2IFYA

Structure of bacillus anthracis cofactor-independent phosphoglucerate mutase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
Knots found
sequence length
508
structure length
508
Chain Sequence
RKPTALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHTTLTACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKETGVGQFATISGRYYSMDRDKRWDRVEKCYRAMVNGEGPTYKSAEECVEDSYANGIYDEFVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNGDFREFDRGEKVPHIPEFVCMTHFSETVDGYVAFKPMNLDNTLGEVVAQAGLKQLRIAETEKYPHVTFFFSGGREAEFPGEERILINSPKVATYDLKPEMSIYEVTDALVNEIENDKHDVIILNFANCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADEELTSEGEPMTAHTTNPVPFIVTKNDVELREDGILGDIAPTMLTLLGVEQPKEMTGKTIIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Structure and Molecular Mechanism of Bacillus anthracis Cofactor-Independent Phosphoglycerate Mutase: A Crucial Enzyme for Spores and Growing Cells of Bacillus Species.
pubmed doi rcsb
source organism Bacillus anthracis
molecule tags Isomerase
total genus 156
structure length 508
sequence length 508
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2006-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2ifyA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 2ifyA02
5GOVA 5L0EA 3T02A 4KAVA 4CXSA 4LRDA 1E1ZP 4MHXA 2XR9A 3ED4A 2IUCB 2ANHA 5TJ3A 5HRTA 1ED9A 1KHLA 4GTXA 3MK2A 3E2DA 1N2KA 2GA3A 1E2SP 4ZGAA 2W5VA 2ZKTA 4UOOA 1ALKA 2QZUA 4FDJA 3WAVA 5AJ9A 3BDGB 1URBA 2W5TA 1AJDA 4LR7A 4UPKA 5DLTA 3BDHA 3B5QA 1EW8A 3WAWA 5LQQA 1O98A 3CMRA 1O99A 4MIVA 1ED8A 1E33P 4LR9A 5IJQA 1ELYA 4CYSA 1HDHA 3IGZB 4YR1A 1HQAA 1ALIA 4NWJA 1AJCA 3OT9A 1AJBA 4N7TA 1P49A 3M7VA 4ZG6A 4LRBA 5LIAA 3BDFA 5KXAA 4UOPA 4QAXA 5IJSA 3M8YA 4KJGA 5DLVA 2IUCA 3UN5A 1Y7AA 3SZYA 2W5XA 2W5QA 1EW9A 1KH5A 2W5SA 4KJDA 1EI6A 5GRRA 3MK0A 5K4PA 2W5WA 5INHA 4LR8A 3UNYA 4CXUA 3SZZA 3BDGA 4LQYA 3NKNA 1ELZA 4GTWA 4TN0A 1ANJA 1KH9A 2GSOA 4LREA 3TWZA 1AJAA 4LR2A 1HJKA 3UN3A 1KHNA 1EJJA 3IGYB 5LRMA 1KH7A 4KAYA 4ZG7A 4GTYA 4LRAA 3M8ZA 4LRCA 1E3CP 3T01A 2G9YA 3M8WA 3KD8A 3NKMA 5DLWA 2VQRA 3TG0A 1URAA 3UO0A 3T00A 3TX0A 3DYCA 4CYRA 1KH4A 4FDIA 2RH6A 3UN2A 5L0KA 4UPHA 4UPIA 1KHJA 1B8JA 2IFYA 3WAXA 3NKRA 5EGEA 1ANIA 1EQJA 5L0BA 1ZEFA 1N2LA 2D1GA 4B56A 1KHKA 3WBHA 3NKPA 4CXKA 1SHQA 1Y6VA 2GSNA 5C66A 2W8DA 3LXQA 3MK1A 3NVLA 1ALHA 3NKQA 1EW2A 4UORA 4MY4A 3IDDA 3WAYA 1AUKA 1FSUA 4UPLA 2XRGA 1ZEDA 1ZEBA 3DPCA 3NKOA 4GTZA 4NWXA 1ELXA 2W5RA 1K7HA 4LRFA 3A52A 1ALJA 2W8SA 2GLQA 5LRNA 3Q3QA 1SHNA 4KM4A 4ZG9A 5EGHA 2GSUA 2X98A
