1KH5A

E. coli alkaline phosphatase mutant (d330n) mimic of the transition states with aluminium fluoride
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
Knots found
sequence length
444
structure length
444
Chain Sequence
VLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQNHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords ALKALINE PHOSPHATASE
publication title Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
source organism Escherichia coli
total genus 151
structure length 444
sequence length 444
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1kh5A00
1FSUA 1ALKA 5INHA 1E1ZP 4KJDA 1EW2A 1HJKA 3NVLA 3IDDA 1HDHA 3IGYB 3NKOA 3SZYA 1E33P 3BDGB 4KJGA 1KHJA 2W5QA 4UPKA 3M7VA 1AUKA 4UOOA 1K7HA 1URBA 3NKNA 4UPIA 1HQAA 3WAYA 2G9YA 5LRNA 3TG0A 2X98A 1ED8A 3BDGA 1B8JA 3TX0A 1EI6A 2W5VA 3UN5A 2RH6A 3UO0A 3UNYA 2W8DA 5LRMA 1KHLA 3LXQA 2GSOA 4N7TA 1EW8A 2IFYA 3IGZB 1Y7AA 1SHNA 3UN2A 1AJBA 3WBHA 1AJDA 1KH5A 2XRGA 5L0EA 1EW9A 1Y6VA 3KD8A 1P49A 4CYRA 3NKQA 4LR9A 3ED4A 2IUCB 2W5WA 3NKRA 1ED9A 2VQRA 1KH4A 1ZEDA 1AJAA 2W5TA 1ALIA 4NWJA 2ZKTA 5TJ3A 4ZG6A 5C66A 4UPHA 4LRAA 5LQQA 4CXSA 4B56A 2IUCA 5IJQA 1ZEFA 4GTYA 2W5SA 1O99A 1EJJA 5DLWA 1ELXA 4LREA 1ANJA 3WAVA 1KHNA 3BDHA 3M8ZA 4MIVA 4CYSA 4MY4A 5EGHA 4LRCA 4LR2A 3MK0A 3NKMA 2GSUA 5DLTA 3MK2A 4LR7A 3T01A 1ELZA 4CXKA 4KM4A 5KXAA 5L0BA 4ZG9A 2GLQA 1SHQA 3WAWA 1ELYA 2XR9A 2W8SA 3M8YA 1O98A 4CXUA 4LRFA 3WAXA 4TN0A 3OT9A 4UOPA 2QZUA 5HRTA 4FDJA 2W5XA 4NWXA 1E3CP 2GA3A 3DPCA 3UN3A 5AJ9A 1N2LA 2W5RA 3BDFA 3B5QA 4GTZA 3T00A 3T02A 4LR8A 4UPLA 3E2DA 4LRBA 1ALJA 1ALHA 4ZGAA 5IJSA 4ZG7A 4MHXA 4UORA 1ANIA 5LIAA 4QAXA 4LQYA 1KH7A 4LRDA 3A52A 5DLVA 2GSNA 3DYCA 3MK1A 1AJCA 3M8WA 4GTWA 1N2KA 4FDIA 3NKPA 5K4PA 3CMRA 1URAA 2D1GA 5EGEA 2ANHA 4KAYA 5L0KA 5GRRA 4YR1A 3SZZA 1KH9A 1KHKA 5GOVA 3TWZA 4KAVA 1E2SP 1EQJA 4GTXA 3Q3QA 1ZEBA
chains in the Genus database with same CATH superfamily
