2IFYA

Structure of bacillus anthracis cofactor-independent phosphoglucerate mutase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
Knots found
sequence length
508
structure length
508
Chain Sequence
RKPTALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHTTLTACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKETGVGQFATISGRYYSMDRDKRWDRVEKCYRAMVNGEGPTYKSAEECVEDSYANGIYDEFVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNGDFREFDRGEKVPHIPEFVCMTHFSETVDGYVAFKPMNLDNTLGEVVAQAGLKQLRIAETEKYPHVTFFFSGGREAEFPGEERILINSPKVATYDLKPEMSIYEVTDALVNEIENDKHDVIILNFANCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADEELTSEGEPMTAHTTNPVPFIVTKNDVELREDGILGDIAPTMLTLLGVEQPKEMTGKTIIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Structure and Molecular Mechanism of Bacillus anthracis Cofactor-Independent Phosphoglycerate Mutase: A Crucial Enzyme for Spores and Growing Cells of Bacillus Species.
pubmed doi rcsb
source organism Bacillus anthracis
total genus 156
structure length 508
sequence length 508
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2006-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2ifyA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 2ifyA02
4UPKA 3NVLA 1ED9A 3IGZB 3NKOA 4FDIA 3T01A 3TX0A 4FDJA 4CXSA 2G9YA 1EW2A 1HJKA 3DPCA 3NKQA 1AJDA 1ELXA 3Q3QA 4MIVA 4UPLA 3UN2A 1KH9A 4ZG7A 3ED4A 5AJ9A 1ALHA 1E2SP 3WAVA 2ZKTA 1E1ZP 5L0EA 1B8JA 1AJBA 3MK2A 2W5QA 1ELYA 4B56A 2W5RA 4LRAA 1E3CP 4KJGA 4GTXA 4LRDA 5K4PA 1ALJA 2W5VA 1ANIA 2IUCA 1ZEFA 2GSUA 1ZEBA 4CXUA 2W5SA 5INHA 1AUKA 1EJJA 2RH6A 4LR7A 5DLWA 3SZYA 2D1GA 3BDHA 1EW9A 3UNYA 2IUCB 4KJDA 5L0BA 1N2LA 4UPHA 3T02A 3UN3A 5EGEA 1EQJA 3OT9A 3WBHA 2IFYA 3NKNA 1N2KA 3NKPA 2GLQA 3SZZA 5C66A 5LRNA 1Y7AA 4GTYA 4NWJA 2X98A 5DLVA 3BDGA 3WAWA 4LRFA 2W8DA 1ELZA 4ZGAA 2XRGA 1O98A 1AJCA 3IDDA 1KH7A 1SHQA 4MHXA 3DYCA 5KXAA 3E2DA 4LR8A 1KHJA 3M8YA 4CYSA 1KHNA 4TN0A 3WAYA 3TG0A 2GA3A 4KAVA 5DLTA 4YR1A 1URBA 4NWXA 3BDGB 5IJQA 1ANJA 1KH5A 1FSUA 2VQRA 3KD8A 3T00A 5LIAA 5LQQA 3B5QA 1SHNA 3IGYB 1P49A 1ALIA 3UO0A 1Y6VA 2W8SA 4UORA 4LQYA 4LRCA 1EW8A 2QZUA 3LXQA 4KM4A 3A52A 3MK1A 1EI6A 1HDHA 3BDFA 1O99A 4LR9A 4UPIA 4LREA 3M7VA 4ZG6A 4N7TA 1ZEDA 4LRBA 5TJ3A 4CYRA 5L0KA 2W5WA 1ED8A 1URAA 3CMRA 4GTZA 2GSNA 2W5TA 5GOVA 1AJAA 5GRRA 1ALKA 1E33P 1KHLA 3NKRA 4KAYA 3UN5A 5HRTA 4MY4A 5LRMA 1KH4A 3NKMA 5EGHA 3MK0A 2GSOA 4UOPA 4CXKA 4UOOA 1K7HA 3M8WA 1KHKA 5IJSA 4GTWA 1HQAA 2W5XA 2XR9A 3M8ZA 4LR2A 2ANHA 4ZG9A 3TWZA 4QAXA 3WAXA