chains in the Genus database with same CATH superfamily
5GOVA 5L0EA 3T02A 4KAVA 4CXSA 4LRDA 1E1ZP 4MHXA 2XR9A 3ED4A 2IUCB 2ANHA 5TJ3A 5HRTA 1ED9A 1KHLA 4GTXA 3MK2A 3E2DA 1N2KA 2GA3A 1E2SP 4ZGAA 2W5VA 2ZKTA 4UOOA 1ALKA 2QZUA 4FDJA 3WAVA 5AJ9A 3BDGB 1URBA 2W5TA 1AJDA 4LR7A 4UPKA 5DLTA 3BDHA 3B5QA 1EW8A 3WAWA 5LQQA 1O98A 3CMRA 1O99A 4MIVA 1ED8A 1E33P 4LR9A 5IJQA 1ELYA 4CYSA 1HDHA 3IGZB 4YR1A 1HQAA 1ALIA 4NWJA 1AJCA 3OT9A 1AJBA 4N7TA 1P49A 3M7VA 4ZG6A 4LRBA 5LIAA 3BDFA 5KXAA 4UOPA 4QAXA 5IJSA 3M8YA 4KJGA 5DLVA 2IUCA 3UN5A 1Y7AA 3SZYA 2W5XA 2W5QA 1EW9A 1KH5A 2W5SA 4KJDA 1EI6A 5GRRA 3MK0A 5K4PA 2W5WA 5INHA 4LR8A 3UNYA 4CXUA 3SZZA 3BDGA 4LQYA 3NKNA 1ELZA 4GTWA 4TN0A 1ANJA 1KH9A 2GSOA 4LREA 3TWZA 1AJAA 4LR2A 1HJKA 3UN3A 1KHNA 1EJJA 3IGYB 5LRMA 1KH7A 4KAYA 4ZG7A 4GTYA 4LRAA 3M8ZA 4LRCA 1E3CP 3T01A 2G9YA 3M8WA 3KD8A 3NKMA 5DLWA 2VQRA 3TG0A 1URAA 3UO0A 3T00A 3TX0A 3DYCA 4CYRA 1KH4A 4FDIA 2RH6A 3UN2A 5L0KA 4UPHA 4UPIA 1KHJA 1B8JA 2IFYA 3WAXA 3NKRA 5EGEA 1ANIA 1EQJA 5L0BA 1ZEFA 1N2LA 2D1GA 4B56A 1KHKA 3WBHA 3NKPA 4CXKA 1SHQA 1Y6VA 2GSNA 5C66A 2W8DA 3LXQA 3MK1A 3NVLA 1ALHA 3NKQA 1EW2A 4UORA 4MY4A 3IDDA 3WAYA 1AUKA 1FSUA 4UPLA 2XRGA 1ZEDA 1ZEBA 3DPCA 3NKOA 4GTZA 4NWXA 1ELXA 2W5RA 1K7HA 4LRFA 3A52A 1ALJA 2W8SA 2GLQA 5LRNA 3Q3QA 1SHNA 4KM4A 4ZG9A 5EGHA 2GSUA 2X98A
chains in the Genus database with same CATH topology
5GOVA 5L0EA 3T02A 4KAVA 4CXSA 4LRDA 1E1ZP 4MHXA 2XR9A 3ED4A 2IUCB 2ANHA 5TJ3A 5HRTA 1ED9A 1KHLA 4GTXA 3MK2A 3E2DA 1N2KA 2GA3A 1E2SP 4ZGAA 2W5VA 2ZKTA 4UOOA 1ALKA 2QZUA 4FDJA 3WAVA 5AJ9A 3BDGB 1URBA 2W5TA 1AJDA 4LR7A 4UPKA 5DLTA 3BDHA 3B5QA 1EW8A 3WAWA 5LQQA 1O98A 3CMRA 1O99A 4MIVA 1ED8A 1E33P 4LR9A 5IJQA 1ELYA 4CYSA 1HDHA 3IGZB 4YR1A 1HQAA 1ALIA 4NWJA 1AJCA 3OT9A 1AJBA 4N7TA 1P49A 3M7VA 4ZG6A 4LRBA 5LIAA 3BDFA 5KXAA 4UOPA 4QAXA 5IJSA 3M8YA 4KJGA 5DLVA 2IUCA 3UN5A 1Y7AA 3SZYA 2W5XA 2W5QA 1EW9A 1KH5A 2W5SA 4KJDA 1EI6A 