2IFYA

Structure of bacillus anthracis cofactor-independent phosphoglucerate mutase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
Knots found
sequence length
508
structure length
508
Chain Sequence
RKPTALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHTTLTACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKETGVGQFATISGRYYSMDRDKRWDRVEKCYRAMVNGEGPTYKSAEECVEDSYANGIYDEFVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNGDFREFDRGEKVPHIPEFVCMTHFSETVDGYVAFKPMNLDNTLGEVVAQAGLKQLRIAETEKYPHVTFFFSGGREAEFPGEERILINSPKVATYDLKPEMSIYEVTDALVNEIENDKHDVIILNFANCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADEELTSEGEPMTAHTTNPVPFIVTKNDVELREDGILGDIAPTMLTLLGVEQPKEMTGKTIIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Structure and Molecular Mechanism of Bacillus anthracis Cofactor-Independent Phosphoglycerate Mutase: A Crucial Enzyme for Spores and Growing Cells of Bacillus Species.
pubmed doi rcsb
source organism Bacillus anthracis
molecule tags Isomerase
total genus 156
structure length 508
sequence length 508
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2006-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2ifyA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 2ifyA02
3BDFA 5DLWA 2ANHA 2VQRA 1AJAA 3UO0A 4KJGA 5KXAA 2QZUA 4UPLA 1EW8A 2W5RA 2W5VA 5AJ9A 1FSUA 4LRAA 1ANIA 3NKPA 5L0KA 4LREA 1ELYA 3NKNA 2ZKTA 4MY4A 1KH4A 3NKOA 3M8WA 1E1ZP 1KHLA 2GSUA 3TWZA 3CMRA 3WAVA 1N2LA 3LXQA 1EW9A 2GA3A 1KHKA 3MK1A 1URBA 1HDHA 3NKQA 1URAA 2D1GA 1SHNA 4UOOA 3ED4A 2W5WA 4LRBA 5IJQA 4CYRA 3M7VA 1N2KA 4LR8A 4LRFA 1EQJA 5LIAA 1EJJA 3WAWA 5DLVA 4UORA 5DLTA 1AJCA 1ZEBA 4GTXA 4ZG6A 1O98A 5LRNA 4KJDA 5L0EA 3WAYA 3M8YA 2W5QA 1EI6A 1Y7AA 2W8SA 4UPIA 1ALKA 4N7TA 5INHA 3T01A 4CYSA 2IFYA 1AJBA 3TX0A 5IJSA 3UN3A 5EGEA 3SZYA 1AUKA 1B8JA 2IUCB 1Y6VA 3M8ZA 4CXKA 5LQQA 1ZEFA 3DPCA 1HQAA 4GTWA 3UN5A 3E2DA 4MHXA 1KH9A 3BDGB 4TN0A 1KHNA 3DYCA 5K4PA 3TG0A 1ELXA 1O99A 3WBHA 4KAVA 2RH6A 4UPKA 3WAXA 1ZEDA 3UN2A 3NKMA 4CXUA 4YR1A 1ALHA 4GTZA 5L0BA 4QAXA 4LRDA 1HJKA 2IUCA 