1KH4A

E. coli alkaline phosphatase mutant (d330n) in complex with phosphate
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
Knots found
sequence length
444
structure length
444
Chain Sequence
VLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQNHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords ALKALINE PHOSPHATASE
publication title Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
source organism Escherichia coli
total genus 154
structure length 444
sequence length 444
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1kh4A00
2ZKTA 3OT9A 4CXKA 4N7TA 1KH9A 5TJ3A 2W5XA 3CMRA 2W5SA 4ZG9A 3M8YA 3NKRA 1KHKA 2GA3A 2W5RA 4LR9A 3T01A 1URBA 2GSNA 4TN0A 1FSUA 4UPHA 4LRDA 1E1ZP 5L0BA 4LR8A 5L0KA 4ZGAA 3UN2A 1EW8A 3NKMA 4QAXA 3BDFA 3M8ZA 2G9YA 3MK0A 1URAA 3WAXA 3SZZA 3Q3QA 1K7HA 2XRGA 4MHXA 4LQYA 4LR7A 4ZG7A 1KHNA 5KXAA 1AJDA 2GSUA 1ALIA 1EW9A 1HDHA 1ELXA 3LXQA 1ELYA 4GTXA 3WAWA 2IUCB 5HRTA 1EI6A 2W5VA 4GTWA 1ED9A 1N2LA 2GLQA 3M7VA 4LRFA 3BDGA 3IDDA 3TX0A 3UN5A 1ELZA 1ZEBA 3MK2A 4UOPA 2W5QA 3T02A 3UN3A 1HJKA 5IJSA 5DLVA 1SHQA 3KD8A 5GOVA 1KH4A 3M8WA 4NWJA 4UPKA 4GTZA 5EGHA 3IGZB 1ALJA 1HQAA 1AJAA 2VQRA 4ZG6A 1KHLA 1Y6VA 1EW2A 5LRNA 1O99A 3ED4A 4LRAA 2W8DA 1AJBA 4KAYA 3MK1A 1ALKA 1P49A 1EQJA 2W5TA 5LIAA 4CXUA 2GSOA 3BDHA 2X98A 3E2DA 4UPLA 2XR9A 4KJDA 3UO0A 4CXSA 4UPIA 4GTYA 5DLWA 4FDJA 4LREA 3NKQA 4LRCA 3NKNA 1ED8A 4LRBA 5INHA 4UOOA 3A52A 3BDGB 4FDIA 5AJ9A 5L0EA 2IFYA 2IUCA 4LR2A 5LQQA 3UNYA 4B56A 5IJQA 5K4PA 4CYRA 5LRMA 3TG0A 3SZYA 1ANJA 2D1GA 4MY4A 3WAYA 5DLTA 1Y7AA 1AJCA 1E2SP 1N2KA 1SHNA 4NWXA 5GRRA 2QZUA 4YR1A 1KHJA 2RH6A 1ANIA 3TWZA 1KH7A 1EJJA 1AUKA 4UORA 1O98A 4KJGA 4KM4A 1ZEDA 5C66A 4MIVA 1ALHA 2W8SA 1E33P 3DPCA 2ANHA 3NVLA 3WAVA 3DYCA 1ZEFA 3IGYB 3NKPA 4CYSA 2W5WA 3WBHA 1B8JA 3B5QA 4KAVA 1E3CP 3NKOA 5EGEA 3T00A 1KH5A
chains in the Genus database with same CATH superfamily
