1VHYA

Crystal structure of haemophilus influenzae protein hi0303, pfam duf558
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
Knots found
sequence length
245
structure length
241
Chain Sequence
IPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLKIHLGQVIRMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICFGDLGEEG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Haemophilus influenzae
molecule keywords Hypothetical protein HI0303
total genus 73
structure length 241
sequence length 245
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.193: 16S rRNA (uracil(1498)-N(3))-methyltransferase.
pdb deposition date 2003-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1vhyA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1vhyA02
4YQPA 4YQ4A 1OY5A 1V2XA 1TO0A 4YQQA 4YQ3A 1UAMA 5GMBA 4IG6A 1UALA 1K3RA 2O3AA 4PZKA 3ONPA 4YQ5A 4YQ9A 3N4JA 4YQ7A 1J85A 1O6DA 4JALA 1P9PA 2EGWA 2Z0YA 4X3LA 4L69A 4RG1A 4YQNA 2V3KA 3L8UA 4XBOA 3KW2A 2NWAA 4YQLA 4YVIA 1UAKA 2CX8A 3NK6A 4H3ZA 1UAJA 2YY8A 3OINA 3N4KA 4YQRA 4YQ8A 1GZ0A 3KY7A 3GYQA 3AXZA 4YPXA 2V3JA 3BBHA 3E5YA 1X7PA 5D9FA 4MCBA 5GM8A 1VHKA 4J3CA 1IPAA 4MCCA 1V6ZA 1NS5A 4YVHA 4YPYA 4YQTA 4YQ6A 5GMCA 2HA8A 4YVKA 4H3YA 4YQAA 1Z85A 4YQSA 3KTYA 3BBDA 4X3MA 1MXIA 3DCMX 1VHYA 5FAIA 1VH0A 4YQBA 4YQJA 4CNEA 4YPWA 3ILKA 4YQ1A 4YVGA 4YQGA 2QMMA 3BBEA 4MCDA 2QWVA 3IEFA 4YVJA 4YPZA 3OIJA 4YQ2A 4FAKA 3OIIA 3QUVA 4YQIA 2I6DA 2EGVA 4CNGA 5CO4A 3KNUA 3IC6A 3O7BA 4YQOA 3AI9X 1NXZA 3AIAA 4YQKA 4CNFA 4KGNA 4KDZA 3NK7A 4CNDA 1ZJRA 4YQCA 4YQDA 4YQ0A 4E8BA 4JAKA 1X7OA
chains in the Genus database with same CATH superfamily
3W2VB 3X1LB 4YQPA 1OY5A 4YQ4A 1V2XA 1TO0A 4YQQA 4YQ3A 1UAMA 2ZJPS 5GMBA 4IG6A 1UALA 1GTRA 1K3RA 2O3AA 4PZKA 4WFNS 3ONPA 4WF9S 4YQ5A 4YQ9A 2PJJA 3N4JA 4YQ7A 1J85A 1O6DA 4UY88 5GAGW 1P9PA 4H4KA 2EGWA 4JALA 2Z0YA 4X3LA 4WFAS 1O0BA 4L69A 4RG1A 4YQNA 2HZ7A 2V3KA 3L8UA 4XBOA 3KW2A 2NWAA 4YQLA 4YVIA 1UAKA 2CX8A 1QTQA 3NK6A 4H3ZA 3CZBA 1UAJA 2YY8A 3OINA 3N4KA 4YQRA 4JWHA 2GAEA 5GAEW 3CF5S 1GZ0A 3KY7A 4YQ8A 1NYLA 3GYQA 3AXZA 4YPXA 2V3JA 5HL7S 