1FSUA 1ALKA 5INHA 1E1ZP 4KJDA 1EW2A 1HJKA 3NVLA 3IDDA 1HDHA 3IGYB 3NKOA 3SZYA 1E33P 3BDGB 4KJGA 1KHJA 2W5QA 4UPKA 3M7VA 1AUKA 4UOOA 1K7HA 1URBA 3NKNA 4UPIA 1HQAA 3WAYA 2G9YA 5LRNA 3TG0A 2X98A 1ED8A 3BDGA 1B8JA 3TX0A 1EI6A 2W5VA 3UN5A 2RH6A 3UO0A 3UNYA 2W8DA 5LRMA 1KHLA 3LXQA 2GSOA 4N7TA 1EW8A 2IFYA 3IGZB 1Y7AA 1SHNA 3UN2A 1AJBA 3WBHA 1AJDA 1KH5A 2XRGA 5L0EA 1EW9A 1Y6VA 3KD8A 1P49A 4CYRA 3NKQA 4LR9A 3ED4A 2IUCB 2W5WA 3NKRA 1ED9A 2VQRA 1KH4A 1ZEDA 1AJAA 2W5TA 1ALIA 4NWJA 2ZKTA 5TJ3A 4ZG6A 5C66A 4UPHA 4LRAA 5LQQA 4CXSA 4B56A 2IUCA 5IJQA 1ZEFA 4GTYA 2W5SA 1O99A 1EJJA 5DLWA 1ELXA 4LREA 1ANJA 3WAVA 1KHNA 3BDHA 3M8ZA 4MIVA 4CYSA 4MY4A 5EGHA 4LRCA 4LR2A 3MK0A 3NKMA 2GSUA 5DLTA 3MK2A 4LR7A 3T01A 1ELZA 4CXKA 4KM4A 5KXAA 5L0BA 4ZG9A 2GLQA 1SHQA 3WAWA 1ELYA 2XR9A 2W8SA 3M8YA 1O98A 4CXUA 4LRFA 3WAXA 4TN0A 3OT9A 4UOPA 2QZUA 5HRTA 4FDJA 2W5XA 4NWXA 1E3CP 2GA3A 3DPCA 3UN3A 5AJ9A 1N2LA 2W5RA 3BDFA 3B5QA 4GTZA 3T00A 3T02A 4LR8A 4UPLA 3E2DA 4LRBA 1ALJA 1ALHA 4ZGAA 5IJSA 4ZG7A 4MHXA 4UORA 1ANIA 5LIAA 4QAXA 4LQYA 1KH7A 4LRDA 3A52A 5DLVA 2GSNA 3DYCA 3MK1A 1AJCA 3M8WA 4GTWA 1N2KA 4FDIA 3NKPA 5K4PA 3CMRA 1URAA 2D1GA 5EGEA 2ANHA 4KAYA 5L0KA 5GRRA 4YR1A 3SZZA 1KH9A 1KHKA 5GOVA 3TWZA 4KAVA 1E2SP 1EQJA 4GTXA 3Q3QA 1ZEBA
chains in the Genus database with same CATH topology
1FSUA 1ALKA 5INHA 1E1ZP 4KJDA 1EW2A 1HJKA 3NVLA 3IDDA 1HDHA 3IGYB 3NKOA 3SZYA 1E33P 3BDGB 4KJGA 1KHJA 2W5QA 4UPKA 3M7VA 1AUKA 4UOOA 1K7HA 1URBA 3NKNA 4UPIA 1HQAA 3WAYA 2G9YA 5LRNA 3TG0A 2X98A 1ED8A 3BDGA 1B8JA 3TX0A 1EI6A 2W5VA 3UN5A 2RH6A 3UO0A 3UNYA 2W8DA 5LRMA 1KHLA 3LXQA 2GSOA 4N7TA 1EW8A 2IFYA 3IGZB 1Y7AA 1SHNA 3UN2A 1AJBA 3WBHA 1AJDA 1KH5A 2XRGA 5L0EA 1EW9A 1Y6VA 3KD8A 1P49A 4CYRA 3NKQA 4LR9A 3ED4A 2IUCB 2W5WA 3NKRA 1ED9A 2VQRA 1KH4A 1ZEDA 1AJAA 2W5TA 1ALIA 4NWJA 2ZKTA 5TJ3A 4ZG6A 5C66A 4UPHA 4LRAA 5LQQA 4CXSA 4B56A 2IUCA 5IJQA 1ZEFA 4GTYA 2W5SA 1O99A 1EJJA 5DLWA 1ELXA 4LREA 1ANJA 3WAVA 1KHNA 3BDHA 3M8ZA 4MIVA 4CYSA 4MY4A 5EGHA 4LRCA 4LR2A 3MK0A 3NKMA 2GSUA 5DLTA 3MK2A 4LR7A 3T01A 1ELZA 4CXKA 4KM4A 5KXAA 5L0BA 4ZG9A 2GLQA 1SHQA 3WAWA 1ELYA 2XR9A 2W8SA 3M8YA 1O98A 4CXUA 4LRFA 3WAXA 4TN0A 3OT9A 4UOPA 2QZUA 5HRTA 4FDJA 2W5XA 4NWXA 1E3CP 2GA3A 3DPCA 3UN3A 5AJ9A 1N2LA 2W5RA 3BDFA 3B5QA 