5GRRA 3MK0A 5K4PA 2W5WA 5INHA 4LR8A 3UNYA 4CXUA 3SZZA 3BDGA 4LQYA 3NKNA 1ELZA 4GTWA 4TN0A 1ANJA 1KH9A 2GSOA 4LREA 3TWZA 1AJAA 4LR2A 1HJKA 3UN3A 1KHNA 1EJJA 3IGYB 5LRMA 1KH7A 4KAYA 4ZG7A 4GTYA 4LRAA 3M8ZA 4LRCA 1E3CP 3T01A 2G9YA 3M8WA 3KD8A 3NKMA 5DLWA 2VQRA 3TG0A 1URAA 3UO0A 3T00A 3TX0A 3DYCA 4CYRA 1KH4A 4FDIA 2RH6A 3UN2A 5L0KA 4UPHA 4UPIA 1KHJA 1B8JA 2IFYA 3WAXA 3NKRA 5EGEA 1ANIA 1EQJA 5L0BA 1ZEFA 1N2LA 2D1GA 4B56A 1KHKA 3WBHA 3NKPA 4CXKA 1SHQA 1Y6VA 2GSNA 5C66A 2W8DA 3LXQA 3MK1A 3NVLA 1ALHA 3NKQA 1EW2A 4UORA 4MY4A 3IDDA 3WAYA 1AUKA 1FSUA 4UPLA 2XRGA 1ZEDA 1ZEBA 3DPCA 3NKOA 4GTZA 4NWXA 1ELXA 2W5RA 1K7HA 4LRFA 3A52A 1ALJA 2W8SA 2GLQA 5LRNA 3Q3QA 1SHNA 4KM4A 4ZG9A 5EGHA 2GSUA 2X98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GOV A;  5L0E A;  3T02 A;  4KAV A;  4CXS A;  4LRD A;  1E1Z P;  4MHX A;  2XR9 A;  3ED4 A;  2IUC B;  2ANH A;  5TJ3 A;  5HRT A;  1ED9 A;  1KHL A;  4GTX A;  3MK2 A;  3E2D A;  1N2K A;  2GA3 A;  1E2S P;  4ZGA A;  2W5V A;  2ZKT A;  4UOO A;  1ALK A;  2QZU A;  4FDJ A;  3WAV A;  5AJ9 A;  3BDG B;  1URB A;  2W5T A;  1AJD A;  4LR7 A;  4UPK A;  5DLT A;  3BDH A;  3B5Q A;  1EW8 A;  3WAW A;  5LQQ A;  1O98 A;  3CMR A;  1O99 A;  4MIV A;  1ED8 A;  1E33 P;  4LR9 A;  5IJQ A;  1ELY A;  4CYS A;  1HDH A;  3IGZ B;  4YR1 A;  1HQA A;  1ALI A;  4NWJ A;  1AJC A;  3OT9 A;  1AJB A;  4N7T A;  1P49 A;  3M7V A;  4ZG6 A;  4LRB A;  5LIA A;  3BDF A;  5KXA A;  4UOP A;  4QAX A;  5IJS A;  3M8Y A;  4KJG A;  5DLV A;  2IUC A;  3UN5 A;  1Y7A A;  3SZY A;  2W5X A;  2W5Q A;  1EW9 A;  1KH5 A;  2W5S A;  4KJD A;  1EI6 A;  5GRR A;  3MK0 A;  5K4P A;  2W5W A;  5INH A;  4LR8 A;  3UNY A;  4CXU A;  3SZZ A;  3BDG A;  4LQY A;  3NKN A;  1ELZ A;  4GTW A;  4TN0 A;  1ANJ A;  1KH9 A;  2GSO A;  4LRE A;  3TWZ A;  1AJA A;  4LR2 A;  1HJK A;  3UN3 A;  1KHN A;  1EJJ A;  3IGY B;  5LRM A;  1KH7 A;  4KAY A;  4ZG7 A;  4GTY A;  4LRA A;  3M8Z A;  4LRC A;  1E3C P;  3T01 A;  2G9Y A;  3M8W A;  3KD8 A;  3NKM A;  5DLW A;  2VQR A;  3TG0 A;  1URA A;  3UO0 A;  3T00 A;  3TX0 A;  3DYC A;  4CYR A;  1KH4 A;  4FDI A;  2RH6 A;  3UN2 A;  5L0K A;  4UPH A;  4UPI A;  1KHJ A;  1B8J A;  2IFY A;  3WAX A;  3NKR A;  5EGE A;  1ANI A;  1EQJ A;  5L0B A;  1ZEF A;  1N2L A;  