3BBHA 3E5YA 1X7PA 5BNZA 5D9FA 5GAHW 3PIPS 4JYZA 1QRUA 4V194 4MCBA 5GM8A 1VHKA 4J3CA 1IPAA 4MCCA 1V6ZA 4IO9S 1NS5A 4YVHA 4YPYA 4YQTA 4YQ6A 5GMCA 2ZJQS 3J7ZV 2HA8A 4YVKA 1UDXA 4H3YA 4YQAA 4JXXA 1Z85A 2PNWA 2G6GA 4U67S 4YQSA 3AIIA 3KTYA 3BBDA 4X3MA 1MXIA 1QRTA 4JWFA 3DCMX 2PICA 2RE8A 1VHYA 4FMWA 5FAIA 1VH0A 2AE0X 1GTSA 5IZNA 4YQBA 4YQJA 4CNEA 4YPWA 5GADW 3ILKA 4YQ1A 4YVGA 4YQGA 2QMMA 1D6KA 3BBEA 3W2WB 5JVHS 4MCDA 2RD2A 4JWJA 1DFUP 1B75A 1QRSA 5DM7S 2QWVA 3IEFA 1EUYA 2G5DA 2PI8A 4YVJA 4YPZA 1O0CA 3OIJA 4YQ2A 4FAKA 3OIIA 3QUVA 4YQIA 4IOCS 4P2BA 2I6DA 5JVGS 2EGVA 4CNGA 5CO4A 3KNUA 3IC6A 4JWGA 5DM6S 1ZJWA 3O7BA 4WFBS 4IOAS 3AI9X 4YQOA 4H3SA 3PIOS 4JXZA 1NXZA 3AIAA 1EUQA 4YQKA 4CNFA 4KGNA 1FEUA 1EXDA 4KDZA 3NK7A 2ZJRS 3DLLS 4WCES 4CNDA 1ZJRA 4YQCA 4YQDA 4YQ0A 4E8BA 4JAKA 1X7OA
chains in the Genus database with same CATH topology
4YQPA 4YQ4A 1OY5A 1V2XA 1TO0A 4YQQA 4YQ3A 1UAMA 5GMBA 4IG6A 1UALA 1K3RA 2O3AA 4PZKA 3ONPA 4YQ5A 4YQ9A 3N4JA 4YQ7A 1J85A 1O6DA 4JALA 1P9PA 2EGWA 2Z0YA 4X3LA 4L69A 4RG1A 4YQNA 2V3KA 3L8UA 4XBOA 3KW2A 2NWAA 4YQLA 4YVIA 1UAKA 2CX8A 3NK6A 4H3ZA 1UAJA 2YY8A 3OINA 3N4KA 4YQRA 4JWHA 4YQ8A 1GZ0A 3KY7A 3GYQA 3AXZA 4YPXA 2V3JA 3BBHA 3E5YA 1X7PA 5D9FA 4MCBA 5GM8A 1VHKA 4J3CA 1IPAA 4MCCA 1V6ZA 1NS5A 4YVHA 4YPYA 4YQTA 4YQ6A 5GMCA 2HA8A 4YVKA 4H3YA 4YQAA 1Z85A 4YQSA 3KTYA 3BBDA 4X3MA 1MXIA 4JWFA 3DCMX 1VHYA 4FMWA 5FAIA 1VH0A 4YQBA 4YQJA 4CNEA 4YPWA 3ILKA 4YQ1A 4YVGA 4YQGA 2QMMA 3BBEA 4MCDA 4JWJA 2QWVA 3IEFA 4YVJA 4YPZA 3OIJA 4YQ2A 4FAKA 3OIIA 3QUVA 4YQIA 2I6DA 2EGVA 4CNGA 5CO4A 3KNUA 3IC6A 4JWGA 3O7BA 4YQOA 3AI9X 1NXZA 3AIAA 4YQKA 4CNFA 4KGNA 4KDZA 3NK7A 4CNDA 1ZJRA 4YQCA 4YQDA 4YQ0A 4E8BA 4JAKA 1X7OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQP A;  4YQ4 A;  1OY5 A;  1V2X A;  1TO0 A;  4YQQ A;  4YQ3 A;  1UAM A;  5GMB A;  4IG6 A;  1UAL A;  1K3R A;  2O3A A;  4PZK A;  3ONP A;  4YQ5 A;  4YQ9 A;  3N4J A;  4YQ7 A;  1J85 A;  1O6D A;  4JAL A;  1P9P A;  2EGW A;  2Z0Y A;  4X3L A;  4L69 A;  4RG1 A;  4YQN A;  2V3K A;  3L8U A;  4XBO A;  3KW2 A;  2NWA A;  4YQL A;  4YVI A;  1UAK A;  2CX8 A;  