5EGHA 3T02A 4CXSA 1ANJA 1SHQA 3Q3QA 4LQYA 5HRTA 1KH5A 4LR7A 1ALJA 3B5QA 2W8DA 3IDDA 2XR9A 5LRMA 2X98A 3BDGA 3MK2A 4LR2A 1P49A 4FDJA 4FDIA 5GOVA 4ZG9A 3KD8A 3MK0A 4MIVA 4NWXA 4UPHA 3UNYA 1KHJA 2GLQA 2G9YA 1E2SP 1KH7A 5GRRA 4KM4A 1ELZA 1K7HA 3IGYB 5C66A 3T00A 3A52A 2GSNA 1E3CP 1E33P 4KAYA 4ZGAA 2W5SA 2W5TA 3BDHA 2XRGA 4LRCA 2W5XA 1ED9A 3NKRA 1AJDA 3OT9A 3NVLA 3SZZA 4NWJA 5TJ3A 4LR9A 4ZG7A 1ALIA 3IGZB 4B56A 2GSOA 1EW2A 1ED8A 4GTYA 4UOPA
chains in the Genus database with same CATH superfamily
3BDFA 5DLWA 2ANHA 2VQRA 1AJAA 3UO0A 4KJGA 5KXAA 2QZUA 4UPLA 1EW8A 2W5RA 2W5VA 5AJ9A 1FSUA 4LRAA 1ANIA 3NKPA 5L0KA 4LREA 1ELYA 3NKNA 2ZKTA 4MY4A 1KH4A 3NKOA 3M8WA 1E1ZP 1KHLA 2GSUA 3TWZA 3CMRA 3WAVA 1N2LA 3LXQA 1EW9A 2GA3A 1KHKA 3MK1A 1URBA 1HDHA 3NKQA 1URAA 2D1GA 1SHNA 4UOOA 3ED4A 2W5WA 4LRBA 5IJQA 4CYRA 3M7VA 1N2KA 4LR8A 4LRFA 1EQJA 5LIAA 1EJJA 3WAWA 5DLVA 4UORA 5DLTA 1AJCA 1ZEBA 4GTXA 4ZG6A 1O98A 5LRNA 4KJDA 5L0EA 3WAYA 3M8YA 2W5QA 1EI6A 1Y7AA 2W8SA 4UPIA 1ALKA 4N7TA 5INHA 3T01A 4CYSA 2IFYA 1AJBA 3TX0A 5IJSA 3UN3A 5EGEA 3SZYA 1AUKA 1B8JA 2IUCB 1Y6VA 3M8ZA 4CXKA 5LQQA 1ZEFA 3DPCA 1HQAA 4GTWA 3UN5A 3E2DA 4MHXA 1KH9A 3BDGB 4TN0A 1KHNA 3DYCA 5K4PA 3TG0A 1ELXA 1O99A 3WBHA 4KAVA 2RH6A 4UPKA 3WAXA 1ZEDA 3UN2A 3NKMA 4CXUA 4YR1A 1ALHA 4GTZA 5L0BA 4QAXA 4LRDA 1HJKA 2IUCA 5EGHA 3T02A 4CXSA 1ANJA 1SHQA 3Q3QA 4LQYA 5HRTA 1KH5A 4LR7A 1ALJA 3B5QA 2W8DA 3IDDA 2XR9A 5LRMA 2X98A 3BDGA 3MK2A 4LR2A 1P49A 4FDJA 4FDIA 5GOVA 4ZG9A 3KD8A 3MK0A 4MIVA 4NWXA 4UPHA 3UNYA 1KHJA 2GLQA 2G9YA 1E2SP 1KH7A 5GRRA 4KM4A 1ELZA 1K7HA 3IGYB 5C66A 3T00A 3A52A 2GSNA 1E3CP 1E33P 4KAYA 4ZGAA 2W5SA 2W5TA 3BDHA 2XRGA 4LRCA 2W5XA 1ED9A 3NKRA 1AJDA 3OT9A 3NVLA 3SZZA 4NWJA 5TJ3A 4LR9A 4ZG7A 1ALIA 3IGZB 4B56A 2GSOA 1EW2A 1ED8A 4GTYA 4UOPA
chains in the Genus database with same CATH topology