chains in the Genus database with same CATH superfamily
4UPKA 3NVLA 1ED9A 3IGZB 3NKOA 4FDIA 3T01A 3TX0A 4FDJA 4CXSA 2G9YA 1EW2A 1HJKA 3DPCA 3NKQA 1AJDA 1ELXA 3Q3QA 4MIVA 4UPLA 3UN2A 1KH9A 4ZG7A 3ED4A 5AJ9A 1ALHA 1E2SP 3WAVA 2ZKTA 1E1ZP 5L0EA 1B8JA 1AJBA 3MK2A 2W5QA 1ELYA 4B56A 2W5RA 4LRAA 1E3CP 4KJGA 4GTXA 4LRDA 5K4PA 1ALJA 2W5VA 1ANIA 2IUCA 1ZEFA 2GSUA 1ZEBA 4CXUA 2W5SA 5INHA 1AUKA 1EJJA 2RH6A 4LR7A 5DLWA 3SZYA 2D1GA 3BDHA 1EW9A 3UNYA 2IUCB 4KJDA 5L0BA 1N2LA 4UPHA 3T02A 3UN3A 5EGEA 1EQJA 3OT9A 3WBHA 2IFYA 3NKNA 1N2KA 3NKPA 2GLQA 3SZZA 5C66A 5LRNA 1Y7AA 4GTYA 4NWJA 2X98A 5DLVA 3BDGA 3WAWA 4LRFA 2W8DA 1ELZA 4ZGAA 2XRGA 1O98A 1AJCA 3IDDA 1KH7A 1SHQA 4MHXA 3DYCA 5KXAA 3E2DA 4LR8A 1KHJA 3M8YA 4CYSA 1KHNA 4TN0A 3WAYA 3TG0A 2GA3A 4KAVA 5DLTA 4YR1A 1URBA 4NWXA 3BDGB 5IJQA 1ANJA 1KH5A 1FSUA 2VQRA 3KD8A 3T00A 5LIAA 5LQQA 3B5QA 1SHNA 3IGYB 1P49A 1ALIA 3UO0A 1Y6VA 2W8SA 4UORA 4LQYA 4LRCA 1EW8A 2QZUA 3LXQA 4KM4A 3A52A 3MK1A 1EI6A 1HDHA 3BDFA 1O99A 4LR9A 4UPIA 4LREA 3M7VA 4ZG6A 4N7TA 1ZEDA 4LRBA 5TJ3A 4CYRA 5L0KA 2W5WA 1ED8A 1URAA 3CMRA 4GTZA 2GSNA 2W5TA 5GOVA 1AJAA 5GRRA 1ALKA 1E33P 1KHLA 3NKRA 4KAYA 3UN5A 5HRTA 4MY4A 5LRMA 1KH4A 3NKMA 5EGHA 3MK0A 2GSOA 4UOPA 4CXKA 4UOOA 1K7HA 3M8WA 1KHKA 5IJSA 4GTWA 1HQAA 2W5XA 2XR9A 3M8ZA 4LR2A 2ANHA 4ZG9A 3TWZA 4QAXA 3WAXA
chains in the Genus database with same CATH topology
4UPKA 3NVLA 1ED9A 3IGZB 3NKOA 4FDIA 3T01A 3TX0A 4FDJA 4CXSA 2G9YA 1EW2A 1HJKA 3DPCA 3NKQA 1AJDA 1ELXA 3Q3QA 4MIVA 4UPLA 3UN2A 1KH9A 4ZG7A 3ED4A 5AJ9A 1ALHA 1E2SP 3WAVA 2ZKTA 1E1ZP 5L0EA 1B8JA 1AJBA 3MK2A 2W5QA 1ELYA 4B56A 2W5RA 4LRAA 1E3CP 4KJGA 4GTXA 4LRDA 5K4PA 1ALJA 2W5VA 1ANIA 2IUCA 1ZEFA 2GSUA 1ZEBA 4CXUA 2W5SA 5INHA 1AUKA 1EJJA 2RH6A 4LR7A 5DLWA 3SZYA 2D1GA 3BDHA 1EW9A 3UNYA 2IUCB 4KJDA 5L0BA 1N2LA 4UPHA 3T02A 3UN3A 5EGEA 1EQJA 3OT9A 3WBHA 2IFYA 3NKNA 1N2KA 3NKPA 2GLQA 3SZZA 5C66A 5LRNA 1Y7AA 4GTYA 4NWJA 2X98A 5DLVA 3BDGA 3WAWA 4LRFA 2W8DA 1ELZA 4ZGAA 2XRGA 1O98A 1AJCA 3IDDA 1KH7A 1SHQA 4MHXA 3DYCA 5KXAA 3E2DA 4LR8A 1KHJA 3M8YA 4CYSA 1KHNA 4TN0A 3WAYA 3TG0A 2GA3A 4KAVA 5DLTA 4YR1A 1URBA 4NWXA 3BDGB 5IJQA 1ANJA 1KH5A 1FSUA 2VQRA 3KD8A 3T00A 5LIAA 5LQQA 3B5QA 1SHNA 3IGYB 1P49A 1ALIA 3UO0A 1Y6VA 2W8SA 4UORA 4LQYA 4LRCA 1EW8A 2QZUA 3LXQA 4KM4A 3A52A 3MK1A 1EI6A 1HDHA 3BDFA 1O99A 4LR9A 4UPIA 4LREA 3M7VA 4ZG6A 4N7TA 1ZEDA 4LRBA 5TJ3A 4CYRA 5L0KA 2W5WA 1ED8A 1URAA 3CMRA 4GTZA 2GSNA 2W5TA 5GOVA 1AJAA 5GRRA 1ALKA 1E33P 1KHLA 3NKRA 4KAYA 3UN5A 5HRTA 4MY4A 5LRMA 1KH4A 3NKMA 5EGHA 3MK0A 2GSOA 4UOPA 4CXKA 4UOOA 1K7HA 3M8WA 1KHKA 5IJSA 4GTWA 1HQAA 2W5XA 2XR9A 3M8ZA 4LR2A 2ANHA 4ZG9A 3TWZA 4QAXA 3WAXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UPK A;  3NVL A;  1ED9 A;  3IGZ B;  3NKO A;  4FDI A;  3T01 A;  3TX0 A;  4FDJ A;  4CXS A;  2G9Y A;  1EW2 A;  1HJK A;  3DPC A;  3NKQ A;  1AJD A;  1ELX A;  3Q3Q A;  4MIV A;  4UPL A;  3UN2 A;  1KH9 A;  4ZG7 A;  3ED4 A;  5AJ9 A;  1ALH A;  1E2S P;  3WAV A;  2ZKT A;  1E1Z P;  5L0E A;  1B8J A;  1AJB A;  3MK2 A;  2W5Q A;  1ELY A;  4B56 A;  2W5R A;  4LRA A;  1E3C P;  4KJG A;  4GTX A;  4LRD A;  5K4P A;  1ALJ A;  2W5V A;  1ANI A;  2IUC A;  1ZEF A;  2GSU A;  1ZEB A;  4CXU A;  2W5S A;  5INH A;  1AUK A;  1EJJ A;  2RH6 A;  4LR7 A;  5DLW A;  3SZY A;  2D1G A;  3BDH A;  1EW9 A;  3UNY A;  2IUC B;  4KJD A;  5L0B A;  1N2L A;  4UPH A;  3T02 A;  3UN3 A;  5EGE A;  1EQJ A;  3OT9 A;  3WBH A;  2IFY A;  3NKN A;  1N2K A;  3NKP A;  2GLQ A;  3SZZ A;  5C66 A;  5LRN A;  1Y7A A;  4GTY A;  4NWJ A;  2X98 A;  5DLV A;  3BDG A;  3WAW A;  4LRF A;  2W8D A;  1ELZ A;  4ZGA A;  2XRG A;  1O98 A;  1AJC A;  3IDD A;  1KH7 A;  1SHQ A;  4MHX A;  3DYC A;  5KXA A;  3E2D A;  4LR8 A;  1KHJ A;  3M8Y A;  4CYS A;  1KHN A;  4TN0 A;  3WAY A;  3TG0 A;  2GA3 A;  4KAV A;  5DLT A;  4YR1 A;  1URB A;  4NWX A;  3BDG B;  5IJQ A;  1ANJ A;  1KH5 A;  1FSU A;  2VQR A;  3KD8 A;  3T00 A;  5LIA A;  5LQQ A;  3B5Q A;  1SHN A;  3IGY B;  1P49 A;  1ALI A;  3UO0 A;  1Y6V A;  2W8S A;  4UOR A;  4LQY A;  4LRC A;  1EW8 A;  2QZU A;  3LXQ A;  4KM4 A;  3A52 A;  3MK1 A;  1EI6 A;  1HDH A;  3BDF A;  1O99 A;  4LR9 A;  4UPI A;  4LRE A;  3M7V A;  4ZG6 A;  4N7T A;  1ZED A;  