2ZKTA 3OT9A 4CXKA 4N7TA 1KH9A 5TJ3A 2W5XA 3CMRA 2W5SA 4ZG9A 3M8YA 3NKRA 1KHKA 2GA3A 2W5RA 4LR9A 3T01A 1URBA 2GSNA 4TN0A 1FSUA 4UPHA 4LRDA 1E1ZP 5L0BA 4LR8A 5L0KA 4ZGAA 3UN2A 1EW8A 3NKMA 4QAXA 3BDFA 3M8ZA 2G9YA 3MK0A 1URAA 3WAXA 3SZZA 3Q3QA 1K7HA 2XRGA 4MHXA 4LQYA 4LR7A 4ZG7A 1KHNA 5KXAA 1AJDA 2GSUA 1ALIA 1EW9A 1HDHA 1ELXA 3LXQA 1ELYA 4GTXA 3WAWA 2IUCB 5HRTA 1EI6A 2W5VA 4GTWA 1ED9A 1N2LA 2GLQA 3M7VA 4LRFA 3BDGA 3IDDA 3TX0A 3UN5A 1ELZA 1ZEBA 3MK2A 4UOPA 2W5QA 3T02A 3UN3A 1HJKA 5IJSA 5DLVA 1SHQA 3KD8A 5GOVA 1KH4A 3M8WA 4NWJA 4UPKA 4GTZA 5EGHA 3IGZB 1ALJA 1HQAA 1AJAA 2VQRA 4ZG6A 1KHLA 1Y6VA 1EW2A 5LRNA 1O99A 3ED4A 4LRAA 2W8DA 1AJBA 4KAYA 3MK1A 1ALKA 1P49A 1EQJA 2W5TA 5LIAA 4CXUA 2GSOA 3BDHA 2X98A 3E2DA 4UPLA 2XR9A 4KJDA 3UO0A 4CXSA 4UPIA 4GTYA 5DLWA 4FDJA 4LREA 3NKQA 4LRCA 3NKNA 1ED8A 4LRBA 5INHA 4UOOA 3A52A 3BDGB 4FDIA 5AJ9A 5L0EA 2IFYA 2IUCA 4LR2A 5LQQA 3UNYA 4B56A 5IJQA 5K4PA 4CYRA 5LRMA 3TG0A 3SZYA 1ANJA 2D1GA 4MY4A 3WAYA 5DLTA 1Y7AA 1AJCA 1E2SP 1N2KA 1SHNA 4NWXA 5GRRA 2QZUA 4YR1A 1KHJA 2RH6A 1ANIA 3TWZA 1KH7A 1EJJA 1AUKA 4UORA 1O98A 4KJGA 4KM4A 1ZEDA 5C66A 4MIVA 1ALHA 2W8SA 1E33P 3DPCA 2ANHA 3NVLA 3WAVA 3DYCA 1ZEFA 3IGYB 3NKPA 4CYSA 2W5WA 3WBHA 1B8JA 3B5QA 4KAVA 1E3CP 3NKOA 5EGEA 3T00A 1KH5A
chains in the Genus database with same CATH topology
2ZKTA 3OT9A 4CXKA 4N7TA 1KH9A 5TJ3A 2W5XA 3CMRA 2W5SA 4ZG9A 3M8YA 3NKRA 1KHKA 2GA3A 2W5RA 4LR9A 3T01A 1URBA 2GSNA 4TN0A 1FSUA 4UPHA 4LRDA 1E1ZP 5L0BA 4LR8A 5L0KA 4ZGAA 3UN2A 1EW8A 3NKMA 4QAXA 3BDFA 3M8ZA 2G9YA 3MK0A 1URAA 3WAXA 3SZZA 3Q3QA 1K7HA 2XRGA 4MHXA 4LQYA 4LR7A 4ZG7A 1KHNA 5KXAA 1AJDA 2GSUA 1ALIA 1EW9A 1HDHA 1ELXA 3LXQA 1ELYA 4GTXA 3WAWA 2IUCB 5HRTA 1EI6A 2W5VA 4GTWA 1ED9A 1N2LA 2GLQA 3M7VA 4LRFA 3BDGA 3IDDA 3TX0A 3UN5A 1ELZA 1ZEBA 3MK2A 4UOPA 2W5QA 3T02A 3UN3A 1HJKA 5IJSA 5DLVA 1SHQA 3KD8A 5GOVA 1KH4A 3M8WA 4NWJA 4UPKA 4GTZA 5EGHA 3IGZB 1ALJA 1HQAA 1AJAA 2VQRA 4ZG6A 1KHLA 1Y6VA 1EW2A 5LRNA 1O99A 3ED4A 4LRAA 2W8DA 1AJBA 4KAYA 3MK1A 1ALKA 1P49A 1EQJA 2W5TA 5LIAA 4CXUA 2GSOA 3BDHA 2X98A 3E2DA 4UPLA 2XR9A 4KJDA 3UO0A 4CXSA 4UPIA 4GTYA 5DLWA 4FDJA 4LREA 3NKQA 4LRCA 3NKNA 1ED8A 4LRBA 5INHA 4UOOA 3A52A 3BDGB 4FDIA 5AJ9A 5L0EA 2IFYA 2IUCA 4LR2A 5LQQA 3UNYA 4B56A 5IJQA 5K4PA 4CYRA 5LRMA 3TG0A 3SZYA 1ANJA 