3BDFA 5DLWA 2ANHA 2VQRA 1AJAA 3UO0A 4KJGA 5KXAA 2QZUA 4UPLA 1EW8A 2W5RA 2W5VA 5AJ9A 1FSUA 4LRAA 1ANIA 3NKPA 5L0KA 4LREA 1ELYA 3NKNA 2ZKTA 4MY4A 1KH4A 3NKOA 3M8WA 1E1ZP 1KHLA 2GSUA 3TWZA 3CMRA 3WAVA 1N2LA 3LXQA 1EW9A 2GA3A 1KHKA 3MK1A 1URBA 1HDHA 3NKQA 1URAA 2D1GA 1SHNA 4UOOA 3ED4A 2W5WA 4LRBA 5IJQA 4CYRA 3M7VA 1N2KA 4LR8A 4LRFA 1EQJA 5LIAA 1EJJA 3WAWA 5DLVA 4UORA 5DLTA 1AJCA 1ZEBA 4GTXA 4ZG6A 1O98A 5LRNA 4KJDA 5L0EA 3WAYA 3M8YA 2W5QA 1EI6A 1Y7AA 2W8SA 4UPIA 1ALKA 4N7TA 5INHA 3T01A 4CYSA 2IFYA 1AJBA 3TX0A 5IJSA 3UN3A 5EGEA 3SZYA 1AUKA 1B8JA 2IUCB 1Y6VA 3M8ZA 4CXKA 5LQQA 1ZEFA 3DPCA 1HQAA 4GTWA 3UN5A 3E2DA 4MHXA 1KH9A 3BDGB 4TN0A 1KHNA 3DYCA 5K4PA 3TG0A 1ELXA 1O99A 3WBHA 4KAVA 2RH6A 4UPKA 3WAXA 1ZEDA 3UN2A 3NKMA 4CXUA 4YR1A 1ALHA 4GTZA 5L0BA 4QAXA 4LRDA 1HJKA 2IUCA 5EGHA 3T02A 4CXSA 1ANJA 1SHQA 3Q3QA 4LQYA 5HRTA 1KH5A 4LR7A 1ALJA 3B5QA 2W8DA 3IDDA 2XR9A 5LRMA 2X98A 3BDGA 3MK2A 4LR2A 1P49A 4FDJA 4FDIA 5GOVA 4ZG9A 3KD8A 3MK0A 4MIVA 4NWXA 4UPHA 3UNYA 1KHJA 2GLQA 2G9YA 1E2SP 1KH7A 5GRRA 4KM4A 1ELZA 1K7HA 3IGYB 5C66A 3T00A 3A52A 2GSNA 1E3CP 1E33P 4KAYA 4ZGAA 2W5SA 2W5TA 3BDHA 2XRGA 4LRCA 2W5XA 1ED9A 3NKRA 1AJDA 3OT9A 3NVLA 3SZZA 4NWJA 5TJ3A 4LR9A 4ZG7A 1ALIA 3IGZB 4B56A 2GSOA 1EW2A 1ED8A 4GTYA 4UOPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BDF A;  5DLW A;  2ANH A;  2VQR A;  1AJA A;  3UO0 A;  4KJG A;  5KXA A;  2QZU A;  4UPL A;  1EW8 A;  2W5R A;  2W5V A;  5AJ9 A;  1FSU A;  4LRA A;  1ANI A;  3NKP A;  5L0K A;  4LRE A;  1ELY A;  3NKN A;  2ZKT A;  4MY4 A;  1KH4 A;  3NKO A;  3M8W A;  1E1Z P;  1KHL A;  2GSU A;  3TWZ A;  3CMR A;  3WAV A;  1N2L A;  3LXQ A;  1EW9 A;  2GA3 A;  1KHK A;  3MK1 A;  1URB A;  1HDH A;  3NKQ A;  1URA A;  2D1G A;  1SHN A;  4UOO A;  3ED4 A;  2W5W A;  4LRB A;  5IJQ A;  4CYR A;  3M7V A;  1N2K A;  4LR8 A;  4LRF A;  1EQJ A;  5LIA A;  1EJJ A;  3WAW A;  5DLV A;  4UOR A;  5DLT A;  1AJC A;  1ZEB A;  4GTX A;  4ZG6 A;  1O98 A;  5LRN A;  4KJD A;  5L0E A;  3WAY A;  3M8Y A;  2W5Q A;  1EI6 A;  1Y7A A;  2W8S A;  4UPI A;  1ALK A;  4N7T A;  5INH A;  3T01 A;  4CYS A;  2IFY A;  1AJB A;  3TX0 A;  5IJS A;  3UN3 A;  5EGE A;  3SZY A;  1AUK A;  1B8J A;  2IUC B;  1Y6V A;  3M8Z A;  4CXK A;  5LQQ A;  1ZEF A;  3DPC A;  1HQA A;  4GTW A;  3UN5 A;  3E2D A;  4MHX A;  1KH9 A;  3BDG B;  4TN0 