2D1G A;  4B56 A;  1KHK A;  3WBH A;  3NKP A;  4CXK A;  1SHQ A;  1Y6V A;  2GSN A;  5C66 A;  2W8D A;  3LXQ A;  3MK1 A;  3NVL A;  1ALH A;  3NKQ A;  1EW2 A;  4UOR A;  4MY4 A;  3IDD A;  3WAY A;  1AUK A;  1FSU A;  4UPL A;  2XRG A;  1ZED A;  1ZEB A;  3DPC A;  3NKO A;  4GTZ A;  4NWX A;  1ELX A;  2W5R A;  1K7H A;  4LRF A;  3A52 A;  1ALJ A;  2W8S A;  2GLQ A;  5LRN A;  3Q3Q A;  1SHN A;  4KM4 A;  4ZG9 A;  5EGH A;  2GSU A;  2X98 A; 
#chains in the Genus database with same CATH topology
 5GOV A;  5L0E A;  3T02 A;  4KAV A;  4CXS A;  4LRD A;  1E1Z P;  4MHX A;  2XR9 A;  3ED4 A;  2IUC B;  2ANH A;  5TJ3 A;  5HRT A;  1ED9 A;  1KHL A;  4GTX A;  3MK2 A;  3E2D A;  1N2K A;  2GA3 A;  1E2S P;  4ZGA A;  2W5V A;  2ZKT A;  4UOO A;  1ALK A;  2QZU A;  4FDJ A;  3WAV A;  5AJ9 A;  3BDG B;  1URB A;  2W5T A;  1AJD A;  4LR7 A;  4UPK A;  5DLT A;  3BDH A;  3B5Q A;  1EW8 A;  3WAW A;  5LQQ A;  1O98 A;  3CMR A;  1O99 A;  4MIV A;  1ED8 A;  1E33 P;  4LR9 A;  5IJQ A;  1ELY A;  4CYS A;  1HDH A;  3IGZ B;  4YR1 A;  1HQA A;  1ALI A;  4NWJ A;  1AJC A;  3OT9 A;  1AJB A;  4N7T A;  1P49 A;  3M7V A;  4ZG6 A;  4LRB A;  5LIA A;  3BDF A;  5KXA A;  4UOP A;  4QAX A;  5IJS A;  3M8Y A;  4KJG A;  5DLV A;  2IUC A;  3UN5 A;  1Y7A A;  3SZY A;  2W5X A;  2W5Q A;  1EW9 A;  1KH5 A;  2W5S A;  4KJD A;  1EI6 A;  5GRR A;  3MK0 A;  5K4P A;  2W5W A;  5INH A;  4LR8 A;  3UNY A;  4CXU A;  3SZZ A;  3BDG A;  4LQY A;  3NKN A;  1ELZ A;  4GTW A;  4TN0 A;  1ANJ A;  1KH9 A;  2GSO A;  4LRE A;  3TWZ A;  1AJA A;  4LR2 A;  1HJK A;  3UN3 A;  1KHN A;  1EJJ A;  3IGY B;  5LRM A;  1KH7 A;  4KAY A;  4ZG7 A;  4GTY A;  4LRA A;  3M8Z A;  4LRC A;  1E3C P;  3T01 A;  2G9Y A;  3M8W A;  3KD8 A;  3NKM A;  5DLW A;  2VQR A;  3TG0 A;  1URA A;  3UO0 A;  3T00 A;  3TX0 A;  3DYC A;  4CYR A;  1KH4 A;  4FDI A;  2RH6 A;  3UN2 A;  5L0K A;  4UPH A;  4UPI A;  1KHJ A;  1B8J A;  2IFY A;  3WAX A;  3NKR A;  5EGE A;  1ANI A;  1EQJ A;  5L0B A;  1ZEF A;  1N2L A;  2D1G A;  4B56 A;  1KHK A;  3WBH A;  3NKP A;  4CXK A;  1SHQ A;  1Y6V A;  2GSN A;  5C66 A;  2W8D A;  3LXQ A;  3MK1 A;  3NVL A;  1ALH A;  3NKQ A;  1EW2 A;  4UOR A;  4MY4 A;  3IDD A;  3WAY A;  1AUK A;  1FSU A;  4UPL A;  2XRG A;  1ZED A;  1ZEB A;  3DPC A;  3NKO A;  4GTZ A;  4NWX A;  1ELX A;  2W5R A;  1K7H A;  4LRF A;  3A52 A;  1ALJ A;  2W8S A;  2GLQ A;  5LRN A;  3Q3Q A;  1SHN A;  4KM4 A;  4ZG9 A;  5EGH A;  2GSU A;  2X98 A; 