4GTZA 3T00A 3T02A 4LR8A 4UPLA 3E2DA 4LRBA 1ALJA 1ALHA 4ZGAA 5IJSA 4ZG7A 4MHXA 4UORA 1ANIA 5LIAA 4QAXA 4LQYA 1KH7A 4LRDA 3A52A 5DLVA 2GSNA 3DYCA 3MK1A 1AJCA 3M8WA 4GTWA 1N2KA 4FDIA 3NKPA 5K4PA 3CMRA 1URAA 2D1GA 5EGEA 2ANHA 4KAYA 5L0KA 5GRRA 4YR1A 3SZZA 1KH9A 1KHKA 5GOVA 3TWZA 4KAVA 1E2SP 1EQJA 4GTXA 3Q3QA 1ZEBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FSU A;  1ALK A;  5INH A;  1E1Z P;  4KJD A;  1EW2 A;  1HJK A;  3NVL A;  3IDD A;  1HDH A;  3IGY B;  3NKO A;  3SZY A;  1E33 P;  3BDG B;  4KJG A;  1KHJ A;  2W5Q A;  4UPK A;  3M7V A;  1AUK A;  4UOO A;  1K7H A;  1URB A;  3NKN A;  4UPI A;  1HQA A;  3WAY A;  2G9Y A;  5LRN A;  3TG0 A;  2X98 A;  1ED8 A;  3BDG A;  1B8J A;  3TX0 A;  1EI6 A;  2W5V A;  3UN5 A;  2RH6 A;  3UO0 A;  3UNY A;  2W8D A;  5LRM A;  1KHL A;  3LXQ A;  2GSO A;  4N7T A;  1EW8 A;  2IFY A;  3IGZ B;  1Y7A A;  1SHN A;  3UN2 A;  1AJB A;  3WBH A;  1AJD A;  1KH5 A;  2XRG A;  5L0E A;  1EW9 A;  1Y6V A;  3KD8 A;  1P49 A;  4CYR A;  3NKQ A;  4LR9 A;  3ED4 A;  2IUC B;  2W5W A;  3NKR A;  1ED9 A;  2VQR A;  1KH4 A;  1ZED A;  1AJA A;  2W5T A;  1ALI A;  4NWJ A;  2ZKT A;  5TJ3 A;  4ZG6 A;  5C66 A;  4UPH A;  4LRA A;  5LQQ A;  4CXS A;  4B56 A;  2IUC A;  5IJQ A;  1ZEF A;  4GTY A;  2W5S A;  1O99 A;  1EJJ A;  5DLW A;  1ELX A;  4LRE A;  1ANJ A;  3WAV A;  1KHN A;  3BDH A;  3M8Z A;  4MIV A;  4CYS A;  4MY4 A;  5EGH A;  4LRC A;  4LR2 A;  3MK0 A;  3NKM A;  2GSU A;  5DLT A;  3MK2 A;  4LR7 A;  3T01 A;  1ELZ A;  4CXK A;  4KM4 A;  5KXA A;  5L0B A;  4ZG9 A;  2GLQ A;  1SHQ A;  3WAW A;  1ELY A;  2XR9 A;  2W8S A;  3M8Y A;  1O98 A;  4CXU A;  4LRF A;  3WAX A;  4TN0 A;  3OT9 A;  4UOP A;  2QZU A;  5HRT A;  4FDJ A;  2W5X A;  4NWX A;  1E3C P;  2GA3 A;  3DPC A;  3UN3 A;  5AJ9 A;  1N2L A;  2W5R A;  3BDF A;  3B5Q A;  4GTZ A;  3T00 A;  3T02 A;  4LR8 A;  4UPL A;  3E2D A;  4LRB A;  1ALJ A;  1ALH A;  4ZGA A;  5IJS A;  4ZG7 A;  4MHX A;  4UOR A;  1ANI A;  5LIA A;  4QAX A;  4LQY A;  1KH7 A;  4LRD A;  3A52 A;  5DLV A;  2GSN A;  3DYC A;  3MK1 A;  1AJC A;  3M8W A;  4GTW A;  1N2K A;  4FDI A;  3NKP A;  5K4P A;  3CMR A;  1URA A;  2D1G A;  5EGE A;  2ANH A;  4KAY A;  5L0K A;  5GRR A;  4YR1 A;  3SZZ A;  1KH9 A;  1KHK A;  5GOV A;  3TWZ A;  4KAV A;  1E2S P;  1EQJ A;  4GTX A;  3Q3Q A;  1ZEB A; 
