1ELZ A;  1AJC A;  1AJD A;  1AUK A;  2XRG A;  4TN0 A;  3TG0 A;  1ANJ A;  1E2S P;  5IJQ A;  2GLQ A;  3CMR A;  4LRF A;  3UN5 A;  1E33 P;  3NKQ A;  4LQY A;  3SZY A;  3ED4 A;  3WAV A;  4UPI A;  3MK2 A;  3OT9 A;  3M8W A;  4CXS A;  1ED9 A;  5DLW A;  4MY4 A;  2QZU A;  2ZKT A;  2GA3 A;  3MK0 A;  3BDG B;  5EGH A;  3BDG A;  5KXA A;  4KJD A;  5L0K A;  2D1G A;  3NKR A;  3IGY B;  2W5S A;  4LRE A;  4NWX A;  2X98 A;  1KH4 A;  5DLV A;  1HJK A;  3UO0 A;  2IFY A;  3NKP A;  4ZG7 A;  3T02 A;  3M8Z A;  1EW2 A;  5INH A;  5L0B A;  1ANI A;  3SZZ A;  4N7T A;  1E1Z P;  3WBH A;  3WAW A;  1ZEB A;  3A52 A;  1P49 A;  1HQA A;  5LIA A;  1ELX A;  4LR2 A;  1ED8 A;  3MK1 A;  1KHJ A;  4ZGA A;  4UOP A;  5L0E A;  2W8S A;  3BDF A;  4FDJ A;  3T00 A;  5IJS A;  1ALK A;  4UPK A;  4B56 A;  1URA A;  2G9Y A;  4CXU A;  1AJB A;  2W5X A;  3TWZ A;  4QAX A;  3NKN A;  5LQQ A;  4KJG A;  1SHN A;  4LR7 A;  1N2L A;  2ANH A;  2IUC B;  3NKO A;  2IUC A;  4NWJ A;  3T01 A;  1ZED A;  5TJ3 A;  4LR8 A;  3IDD A;  3M8Y A;  1KHL A;  1Y6V A;  2W5W A;  5AJ9 A;  4KAY A;  4LR9 A;  1AJA A;  1KH7 A;  1KH5 A;  3B5Q A;  3TX0 A;  2RH6 A;  5DLT A;  3DPC A;  2GSO A;  4UPH A;  4GTY A;  1HDH A;  1N2K A;  4KAV A;  3WAX A;  1Y7A A;  2GSU A;  3BDH A;  4GTZ A;  4MIV A;  5HRT A;  5C66 A;  4UOO A;  5LRN A;  1O98 A;  2VQR A;  4LRD A;  5EGE A;  1K7H A;  1KH9 A;  3M7V A;  4GTW A;  5GRR A;  4CYS A;  1ALJ A;  4LRB A;  1ALH A;  4GTX A;  5K4P A;  4KM4 A;  2W5V A;  4LRC A;  3E2D A;  4MHX A;  4UOR A;  1KHN A;  3DYC A;  4FDI A;  4LRA A;  1EW8 A;  1SHQ A;  1EW9 A;  2XR9 A;  3LXQ A;  2GSN A;  4CYR A;  3UN3 A;  4ZG9 A;  3WAY A;  4UPL A;  1O99 A;  5GOV A;  2W5R A;  4CXK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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