#chains in the Genus database with same CATH homology
 5GOV A;  5L0E A;  3T02 A;  4KAV A;  4CXS A;  4LRD A;  1E1Z P;  4MHX A;  2XR9 A;  3ED4 A;  2IUC B;  2ANH A;  5TJ3 A;  5HRT A;  1ED9 A;  1KHL A;  4GTX A;  3MK2 A;  3E2D A;  1N2K A;  2GA3 A;  1E2S P;  4ZGA A;  2W5V A;  2ZKT A;  4UOO A;  1ALK A;  2QZU A;  4FDJ A;  3WAV A;  5AJ9 A;  3BDG B;  1URB A;  2W5T A;  1AJD A;  4LR7 A;  4UPK A;  5DLT A;  3BDH A;  3B5Q A;  1EW8 A;  3WAW A;  5LQQ A;  1O98 A;  3CMR A;  1O99 A;  4MIV A;  1ED8 A;  1E33 P;  4LR9 A;  5IJQ A;  1ELY A;  4CYS A;  1HDH A;  3IGZ B;  4YR1 A;  1HQA A;  1ALI A;  4NWJ A;  1AJC A;  3OT9 A;  1AJB A;  4N7T A;  1P49 A;  3M7V A;  4ZG6 A;  4LRB A;  5LIA A;  3BDF A;  5KXA A;  4UOP A;  4QAX A;  5IJS A;  3M8Y A;  4KJG A;  5DLV A;  2IUC A;  3UN5 A;  1Y7A A;  3SZY A;  2W5X A;  2W5Q A;  1EW9 A;  1KH5 A;  2W5S A;  4KJD A;  1EI6 A;  5GRR A;  3MK0 A;  5K4P A;  2W5W A;  5INH A;  4LR8 A;  3UNY A;  4CXU A;  3SZZ A;  3BDG A;  4LQY A;  3NKN A;  1ELZ A;  4GTW A;  4TN0 A;  1ANJ A;  1KH9 A;  2GSO A;  4LRE A;  3TWZ A;  1AJA A;  4LR2 A;  1HJK A;  3UN3 A;  1KHN A;  1EJJ A;  3IGY B;  5LRM A;  1KH7 A;  4KAY A;  4ZG7 A;  4GTY A;  4LRA A;  3M8Z A;  4LRC A;  1E3C P;  3T01 A;  2G9Y A;  3M8W A;  3KD8 A;  3NKM A;  5DLW A;  2VQR A;  3TG0 A;  1URA A;  3UO0 A;  3T00 A;  3TX0 A;  3DYC A;  4CYR A;  1KH4 A;  4FDI A;  2RH6 A;  3UN2 A;  5L0K A;  4UPH A;  4UPI A;  1KHJ A;  1B8J A;  2IFY A;  3WAX A;  3NKR A;  5EGE A;  1ANI A;  1EQJ A;  5L0B A;  1ZEF A;  1N2L A;  2D1G A;  4B56 A;  1KHK A;  3WBH A;  3NKP A;  4CXK A;  1SHQ A;  1Y6V A;  2GSN A;  5C66 A;  2W8D A;  3LXQ A;  3MK1 A;  3NVL A;  1ALH A;  3NKQ A;  1EW2 A;  4UOR A;  4MY4 A;  3IDD A;  3WAY A;  1AUK A;  1FSU A;  4UPL A;  2XRG A;  1ZED A;  1ZEB A;  3DPC A;  3NKO A;  4GTZ A;  4NWX A;  1ELX A;  2W5R A;  1K7H A;  4LRF A;  3A52 A;  1ALJ A;  2W8S A;  2GLQ A;  5LRN A;  3Q3Q A;  1SHN A;  4KM4 A;  4ZG9 A;  5EGH A;  2GSU A;  2X98 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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