2D1GA 4MY4A 3WAYA 5DLTA 1Y7AA 1AJCA 1E2SP 1N2KA 1SHNA 4NWXA 5GRRA 2QZUA 4YR1A 1KHJA 2RH6A 1ANIA 3TWZA 1KH7A 1EJJA 1AUKA 4UORA 1O98A 4KJGA 4KM4A 1ZEDA 5C66A 4MIVA 1ALHA 2W8SA 1E33P 3DPCA 2ANHA 3NVLA 3WAVA 3DYCA 1ZEFA 3IGYB 3NKPA 4CYSA 2W5WA 3WBHA 1B8JA 3B5QA 4KAVA 1E3CP 3NKOA 5EGEA 3T00A 1KH5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZKT A;  3OT9 A;  4CXK A;  4N7T A;  1KH9 A;  5TJ3 A;  2W5X A;  3CMR A;  2W5S A;  4ZG9 A;  3M8Y A;  3NKR A;  1KHK A;  2GA3 A;  2W5R A;  4LR9 A;  3T01 A;  1URB A;  2GSN A;  4TN0 A;  1FSU A;  4UPH A;  4LRD A;  1E1Z P;  5L0B A;  4LR8 A;  5L0K A;  4ZGA A;  3UN2 A;  1EW8 A;  3NKM A;  4QAX A;  3BDF A;  3M8Z A;  2G9Y A;  3MK0 A;  1URA A;  3WAX A;  3SZZ A;  3Q3Q A;  1K7H A;  2XRG A;  4MHX A;  4LQY A;  4LR7 A;  4ZG7 A;  1KHN A;  5KXA A;  1AJD A;  2GSU A;  1ALI A;  1EW9 A;  1HDH A;  1ELX A;  3LXQ A;  1ELY A;  4GTX A;  3WAW A;  2IUC B;  5HRT A;  1EI6 A;  2W5V A;  4GTW A;  1ED9 A;  1N2L A;  2GLQ A;  3M7V A;  4LRF A;  3BDG A;  3IDD A;  3TX0 A;  3UN5 A;  1ELZ A;  1ZEB A;  3MK2 A;  4UOP A;  2W5Q A;  3T02 A;  3UN3 A;  1HJK A;  5IJS A;  5DLV A;  1SHQ A;  3KD8 A;  5GOV A;  1KH4 A;  3M8W A;  4NWJ A;  4UPK A;  4GTZ A;  5EGH A;  3IGZ B;  1ALJ A;  1HQA A;  1AJA A;  2VQR A;  4ZG6 A;  1KHL A;  1Y6V A;  1EW2 A;  5LRN A;  1O99 A;  3ED4 A;  4LRA A;  2W8D A;  1AJB A;  4KAY A;  3MK1 A;  1ALK A;  1P49 A;  1EQJ A;  2W5T A;  5LIA A;  4CXU A;  2GSO A;  3BDH A;  2X98 A;  3E2D A;  4UPL A;  2XR9 A;  4KJD A;  3UO0 A;  4CXS A;  4UPI A;  4GTY A;  5DLW A;  4FDJ A;  4LRE A;  3NKQ A;  4LRC A;  3NKN A;  1ED8 A;  4LRB A;  5INH A;  4UOO A;  3A52 A;  3BDG B;  4FDI A;  5AJ9 A;  5L0E A;  2IFY A;  2IUC A;  4LR2 A;  5LQQ A;  3UNY A;  4B56 A;  5IJQ A;  5K4P A;  4CYR A;  5LRM A;  3TG0 A;  3SZY A;  1ANJ A;  2D1G A;  4MY4 A;  3WAY A;  5DLT A;  1Y7A A;  1AJC A;  1E2S P;  1N2K A;  1SHN A;  4NWX A;  5GRR A;  2QZU A;  4YR1 A;  1KHJ A;  2RH6 A;  1ANI A;  3TWZ A;  1KH7 A;  1EJJ A;  1AUK A;  4UOR A;  1O98 A;  4KJG A;  4KM4 A;  1ZED A;  5C66 A;  4MIV A;  1ALH A;  2W8S A;  1E33 P;  3DPC A;  2ANH A;  3NVL A;  3WAV A;  3DYC A;  1ZEF A;  3IGY B;  3NKP A;  4CYS A;  2W5W A;  3WBH A;  1B8J A;  3B5Q A;  4KAV A;  1E3C P;  3NKO A;  5EGE A;  3T00 A;  1KH5 A; 