3NK6 A;  4H3Z A;  1UAJ A;  2YY8 A;  3OIN A;  3N4K A;  4YQR A;  4YQ8 A;  1GZ0 A;  3KY7 A;  3GYQ A;  3AXZ A;  4YPX A;  2V3J A;  3BBH A;  3E5Y A;  1X7P A;  5D9F A;  4MCB A;  5GM8 A;  1VHK A;  4J3C A;  1IPA A;  4MCC A;  1V6Z A;  1NS5 A;  4YVH A;  4YPY A;  4YQT A;  4YQ6 A;  5GMC A;  2HA8 A;  4YVK A;  4H3Y A;  4YQA A;  1Z85 A;  4YQS A;  3KTY A;  3BBD A;  4X3M A;  1MXI A;  3DCM X;  1VHY A;  5FAI A;  1VH0 A;  4YQB A;  4YQJ A;  4CNE A;  4YPW A;  3ILK A;  4YQ1 A;  4YVG A;  4YQG A;  2QMM A;  3BBE A;  4MCD A;  2QWV A;  3IEF A;  4YVJ A;  4YPZ A;  3OIJ A;  4YQ2 A;  4FAK A;  3OII A;  3QUV A;  4YQI A;  2I6D A;  2EGV A;  4CNG A;  5CO4 A;  3KNU A;  3IC6 A;  3O7B A;  4YQO A;  3AI9 X;  1NXZ A;  3AIA A;  4YQK A;  4CNF A;  4KGN A;  4KDZ A;  3NK7 A;  4CND A;  1ZJR A;  4YQC A;  4YQD A;  4YQ0 A;  4E8B A;  4JAK A;  1X7O A; 
#chains in the Genus database with same CATH topology
 3W2V B;  3X1L B;  4YQP A;  1OY5 A;  4YQ4 A;  1V2X A;  1TO0 A;  4YQQ A;  4YQ3 A;  1UAM A;  2ZJP S;  5GMB A;  4IG6 A;  1UAL A;  1GTR A;  1K3R A;  2O3A A;  4PZK A;  4WFN S;  3ONP A;  4WF9 S;  4YQ5 A;  4YQ9 A;  2PJJ A;  3N4J A;  4YQ7 A;  1J85 A;  1O6D A;  4UY8 8;  5GAG W;  1P9P A;  4H4K A;  2EGW A;  4JAL A;  2Z0Y A;  4X3L A;  4WFA S;  1O0B A;  4L69 A;  4RG1 A;  4YQN A;  2HZ7 A;  2V3K A;  3L8U A;  4XBO A;  3KW2 A;  2NWA A;  4YQL A;  4YVI A;  1UAK A;  2CX8 A;  1QTQ A;  3NK6 A;  4H3Z A;  3CZB A;  1UAJ A;  2YY8 A;  3OIN A;  3N4K A;  4YQR A;  4JWH A;  2GAE A;  5GAE W;  3CF5 S;  1GZ0 A;  3KY7 A;  4YQ8 A;  1NYL A;  3GYQ A;  3AXZ A;  4YPX A;  2V3J A;  5HL7 S;  3BBH A;  3E5Y A;  1X7P A;  5BNZ A;  5D9F A;  5GAH W;  3PIP S;  4JYZ A;  1QRU A;  4V19 4;  4MCB A;  5GM8 A;  1VHK A;  4J3C A;  1IPA A;  4MCC A;  1V6Z A;  4IO9 S;  1NS5 A;  4YVH A;  4YPY A;  4YQT A;  4YQ6 A;  5GMC A;  2ZJQ S;  3J7Z V;  2HA8 A;  4YVK A;  1UDX A;  4H3Y A;  4YQA A;  4JXX A;  1Z85 A;  2PNW A;  2G6G A;  4U67 S;  4YQS A;  3AII A;  3KTY A;  3BBD A;  4X3M A;  1MXI A;  1QRT A;  4JWF A;  3DCM X;  2PIC A;  2RE8 A;  1VHY A;  4FMW A;  5FAI A;  1VH0 A;  2AE0 X;  1GTS A;  5IZN A;  4YQB A;  4YQJ A;  4CNE A;  4YPW A;  5GAD W;  3ILK A;  4YQ1 A;  4YVG A;  4YQG A;  2QMM A;  1D6K A;  3BBE A;  3W2W B;  5JVH S;  4MCD A;  2RD2 A;  4JWJ A;  1DFU P;  1B75 A;  1QRS A;  5DM7 S;  2QWV A;  3IEF A;  1EUY A;  2G5D A;  2PI8 A;  4YVJ A;  4YPZ A;  1O0C A;  3OIJ A;  4YQ2 A;  4FAK A;  3OII A;  3QUV A;  4YQI A;  4IOC S;  4P2B A;  2I6D A;  5JVG S;  2EGV A;  4CNG A;  5CO4 A;  3KNU A;  3IC6 A;  4JWG A;  5DM6 S;  1ZJW A;  3O7B A;  4WFB S;  4IOA S;  3AI9 X;  4YQO A;  4H3S A;  3PIO S;  4JXZ A;  1NXZ A;  3AIA A;  1EUQ A;  4YQK A;  4CNF A;  4KGN A;  1FEU A;  1EXD A;  4KDZ A;  3NK7 A;  2ZJR S;  3DLL S;  4WCE S;  4CND A;  1ZJR A;  4YQC A;  4YQD A;  4YQ0 A;  4E8B A;  4JAK A;  1X7O A; 
#chains in the Genus database with same CATH homology
 4YQP A;  4YQ4 A;  1OY5 A;  1V2X A;  1TO0 A;  4YQQ A;  4YQ3 A;  1UAM A;  5GMB A;  4IG6 A;  1UAL A;  1K3R A;  2O3A A;  4PZK A;  3ONP A;  4YQ5 A;  4YQ9 A;  3N4J A;  4YQ7 A;  1J85 A;  1O6D A;  4JAL A;  1P9P A;  2EGW A;  2Z0Y A;  4X3L A;  4L69 A;  4RG1 A;  4YQN A;  2V3K A;  3L8U A;  4XBO A;  3KW2 A;  2NWA A;  4YQL A;  4YVI A;  1UAK A;  2CX8 A;  3NK6 A;  4H3Z A;  1UAJ A;  2YY8 A;  3OIN A;  3N4K A;  4YQR A;  4JWH A;  4YQ8 A;  1GZ0 A;  3KY7 A;  3GYQ A;  3AXZ A;  4YPX A;  2V3J A;  3BBH A;  3E5Y A;  1X7P A;  5D9F A;  4MCB A;  5GM8 A;  1VHK A;  4J3C A;  1IPA A;  4MCC A;  1V6Z A;  1NS5 A;  4YVH A;  4YPY A;  4YQT A;  4YQ6 A;  5GMC A;  2HA8 A;  4YVK A;  4H3Y A;  4YQA A;  1Z85 A;  4YQS A;  3KTY A;  3BBD A;  4X3M A;  1MXI A;  4JWF A;  3DCM X;  1VHY A;  4FMW A;  5FAI A;  1VH0 A;  4YQB A;  4YQJ A;  4CNE A;  4YPW A;  3ILK A;  4YQ1 A;  4YVG A;  4YQG A;  2QMM A;  3BBE A;  4MCD A;  4JWJ A;  2QWV A;  3IEF A;  4YVJ A;  4YPZ A;  3OIJ A;  4YQ2 A;  4FAK A;  3OII A;  3QUV A;  4YQI A;  2I6D A;  2EGV A;  4CNG A;  5CO4 A;  3KNU A;  3IC6 A;  4JWG A;  3O7B A;  4YQO A;  3AI9 X;  1NXZ A;  3AIA A;  4YQK A;  4CNF A;  4KGN A;  4KDZ A;  3NK7 A;  4CND A;  1ZJR A;  4YQC A;  4YQD A;  4YQ0 A;  4E8B A;  4JAK A;  1X7O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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