2W5TA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
total genus 167
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5tA02
3UO0A 4KM4A 1AUKA 1ZEFA 3UNYA 1AJDA 3WAVA 3NKOA 1KH5A 3LXQA 4MY4A 3WBHA 1ALHA 1KHKA 3IDDA 4NWJA 4KJDA 1ANIA 2W8SA 4LRAA 3T02A 3UN2A 3T01A 2ANHA 4LR8A 4ZG6A 2GSUA 3Q3QA 3BDGB 4UPHA 5LRNA 4LQYA 4KAYA 3NKQA 5AJ9A 1KH7A 2W5QA 1ELYA 4MHXA 1EW2A 1EW8A 4NWXA 4CXUA 2XR9A 3NVLA 5LIAA 3TWZA 3A52A 4FDIA 3MK1A 4B56A 1E3CP 2GA3A 2VQRA 5GOVA 3E2DA 4CXSA 5IJQA 4LRFA 4MIVA 3MK2A 4QAXA 2W5WA 3TG0A 4LRBA 1EJJA 4GTWA 1K7HA 4ZG9A 3OT9A 4LR9A 4ZG7A 3B5QA 3M8WA 4LRCA 5IJSA 3ED4A 1SHNA 1E2SP 5L0BA 3M7VA 1URBA 3TX0A 3NKPA 1EW9A 1HJKA 1ED9A 2W5VA 3WAYA 4TN0A 2W8DA 1EI6A 1E1ZP 3NKNA 1HQAA 1ED8A 1URAA 1ALJA 1KHNA 1AJCA 1ELXA 4N7TA 4GTZA 5EGHA 2W5XA 5HRTA 3BDGA 4FDJA 3SZYA 1ELZA 1KHJA 3IGZB 3DPCA 3IGYB 3SZZA 5LRMA 3KD8A 2G9YA 5KXAA 5L0KA 1O99A 5DLVA 1FSUA 3CMRA 2W5RA 2D1GA 3BDFA 1ZEBA 5DLWA 2IUCA 2IUCB 2W5SA 4GTYA 5LQQA 3M8YA 4LR2A 1ALKA 2GLQA 4UORA 4CYSA 1B8JA 3WAWA 1AJAA 1SHQA 2QZUA 3NKMA 4LREA 1KH4A 2ZKTA 5EGEA 1N2KA 3BDHA 5K4PA 1N2LA 4YR1A 4CYRA 5TJ3A 4ZGAA 1HDHA 4UOOA 3M8ZA 4UOPA 5L0EA 1O98A 4UPLA 2IFYA 4LR7A 3UN5A 4KAVA 4LRDA 5DLTA 4UPKA 3NKRA 4GTXA 1EQJA 4UPIA 1ALIA 3WAXA 1KH9A 2RH6A 1E33P 1Y7AA 2W5TA 2X98A 2XRGA 5GRRA 4KJGA 4CXKA 1ZEDA 1KHLA 1AJBA 1P49A 5C66A 2GSNA 3UN3A 3MK0A 5INHA 1Y6VA 1ANJA 2GSOA 3T00A 3DYCA
chains in the Genus database with same CATH superfamily
3UO0A 4KM4A 1AUKA 1ZEFA 3UNYA 1AJDA 3WAVA 3NKOA 1KH5A 3LXQA 4MY4A 3WBHA 1ALHA 1KHKA 3IDDA 4NWJA 4KJDA 1ANIA 2W8SA 4LRAA 3T02A 3UN2A 3T01A 2ANHA 4LR8A 4ZG6A 2GSUA 3Q3QA 3BDGB 4UPHA 5LRNA 4LQYA 4KAYA 3NKQA 5AJ9A 1KH7A 2W5QA 1ELYA 4MHXA 1EW2A 1EW8A 4NWXA 4CXUA 2XR9A 3NVLA 5LIAA 3TWZA 3A52A 4FDIA 3MK1A 4B56A 1E3CP 2GA3A 2VQRA 5GOVA 3E2DA 4CXSA 5IJQA 4LRFA 4MIVA 3MK2A 4QAXA 2W5WA 3TG0A 4LRBA 1EJJA 4GTWA 1K7HA 4ZG9A 3OT9A 4LR9A 4ZG7A 3B5QA 3M8WA 4LRCA 5IJSA 3ED4A 1SHNA 1E2SP 5L0BA 3M7VA 1URBA 3TX0A 3NKPA 1EW9A 1HJKA 