A;  1KHN A;  3DYC A;  5K4P A;  3TG0 A;  1ELX A;  1O99 A;  3WBH A;  4KAV A;  2RH6 A;  4UPK A;  3WAX A;  1ZED A;  3UN2 A;  3NKM A;  4CXU A;  4YR1 A;  1ALH A;  4GTZ A;  5L0B A;  4QAX A;  4LRD A;  1HJK A;  2IUC A;  5EGH A;  3T02 A;  4CXS A;  1ANJ A;  1SHQ A;  3Q3Q A;  4LQY A;  5HRT A;  1KH5 A;  4LR7 A;  1ALJ A;  3B5Q A;  2W8D A;  3IDD A;  2XR9 A;  5LRM A;  2X98 A;  3BDG A;  3MK2 A;  4LR2 A;  1P49 A;  4FDJ A;  4FDI A;  5GOV A;  4ZG9 A;  3KD8 A;  3MK0 A;  4MIV A;  4NWX A;  4UPH A;  3UNY A;  1KHJ A;  2GLQ A;  2G9Y A;  1E2S P;  1KH7 A;  5GRR A;  4KM4 A;  1ELZ A;  1K7H A;  3IGY B;  5C66 A;  3T00 A;  3A52 A;  2GSN A;  1E3C P;  1E33 P;  4KAY A;  4ZGA A;  2W5S A;  2W5T A;  3BDH A;  2XRG A;  4LRC A;  2W5X A;  1ED9 A;  3NKR A;  1AJD A;  3OT9 A;  3NVL A;  3SZZ A;  4NWJ A;  5TJ3 A;  4LR9 A;  4ZG7 A;  1ALI A;  3IGZ B;  4B56 A;  2GSO A;  1EW2 A;  1ED8 A;  4GTY A;  4UOP A; 
#chains in the Genus database with same CATH topology
 3BDF A;  5DLW A;  2ANH A;  2VQR A;  1AJA A;  3UO0 A;  4KJG A;  5KXA A;  2QZU A;  4UPL A;  1EW8 A;  2W5R A;  2W5V A;  5AJ9 A;  1FSU A;  4LRA A;  1ANI A;  3NKP A;  5L0K A;  4LRE A;  1ELY A;  3NKN A;  2ZKT A;  4MY4 A;  1KH4 A;  3NKO A;  3M8W A;  1E1Z P;  1KHL A;  2GSU A;  3TWZ A;  3CMR A;  3WAV A;  1N2L A;  3LXQ A;  1EW9 A;  2GA3 A;  1KHK A;  3MK1 A;  1URB A;  1HDH A;  3NKQ A;  1URA A;  2D1G A;  1SHN A;  4UOO A;  3ED4 A;  2W5W A;  4LRB A;  5IJQ A;  4CYR A;  3M7V A;  1N2K A;  4LR8 A;  4LRF A;  1EQJ A;  5LIA A;  1EJJ A;  3WAW A;  5DLV A;  4UOR A;  5DLT A;  1AJC A;  1ZEB A;  4GTX A;  4ZG6 A;  1O98 A;  5LRN A;  4KJD A;  5L0E A;  3WAY A;  3M8Y A;  2W5Q A;  1EI6 A;  1Y7A A;  2W8S A;  4UPI A;  1ALK A;  4N7T A;  5INH A;  3T01 A;  4CYS A;  2IFY A;  1AJB A;  3TX0 A;  5IJS A;  3UN3 A;  5EGE A;  3SZY A;  1AUK A;  1B8J A;  2IUC B;  1Y6V A;  3M8Z A;  4CXK A;  5LQQ A;  1ZEF A;  3DPC A;  1HQA A;  4GTW A;  3UN5 A;  3E2D A;  4MHX A;  1KH9 A;  3BDG B;  4TN0 A;  1KHN A;  3DYC A;  5K4P A;  3TG0 A;  1ELX A;  1O99 A;  3WBH A;  4KAV A;  2RH6 A;  4UPK A;  3WAX A;  1ZED A;  