#chains in the Genus database with same CATH topology
 1FSU A;  1ALK A;  5INH A;  1E1Z P;  4KJD A;  1EW2 A;  1HJK A;  3NVL A;  3IDD A;  1HDH A;  3IGY B;  3NKO A;  3SZY A;  1E33 P;  3BDG B;  4KJG A;  1KHJ A;  2W5Q A;  4UPK A;  3M7V A;  1AUK A;  4UOO A;  1K7H A;  1URB A;  3NKN A;  4UPI A;  1HQA A;  3WAY A;  2G9Y A;  5LRN A;  3TG0 A;  2X98 A;  1ED8 A;  3BDG A;  1B8J A;  3TX0 A;  1EI6 A;  2W5V A;  3UN5 A;  2RH6 A;  3UO0 A;  3UNY A;  2W8D A;  5LRM A;  1KHL A;  3LXQ A;  2GSO A;  4N7T A;  1EW8 A;  2IFY A;  3IGZ B;  1Y7A A;  1SHN A;  3UN2 A;  1AJB A;  3WBH A;  1AJD A;  1KH5 A;  2XRG A;  5L0E A;  1EW9 A;  1Y6V A;  3KD8 A;  1P49 A;  4CYR A;  3NKQ A;  4LR9 A;  3ED4 A;  2IUC B;  2W5W A;  3NKR A;  1ED9 A;  2VQR A;  1KH4 A;  1ZED A;  1AJA A;  2W5T A;  1ALI A;  4NWJ A;  2ZKT A;  5TJ3 A;  4ZG6 A;  5C66 A;  4UPH A;  4LRA A;  5LQQ A;  4CXS A;  4B56 A;  2IUC A;  5IJQ A;  1ZEF A;  4GTY A;  2W5S A;  1O99 A;  1EJJ A;  5DLW A;  1ELX A;  4LRE A;  1ANJ A;  3WAV A;  1KHN A;  3BDH A;  3M8Z A;  4MIV A;  4CYS A;  4MY4 A;  5EGH A;  4LRC A;  4LR2 A;  3MK0 A;  3NKM A;  2GSU A;  5DLT A;  3MK2 A;  4LR7 A;  3T01 A;  1ELZ A;  4CXK A;  4KM4 A;  5KXA A;  5L0B A;  4ZG9 A;  2GLQ A;  1SHQ A;  3WAW A;  1ELY A;  2XR9 A;  2W8S A;  3M8Y A;  1O98 A;  4CXU A;  4LRF A;  3WAX A;  4TN0 A;  3OT9 A;  4UOP A;  2QZU A;  5HRT A;  4FDJ A;  2W5X A;  4NWX A;  1E3C P;  2GA3 A;  3DPC A;  3UN3 A;  5AJ9 A;  1N2L A;  2W5R A;  3BDF A;  3B5Q A;  4GTZ A;  3T00 A;  3T02 A;  4LR8 A;  4UPL A;  3E2D A;  4LRB A;  1ALJ A;  1ALH A;  4ZGA A;  5IJS A;  4ZG7 A;  4MHX A;  4UOR A;  1ANI A;  5LIA A;  4QAX A;  4LQY A;  1KH7 A;  4LRD A;  3A52 A;  5DLV A;  2GSN A;  3DYC A;  3MK1 A;  1AJC A;  3M8W A;  4GTW A;  1N2K A;  4FDI A;  3NKP A;  5K4P A;  3CMR A;  1URA A;  2D1G A;  5EGE A;  2ANH A;  4KAY A;  5L0K A;  5GRR A;  4YR1 A;  3SZZ A;  1KH9 A;  1KHK A;  5GOV A;  3TWZ A;  4KAV A;  1E2S P;  1EQJ A;  4GTX A;  3Q3Q A;  1ZEB A; 