#chains in the Genus database with same CATH topology
 2ZKT A;  3OT9 A;  4CXK A;  4N7T A;  1KH9 A;  5TJ3 A;  2W5X A;  3CMR A;  2W5S A;  4ZG9 A;  3M8Y A;  3NKR A;  1KHK A;  2GA3 A;  2W5R A;  4LR9 A;  3T01 A;  1URB A;  2GSN A;  4TN0 A;  1FSU A;  4UPH A;  4LRD A;  1E1Z P;  5L0B A;  4LR8 A;  5L0K A;  4ZGA A;  3UN2 A;  1EW8 A;  3NKM A;  4QAX A;  3BDF A;  3M8Z A;  2G9Y A;  3MK0 A;  1URA A;  3WAX A;  3SZZ A;  3Q3Q A;  1K7H A;  2XRG A;  4MHX A;  4LQY A;  4LR7 A;  4ZG7 A;  1KHN A;  5KXA A;  1AJD A;  2GSU A;  1ALI A;  1EW9 A;  1HDH A;  1ELX A;  3LXQ A;  1ELY A;  4GTX A;  3WAW A;  2IUC B;  5HRT A;  1EI6 A;  2W5V A;  4GTW A;  1ED9 A;  1N2L A;  2GLQ A;  3M7V A;  4LRF A;  3BDG A;  3IDD A;  3TX0 A;  3UN5 A;  1ELZ A;  1ZEB A;  3MK2 A;  4UOP A;  2W5Q A;  3T02 A;  3UN3 A;  1HJK A;  5IJS A;  5DLV A;  1SHQ A;  3KD8 A;  5GOV A;  1KH4 A;  3M8W A;  4NWJ A;  4UPK A;  4GTZ A;  5EGH A;  3IGZ B;  1ALJ A;  1HQA A;  1AJA A;  2VQR A;  4ZG6 A;  1KHL A;  1Y6V A;  1EW2 A;  5LRN A;  1O99 A;  3ED4 A;  4LRA A;  2W8D A;  1AJB A;  4KAY A;  3MK1 A;  1ALK A;  1P49 A;  1EQJ A;  2W5T A;  5LIA A;  4CXU A;  2GSO A;  3BDH A;  2X98 A;  3E2D A;  4UPL A;  2XR9 A;  4KJD A;  3UO0 A;  4CXS A;  4UPI A;  4GTY A;  5DLW A;  4FDJ A;  4LRE A;  3NKQ A;  4LRC A;  3NKN A;  1ED8 A;  4LRB A;  5INH A;  4UOO A;  3A52 A;  3BDG B;  4FDI A;  5AJ9 A;  5L0E A;  2IFY A;  2IUC A;  4LR2 A;  5LQQ A;  3UNY A;  4B56 A;  5IJQ A;  5K4P A;  4CYR A;  5LRM A;  3TG0 A;  3SZY A;  1ANJ A;  2D1G A;  4MY4 A;  3WAY A;  5DLT A;  1Y7A A;  1AJC A;  1E2S P;  1N2K A;  1SHN A;  4NWX A;  5GRR A;  2QZU A;  4YR1 A;  1KHJ A;  2RH6 A;  1ANI A;  3TWZ A;  1KH7 A;  1EJJ A;  1AUK A;  4UOR A;  1O98 A;  4KJG A;  4KM4 A;  1ZED A;  5C66 A;  4MIV A;  1ALH A;  2W8S A;  1E33 P;  3DPC A;  2ANH A;  3NVL A;  3WAV A;  3DYC A;  1ZEF A;  3IGY B;  3NKP A;  4CYS A;  2W5W A;  3WBH A;  1B8J A;  3B5Q A;  4KAV A;  1E3C P;  3NKO A;  5EGE A;  3T00 A;  1KH5 A; 