1ED9A 2W5VA 3WAYA 4TN0A 2W8DA 1EI6A 1E1ZP 3NKNA 1HQAA 1ED8A 1URAA 1ALJA 1KHNA 1AJCA 1ELXA 4N7TA 4GTZA 5EGHA 2W5XA 5HRTA 3BDGA 4FDJA 3SZYA 1ELZA 1KHJA 3IGZB 3DPCA 3IGYB 3SZZA 5LRMA 3KD8A 2G9YA 5KXAA 5L0KA 1O99A 5DLVA 1FSUA 3CMRA 2W5RA 2D1GA 3BDFA 1ZEBA 5DLWA 2IUCA 2IUCB 2W5SA 4GTYA 5LQQA 3M8YA 4LR2A 1ALKA 2GLQA 4UORA 4CYSA 1B8JA 3WAWA 1AJAA 1SHQA 2QZUA 3NKMA 4LREA 1KH4A 2ZKTA 5EGEA 1N2KA 3BDHA 5K4PA 1N2LA 4YR1A 4CYRA 5TJ3A 4ZGAA 1HDHA 4UOOA 3M8ZA 4UOPA 5L0EA 1O98A 4UPLA 2IFYA 4LR7A 3UN5A 4KAVA 4LRDA 5DLTA 4UPKA 3NKRA 4GTXA 1EQJA 4UPIA 1ALIA 3WAXA 1KH9A 2RH6A 1E33P 1Y7AA 2W5TA 2X98A 2XRGA 5GRRA 4KJGA 4CXKA 1ZEDA 1KHLA 1AJBA 1P49A 5C66A 2GSNA 3UN3A 3MK0A 5INHA 1Y6VA 1ANJA 2GSOA 3T00A 3DYCA
chains in the Genus database with same CATH topology
3UO0A 4KM4A 1AUKA 1ZEFA 3UNYA 1AJDA 3WAVA 3NKOA 1KH5A 3LXQA 4MY4A 3WBHA 1ALHA 1KHKA 3IDDA 4NWJA 4KJDA 1ANIA 2W8SA 4LRAA 3T02A 3UN2A 3T01A 2ANHA 4LR8A 4ZG6A 2GSUA 3Q3QA 3BDGB 4UPHA 5LRNA 4LQYA 4KAYA 3NKQA 5AJ9A 1KH7A 2W5QA 1ELYA 4MHXA 1EW2A 1EW8A 4NWXA 4CXUA 2XR9A 3NVLA 5LIAA 3TWZA 3A52A 4FDIA 3MK1A 4B56A 1E3CP 2GA3A 2VQRA 5GOVA 3E2DA 4CXSA 5IJQA 4LRFA 4MIVA 3MK2A 4QAXA 2W5WA 3TG0A 4LRBA 1EJJA 4GTWA 1K7HA 4ZG9A 3OT9A 4LR9A 4ZG7A 3B5QA 3M8WA 4LRCA 5IJSA 3ED4A 1SHNA 1E2SP 5L0BA 3M7VA 1URBA 3TX0A 3NKPA 1EW9A 1HJKA 1ED9A 2W5VA 3WAYA 4TN0A 2W8DA 1EI6A 1E1ZP 3NKNA 1HQAA 1ED8A 1URAA 1ALJA 1KHNA 1AJCA 1ELXA 4N7TA 4GTZA 5EGHA 2W5XA 5HRTA 3BDGA 4FDJA 3SZYA 1ELZA 1KHJA 3IGZB 3DPCA 3IGYB 3SZZA 5LRMA 3KD8A 2G9YA 5KXAA 5L0KA 1O99A 5DLVA 1FSUA 3CMRA 2W5RA 2D1GA 3BDFA 1ZEBA 5DLWA 2IUCA 2IUCB 2W5SA 4GTYA 5LQQA 3M8YA 4LR2A 1ALKA 2GLQA 4UORA 4CYSA 1B8JA 3WAWA 1AJAA 1SHQA 2QZUA 3NKMA 4LREA 1KH4A 2ZKTA 5EGEA 1N2KA 3BDHA 5K4PA 1N2LA 4YR1A 4CYRA 5TJ3A 4ZGAA 1HDHA 4UOOA 3M8ZA 4UOPA 5L0EA 1O98A 4UPLA 2IFYA 4LR7A 3UN5A 4KAVA 4LRDA 5DLTA 4UPKA 3NKRA 4GTXA 1EQJA 4UPIA 1ALIA 3WAXA 1KH9A 2RH6A 1E33P 1Y7AA 2W5TA 2X98A 2XRGA 5GRRA 4KJGA 4CXKA 1ZEDA 1KHLA 1AJBA 1P49A 5C66A 2GSNA 3UN3A 