#chains in the Genus database with same CATH homology
 1FSU A;  1ALK A;  5INH A;  1E1Z P;  4KJD A;  1EW2 A;  1HJK A;  3NVL A;  3IDD A;  1HDH A;  3IGY B;  3NKO A;  3SZY A;  1E33 P;  3BDG B;  4KJG A;  1KHJ A;  2W5Q A;  4UPK A;  3M7V A;  1AUK A;  4UOO A;  1K7H A;  1URB A;  3NKN A;  4UPI A;  1HQA A;  3WAY A;  2G9Y A;  5LRN A;  3TG0 A;  2X98 A;  1ED8 A;  3BDG A;  1B8J A;  3TX0 A;  1EI6 A;  2W5V A;  3UN5 A;  2RH6 A;  3UO0 A;  3UNY A;  2W8D A;  5LRM A;  1KHL A;  3LXQ A;  2GSO A;  4N7T A;  1EW8 A;  2IFY A;  3IGZ B;  1Y7A A;  1SHN A;  3UN2 A;  1AJB A;  3WBH A;  1AJD A;  1KH5 A;  2XRG A;  5L0E A;  1EW9 A;  1Y6V A;  3KD8 A;  1P49 A;  4CYR A;  3NKQ A;  4LR9 A;  3ED4 A;  2IUC B;  2W5W A;  3NKR A;  1ED9 A;  2VQR A;  1KH4 A;  1ZED A;  1AJA A;  2W5T A;  1ALI A;  4NWJ A;  2ZKT A;  5TJ3 A;  4ZG6 A;  5C66 A;  4UPH A;  4LRA A;  5LQQ A;  4CXS A;  4B56 A;  2IUC A;  5IJQ A;  1ZEF A;  4GTY A;  2W5S A;  1O99 A;  1EJJ A;  5DLW A;  1ELX A;  4LRE A;  1ANJ A;  3WAV A;  1KHN A;  3BDH A;  3M8Z A;  4MIV A;  4CYS A;  4MY4 A;  5EGH A;  4LRC A;  4LR2 A;  3MK0 A;  3NKM A;  2GSU A;  5DLT A;  3MK2 A;  4LR7 A;  3T01 A;  1ELZ A;  4CXK A;  4KM4 A;  5KXA A;  5L0B A;  4ZG9 A;  2GLQ A;  1SHQ A;  3WAW A;  1ELY A;  2XR9 A;  2W8S A;  3M8Y A;  1O98 A;  4CXU A;  4LRF A;  3WAX A;  4TN0 A;  3OT9 A;  4UOP A;  2QZU A;  5HRT A;  4FDJ A;  2W5X A;  4NWX A;  1E3C P;  2GA3 A;  3DPC A;  3UN3 A;  5AJ9 A;  1N2L A;  2W5R A;  3BDF A;  3B5Q A;  4GTZ A;  3T00 A;  3T02 A;  4LR8 A;  4UPL A;  3E2D A;  4LRB A;  1ALJ A;  1ALH A;  4ZGA A;  5IJS A;  4ZG7 A;  4MHX A;  4UOR A;  1ANI A;  5LIA A;  4QAX A;  4LQY A;  1KH7 A;  4LRD A;  3A52 A;  5DLV A;  2GSN A;  3DYC A;  3MK1 A;  1AJC A;  3M8W A;  4GTW A;  1N2K A;  4FDI A;  3NKP A;  5K4P A;  3CMR A;  1URA A;  2D1G A;  5EGE A;  2ANH A;  4KAY A;  5L0K A;  5GRR A;  4YR1 A;  3SZZ A;  1KH9 A;  1KHK A;  5GOV A;  3TWZ A;  4KAV A;  1E2S P;  1EQJ A;  4GTX A;  3Q3Q A;  1ZEB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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