#chains in the Genus database with same CATH homology
 2ZKT A;  3OT9 A;  4CXK A;  4N7T A;  1KH9 A;  5TJ3 A;  2W5X A;  3CMR A;  2W5S A;  4ZG9 A;  3M8Y A;  3NKR A;  1KHK A;  2GA3 A;  2W5R A;  4LR9 A;  3T01 A;  1URB A;  2GSN A;  4TN0 A;  1FSU A;  4UPH A;  4LRD A;  1E1Z P;  5L0B A;  4LR8 A;  5L0K A;  4ZGA A;  3UN2 A;  1EW8 A;  3NKM A;  4QAX A;  3BDF A;  3M8Z A;  2G9Y A;  3MK0 A;  1URA A;  3WAX A;  3SZZ A;  3Q3Q A;  1K7H A;  2XRG A;  4MHX A;  4LQY A;  4LR7 A;  4ZG7 A;  1KHN A;  5KXA A;  1AJD A;  2GSU A;  1ALI A;  1EW9 A;  1HDH A;  1ELX A;  3LXQ A;  1ELY A;  4GTX A;  3WAW A;  2IUC B;  5HRT A;  1EI6 A;  2W5V A;  4GTW A;  1ED9 A;  1N2L A;  2GLQ A;  3M7V A;  4LRF A;  3BDG A;  3IDD A;  3TX0 A;  3UN5 A;  1ELZ A;  1ZEB A;  3MK2 A;  4UOP A;  2W5Q A;  3T02 A;  3UN3 A;  1HJK A;  5IJS A;  5DLV A;  1SHQ A;  3KD8 A;  5GOV A;  1KH4 A;  3M8W A;  4NWJ A;  4UPK A;  4GTZ A;  5EGH A;  3IGZ B;  1ALJ A;  1HQA A;  1AJA A;  2VQR A;  4ZG6 A;  1KHL A;  1Y6V A;  1EW2 A;  5LRN A;  1O99 A;  3ED4 A;  4LRA A;  2W8D A;  1AJB A;  4KAY A;  3MK1 A;  1ALK A;  1P49 A;  1EQJ A;  2W5T A;  5LIA A;  4CXU A;  2GSO A;  3BDH A;  2X98 A;  3E2D A;  4UPL A;  2XR9 A;  4KJD A;  3UO0 A;  4CXS A;  4UPI A;  4GTY A;  5DLW A;  4FDJ A;  4LRE A;  3NKQ A;  4LRC A;  3NKN A;  1ED8 A;  4LRB A;  5INH A;  4UOO A;  3A52 A;  3BDG B;  4FDI A;  5AJ9 A;  5L0E A;  2IFY A;  2IUC A;  4LR2 A;  5LQQ A;  3UNY A;  4B56 A;  5IJQ A;  5K4P A;  4CYR A;  5LRM A;  3TG0 A;  3SZY A;  1ANJ A;  2D1G A;  4MY4 A;  3WAY A;  5DLT A;  1Y7A A;  1AJC A;  1E2S P;  1N2K A;  1SHN A;  4NWX A;  5GRR A;  2QZU A;  4YR1 A;  1KHJ A;  2RH6 A;  1ANI A;  3TWZ A;  1KH7 A;  1EJJ A;  1AUK A;  4UOR A;  1O98 A;  4KJG A;  4KM4 A;  1ZED A;  5C66 A;  4MIV A;  1ALH A;  2W8S A;  1E33 P;  3DPC A;  2ANH A;  3NVL A;  3WAV A;  3DYC A;  1ZEF A;  3IGY B;  3NKP A;  4CYS A;  2W5W A;  3WBH A;  1B8J A;  3B5Q A;  4KAV A;  1E3C P;  3NKO A;  5EGE A;  3T00 A;  1KH5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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