3MK0A 5INHA 1Y6VA 1ANJA 2GSOA 3T00A 3DYCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UO0 A;  4KM4 A;  1AUK A;  1ZEF A;  3UNY A;  1AJD A;  3WAV A;  3NKO A;  1KH5 A;  3LXQ A;  4MY4 A;  3WBH A;  1ALH A;  1KHK A;  3IDD A;  4NWJ A;  4KJD A;  1ANI A;  2W8S A;  4LRA A;  3T02 A;  3UN2 A;  3T01 A;  2ANH A;  4LR8 A;  4ZG6 A;  2GSU A;  3Q3Q A;  3BDG B;  4UPH A;  5LRN A;  4LQY A;  4KAY A;  3NKQ A;  5AJ9 A;  1KH7 A;  2W5Q A;  1ELY A;  4MHX A;  1EW2 A;  1EW8 A;  4NWX A;  4CXU A;  2XR9 A;  3NVL A;  5LIA A;  3TWZ A;  3A52 A;  4FDI A;  3MK1 A;  4B56 A;  1E3C P;  2GA3 A;  2VQR A;  5GOV A;  3E2D A;  4CXS A;  5IJQ A;  4LRF A;  4MIV A;  3MK2 A;  4QAX A;  2W5W A;  3TG0 A;  4LRB A;  1EJJ A;  4GTW A;  1K7H A;  4ZG9 A;  3OT9 A;  4LR9 A;  4ZG7 A;  3B5Q A;  3M8W A;  4LRC A;  5IJS A;  3ED4 A;  1SHN A;  1E2S P;  5L0B A;  3M7V A;  1URB A;  3TX0 A;  3NKP A;  1EW9 A;  1HJK A;  1ED9 A;  2W5V A;  3WAY A;  4TN0 A;  2W8D A;  1EI6 A;  1E1Z P;  3NKN A;  1HQA A;  1ED8 A;  1URA A;  1ALJ A;  1KHN A;  1AJC A;  1ELX A;  4N7T A;  4GTZ A;  5EGH A;  2W5X A;  5HRT A;  3BDG A;  4FDJ A;  3SZY A;  1ELZ A;  1KHJ A;  3IGZ B;  3DPC A;  3IGY B;  3SZZ A;  5LRM A;  3KD8 A;  2G9Y A;  5KXA A;  5L0K A;  1O99 A;  5DLV A;  1FSU A;  3CMR A;  2W5R A;  2D1G A;  3BDF A;  1ZEB A;  5DLW A;  2IUC A;  2IUC B;  2W5S A;  4GTY A;  5LQQ A;  3M8Y A;  4LR2 A;  1ALK A;  2GLQ A;  4UOR A;  4CYS A;  1B8J A;  3WAW A;  1AJA A;  1SHQ A;  2QZU A;  3NKM A;  4LRE A;  1KH4 A;  2ZKT A;  5EGE A;  1N2K A;  3BDH A;  5K4P A;  1N2L A;  4YR1 A;  4CYR A;  5TJ3 A;  4ZGA A;  1HDH A;  4UOO A;  3M8Z A;  4UOP A;  5L0E A;  1O98 A;  4UPL A;  2IFY A;  4LR7 A;  3UN5 A;  4KAV A;  4LRD A;  5DLT A;  4UPK A;  3NKR A;  4GTX A;  1EQJ A;  4UPI A;  1ALI A;  3WAX A;  1KH9 A;  2RH6 A;  1E33 P;  1Y7A A;  2W5T A;  2X98 A;  2XRG A;  5GRR A;  4KJG A;  4CXK A;  1ZED A;  1KHL A;  1AJB A;  1P49 A;  5C66 A;  2GSN A;  3UN3 A;  3MK0 A;  5INH A;  1Y6V A;  1ANJ A;  2GSO A;  3T00 A;  3DYC A; 