4LRB A;  5TJ3 A;  4CYR A;  5L0K A;  2W5W A;  1ED8 A;  1URA A;  3CMR A;  4GTZ A;  2GSN A;  2W5T A;  5GOV A;  1AJA A;  5GRR A;  1ALK A;  1E33 P;  1KHL A;  3NKR A;  4KAY A;  3UN5 A;  5HRT A;  4MY4 A;  5LRM A;  1KH4 A;  3NKM A;  5EGH A;  3MK0 A;  2GSO A;  4UOP A;  4CXK A;  4UOO A;  1K7H A;  3M8W A;  1KHK A;  5IJS A;  4GTW A;  1HQA A;  2W5X A;  2XR9 A;  3M8Z A;  4LR2 A;  2ANH A;  4ZG9 A;  3TWZ A;  4QAX A;  3WAX A; 
#chains in the Genus database with same CATH topology
 4UPK A;  3NVL A;  1ED9 A;  3IGZ B;  3NKO A;  4FDI A;  3T01 A;  3TX0 A;  4FDJ A;  4CXS A;  2G9Y A;  1EW2 A;  1HJK A;  3DPC A;  3NKQ A;  1AJD A;  1ELX A;  3Q3Q A;  4MIV A;  4UPL A;  3UN2 A;  1KH9 A;  4ZG7 A;  3ED4 A;  5AJ9 A;  1ALH A;  1E2S P;  3WAV A;  2ZKT A;  1E1Z P;  5L0E A;  1B8J A;  1AJB A;  3MK2 A;  2W5Q A;  1ELY A;  4B56 A;  2W5R A;  4LRA A;  1E3C P;  4KJG A;  4GTX A;  4LRD A;  5K4P A;  1ALJ A;  2W5V A;  1ANI A;  2IUC A;  1ZEF A;  2GSU A;  1ZEB A;  4CXU A;  2W5S A;  5INH A;  1AUK A;  1EJJ A;  2RH6 A;  4LR7 A;  5DLW A;  3SZY A;  2D1G A;  3BDH A;  1EW9 A;  3UNY A;  2IUC B;  4KJD A;  5L0B A;  1N2L A;  4UPH A;  3T02 A;  3UN3 A;  5EGE A;  1EQJ A;  3OT9 A;  3WBH A;  2IFY A;  3NKN A;  1N2K A;  3NKP A;  2GLQ A;  3SZZ A;  5C66 A;  5LRN A;  1Y7A A;  4GTY A;  4NWJ A;  2X98 A;  5DLV A;  3BDG A;  3WAW A;  4LRF A;  2W8D A;  1ELZ A;  4ZGA A;  2XRG A;  1O98 A;  1AJC A;  3IDD A;  1KH7 A;  1SHQ A;  4MHX A;  3DYC A;  5KXA A;  3E2D A;  4LR8 A;  1KHJ A;  3M8Y A;  4CYS A;  1KHN A;  4TN0 A;  3WAY A;  3TG0 A;  2GA3 A;  4KAV A;  5DLT A;  4YR1 A;  1URB A;  4NWX A;  3BDG B;  5IJQ A;  1ANJ A;  1KH5 A;  1FSU A;  2VQR A;  3KD8 A;  3T00 A;  5LIA A;  5LQQ A;  3B5Q A;  1SHN A;  3IGY B;  1P49 A;  1ALI A;  3UO0 A;  1Y6V A;  2W8S A;  4UOR A;  4LQY A;  4LRC A;  1EW8 A;  2QZU A;  3LXQ A;  4KM4 A;  3A52 A;  3MK1 A;  1EI6 A;  1HDH A;  3BDF A;  1O99 A;  4LR9 A;  4UPI A;  4LRE A;  3M7V A;  4ZG6 A;  4N7T A;  1ZED A;  4LRB A;  5TJ3 A;  4CYR A;  5L0K A;  2W5W A;  1ED8 A;  1URA A;  3CMR A;  4GTZ A;  2GSN A;  2W5T A;  5GOV A;  1AJA A;  5GRR A;  1ALK A;  1E33 P;  1KHL A;  3NKR A;  4KAY A;  3UN5 A;  5HRT A;  4MY4 A;  5LRM A;  1KH4 A;  3NKM A;  5EGH A;  3MK0 A;  2GSO A;  4UOP A;  4CXK A;  4UOO A;  1K7H A;  3M8W A;  1KHK A;  5IJS A;  4GTW A;  1HQA A;  2W5X A;  2XR9 A;  3M8Z A;  4LR2 A;  2ANH A;  4ZG9 A;  3TWZ A;  4QAX A;  3WAX A; 