#chains in the Genus database with same CATH topology
 3UO0 A;  4KM4 A;  1AUK A;  1ZEF A;  3UNY A;  1AJD A;  3WAV A;  3NKO A;  1KH5 A;  3LXQ A;  4MY4 A;  3WBH A;  1ALH A;  1KHK A;  3IDD A;  4NWJ A;  4KJD A;  1ANI A;  2W8S A;  4LRA A;  3T02 A;  3UN2 A;  3T01 A;  2ANH A;  4LR8 A;  4ZG6 A;  2GSU A;  3Q3Q A;  3BDG B;  4UPH A;  5LRN A;  4LQY A;  4KAY A;  3NKQ A;  5AJ9 A;  1KH7 A;  2W5Q A;  1ELY A;  4MHX A;  1EW2 A;  1EW8 A;  4NWX A;  4CXU A;  2XR9 A;  3NVL A;  5LIA A;  3TWZ A;  3A52 A;  4FDI A;  3MK1 A;  4B56 A;  1E3C P;  2GA3 A;  2VQR A;  5GOV A;  3E2D A;  4CXS A;  5IJQ A;  4LRF A;  4MIV A;  3MK2 A;  4QAX A;  2W5W A;  3TG0 A;  4LRB A;  1EJJ A;  4GTW A;  1K7H A;  4ZG9 A;  3OT9 A;  4LR9 A;  4ZG7 A;  3B5Q A;  3M8W A;  4LRC A;  5IJS A;  3ED4 A;  1SHN A;  1E2S P;  5L0B A;  3M7V A;  1URB A;  3TX0 A;  3NKP A;  1EW9 A;  1HJK A;  1ED9 A;  2W5V A;  3WAY A;  4TN0 A;  2W8D A;  1EI6 A;  1E1Z P;  3NKN A;  1HQA A;  1ED8 A;  1URA A;  1ALJ A;  1KHN A;  1AJC A;  1ELX A;  4N7T A;  4GTZ A;  5EGH A;  2W5X A;  5HRT A;  3BDG A;  4FDJ A;  3SZY A;  1ELZ A;  1KHJ A;  3IGZ B;  3DPC A;  3IGY B;  3SZZ A;  5LRM A;  3KD8 A;  2G9Y A;  5KXA A;  5L0K A;  1O99 A;  5DLV A;  1FSU A;  3CMR A;  2W5R A;  2D1G A;  3BDF A;  1ZEB A;  5DLW A;  2IUC A;  2IUC B;  2W5S A;  4GTY A;  5LQQ A;  3M8Y A;  4LR2 A;  1ALK A;  2GLQ A;  4UOR A;  4CYS A;  1B8J A;  3WAW A;  1AJA A;  1SHQ A;  2QZU A;  3NKM A;  4LRE A;  1KH4 A;  2ZKT A;  5EGE A;  1N2K A;  3BDH A;  5K4P A;  1N2L A;  4YR1 A;  4CYR A;  5TJ3 A;  4ZGA A;  1HDH A;  4UOO A;  3M8Z A;  4UOP A;  5L0E A;  1O98 A;  4UPL A;  2IFY A;  4LR7 A;  3UN5 A;  4KAV A;  4LRD A;  5DLT A;  4UPK A;  3NKR A;  4GTX A;  1EQJ A;  4UPI A;  1ALI A;  3WAX A;  1KH9 A;  2RH6 A;  1E33 P;  1Y7A A;  2W5T A;  2X98 A;  2XRG A;  5GRR A;  4KJG A;  4CXK A;  1ZED A;  1KHL A;  1AJB A;  1P49 A;  5C66 A;  2GSN A;  3UN3 A;  3MK0 A;  5INH A;  1Y6V A;  1ANJ A;  2GSO A;  3T00 A;  3DYC A; 
#chains in the Genus database with same CATH homology
 3UO0 A;  4KM4 A;  1AUK A;  1ZEF A;  3UNY A;  1AJD A;  3WAV A;  3NKO A;  1KH5 A;  3LXQ A;  4MY4 A;  3WBH A;  1ALH A;  1KHK A;  3IDD A;  4NWJ A;  4KJD A;  1ANI A;  2W8S A;  4LRA A;  3T02 A;  3UN2 A;  3T01 A;  2ANH A;  4LR8 A;  4ZG6 A;  2GSU A;  3Q3Q A;  3BDG B;  4UPH A;  5LRN A;  4LQY A;  4KAY A;  3NKQ A;  5AJ9 A;  1KH7 A;  2W5Q A;  1ELY A;  4MHX A;  1EW2 A;  1EW8 A;  4NWX A;  4CXU A;  2XR9 A;  3NVL A;  5LIA A;  3TWZ A;  3A52 A;  4FDI A;  3MK1 A;  4B56 A;  1E3C P;  2GA3 A;  2VQR A;  5GOV A;  3E2D A;  4CXS A;  5IJQ A;  4LRF A;  4MIV A;  3MK2 A;  4QAX A;  2W5W A;  3TG0 A;  4LRB A;  1EJJ A;  4GTW A;  1K7H A;  4ZG9 A;  3OT9 A;  4LR9 A;  4ZG7 A;  3B5Q A;  3M8W A;  4LRC A;  5IJS A;  3ED4 A;  1SHN A;  1E2S P;  5L0B A;  3M7V A;  1URB A;  3TX0 A;  3NKP A;  1EW9 A;  1HJK A;  1ED9 A;  2W5V A;  3WAY A;  4TN0 A;  2W8D A;  1EI6 A;  1E1Z P;  3NKN A;  1HQA A;  1ED8 A;  1URA A;  1ALJ A;  1KHN A;  1AJC A;  1ELX A;  4N7T A;  4GTZ A;  5EGH A;  2W5X A;  5HRT A;  3BDG A;  4FDJ A;  3SZY A;  1ELZ A;  1KHJ A;  3IGZ B;  3DPC A;  3IGY B;  3SZZ A;  5LRM A;  3KD8 A;  2G9Y A;  5KXA A;  5L0K A;  1O99 A;  5DLV A;  1FSU A;  3CMR A;  2W5R A;  2D1G A;  3BDF A;  1ZEB A;  5DLW A;  2IUC A;  2IUC B;  2W5S A;  4GTY A;  5LQQ A;  3M8Y A;  4LR2 A;  1ALK A;  2GLQ A;  4UOR A;  4CYS A;  1B8J A;  3WAW A;  1AJA A;  1SHQ A;  2QZU A;  3NKM A;  4LRE A;  1KH4 A;  2ZKT A;  5EGE A;  1N2K A;  3BDH A;  5K4P A;  1N2L A;  4YR1 A;  4CYR A;  5TJ3 A;  4ZGA A;  1HDH A;  4UOO A;  3M8Z A;  4UOP A;  5L0E A;  1O98 A;  4UPL A;  2IFY A;  4LR7 A;  3UN5 A;  4KAV A;  4LRD A;  5DLT A;  4UPK A;  3NKR A;  4GTX A;  1EQJ A;  4UPI A;  1ALI A;  3WAX A;  1KH9 A;  2RH6 A;  1E33 P;  1Y7A A;  2W5T A;  2X98 A;  2XRG A;  5GRR A;  4KJG A;  4CXK A;  1ZED A;  1KHL A;  1AJB A;  1P49 A;  5C66 A;  2GSN A;  3UN3 A;  3MK0 A;  5INH A;  1Y6V A;  1ANJ A;  2GSO A;  3T00 A;  3DYC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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