#chains in the Genus database with same CATH homology
 4UPK A;  3NVL A;  1ED9 A;  3IGZ B;  3NKO A;  4FDI A;  3T01 A;  3TX0 A;  4FDJ A;  4CXS A;  2G9Y A;  1EW2 A;  1HJK A;  3DPC A;  3NKQ A;  1AJD A;  1ELX A;  3Q3Q A;  4MIV A;  4UPL A;  3UN2 A;  1KH9 A;  4ZG7 A;  3ED4 A;  5AJ9 A;  1ALH A;  1E2S P;  3WAV A;  2ZKT A;  1E1Z P;  5L0E A;  1B8J A;  1AJB A;  3MK2 A;  2W5Q A;  1ELY A;  4B56 A;  2W5R A;  4LRA A;  1E3C P;  4KJG A;  4GTX A;  4LRD A;  5K4P A;  1ALJ A;  2W5V A;  1ANI A;  2IUC A;  1ZEF A;  2GSU A;  1ZEB A;  4CXU A;  2W5S A;  5INH A;  1AUK A;  1EJJ A;  2RH6 A;  4LR7 A;  5DLW A;  3SZY A;  2D1G A;  3BDH A;  1EW9 A;  3UNY A;  2IUC B;  4KJD A;  5L0B A;  1N2L A;  4UPH A;  3T02 A;  3UN3 A;  5EGE A;  1EQJ A;  3OT9 A;  3WBH A;  2IFY A;  3NKN A;  1N2K A;  3NKP A;  2GLQ A;  3SZZ A;  5C66 A;  5LRN A;  1Y7A A;  4GTY A;  4NWJ A;  2X98 A;  5DLV A;  3BDG A;  3WAW A;  4LRF A;  2W8D A;  1ELZ A;  4ZGA A;  2XRG A;  1O98 A;  1AJC A;  3IDD A;  1KH7 A;  1SHQ A;  4MHX A;  3DYC A;  5KXA A;  3E2D A;  4LR8 A;  1KHJ A;  3M8Y A;  4CYS A;  1KHN A;  4TN0 A;  3WAY A;  3TG0 A;  2GA3 A;  4KAV A;  5DLT A;  4YR1 A;  1URB A;  4NWX A;  3BDG B;  5IJQ A;  1ANJ A;  1KH5 A;  1FSU A;  2VQR A;  3KD8 A;  3T00 A;  5LIA A;  5LQQ A;  3B5Q A;  1SHN A;  3IGY B;  1P49 A;  1ALI A;  3UO0 A;  1Y6V A;  2W8S A;  4UOR A;  4LQY A;  4LRC A;  1EW8 A;  2QZU A;  3LXQ A;  4KM4 A;  3A52 A;  3MK1 A;  1EI6 A;  1HDH A;  3BDF A;  1O99 A;  4LR9 A;  4UPI A;  4LRE A;  3M7V A;  4ZG6 A;  4N7T A;  1ZED A;  4LRB A;  5TJ3 A;  4CYR A;  5L0K A;  2W5W A;  1ED8 A;  1URA A;  3CMR A;  4GTZ A;  2GSN A;  2W5T A;  5GOV A;  1AJA A;  5GRR A;  1ALK A;  1E33 P;  1KHL A;  3NKR A;  4KAY A;  3UN5 A;  5HRT A;  4MY4 A;  5LRM A;  1KH4 A;  3NKM A;  5EGH A;  3MK0 A;  2GSO A;  4UOP A;  4CXK A;  4UOO A;  1K7H A;  3M8W A;  1KHK A;  5IJS A;  4GTW A;  1HQA A;  2W5X A;  2XR9 A;  3M8Z A;  4LR2 A;  2ANH A;  4ZG9 A;  3TWZ A;  4QAX A;  3WAX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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