3UN2 A;  3NKM A;  4CXU A;  4YR1 A;  1ALH A;  4GTZ A;  5L0B A;  4QAX A;  4LRD A;  1HJK A;  2IUC A;  5EGH A;  3T02 A;  4CXS A;  1ANJ A;  1SHQ A;  3Q3Q A;  4LQY A;  5HRT A;  1KH5 A;  4LR7 A;  1ALJ A;  3B5Q A;  2W8D A;  3IDD A;  2XR9 A;  5LRM A;  2X98 A;  3BDG A;  3MK2 A;  4LR2 A;  1P49 A;  4FDJ A;  4FDI A;  5GOV A;  4ZG9 A;  3KD8 A;  3MK0 A;  4MIV A;  4NWX A;  4UPH A;  3UNY A;  1KHJ A;  2GLQ A;  2G9Y A;  1E2S P;  1KH7 A;  5GRR A;  4KM4 A;  1ELZ A;  1K7H A;  3IGY B;  5C66 A;  3T00 A;  3A52 A;  2GSN A;  1E3C P;  1E33 P;  4KAY A;  4ZGA A;  2W5S A;  2W5T A;  3BDH A;  2XRG A;  4LRC A;  2W5X A;  1ED9 A;  3NKR A;  1AJD A;  3OT9 A;  3NVL A;  3SZZ A;  4NWJ A;  5TJ3 A;  4LR9 A;  4ZG7 A;  1ALI A;  3IGZ B;  4B56 A;  2GSO A;  1EW2 A;  1ED8 A;  4GTY A;  4UOP A; 
#chains in the Genus database with same CATH homology
 3BDF A;  5DLW A;  2ANH A;  2VQR A;  1AJA A;  3UO0 A;  4KJG A;  5KXA A;  2QZU A;  4UPL A;  1EW8 A;  2W5R A;  2W5V A;  5AJ9 A;  1FSU A;  4LRA A;  1ANI A;  3NKP A;  5L0K A;  4LRE A;  1ELY A;  3NKN A;  2ZKT A;  4MY4 A;  1KH4 A;  3NKO A;  3M8W A;  1E1Z P;  1KHL A;  2GSU A;  3TWZ A;  3CMR A;  3WAV A;  1N2L A;  3LXQ A;  1EW9 A;  2GA3 A;  1KHK A;  3MK1 A;  1URB A;  1HDH A;  3NKQ A;  1URA A;  2D1G A;  1SHN A;  4UOO A;  3ED4 A;  2W5W A;  4LRB A;  5IJQ A;  4CYR A;  3M7V A;  1N2K A;  4LR8 A;  4LRF A;  1EQJ A;  5LIA A;  1EJJ A;  3WAW A;  5DLV A;  4UOR A;  5DLT A;  1AJC A;  1ZEB A;  4GTX A;  4ZG6 A;  1O98 A;  5LRN A;  4KJD A;  5L0E A;  3WAY A;  3M8Y A;  2W5Q A;  1EI6 A;  1Y7A A;  2W8S A;  4UPI A;  1ALK A;  4N7T A;  5INH A;  3T01 A;  4CYS A;  2IFY A;  1AJB A;  3TX0 A;  5IJS A;  3UN3 A;  5EGE A;  3SZY A;  1AUK A;  1B8J A;  2IUC B;  1Y6V A;  3M8Z A;  4CXK A;  5LQQ A;  1ZEF A;  3DPC A;  1HQA A;  4GTW A;  3UN5 A;  3E2D A;  4MHX A;  1KH9 A;  3BDG B;  4TN0 A;  1KHN A;  3DYC A;  5K4P A;  3TG0 A;  1ELX A;  1O99 A;  3WBH A;  4KAV A;  2RH6 A;  4UPK A;  3WAX A;  1ZED A;  3UN2 A;  3NKM A;  4CXU A;  4YR1 A;  1ALH A;  4GTZ A;  5L0B A;  4QAX A;  4LRD A;  1HJK A;  2IUC A;  5EGH A;  3T02 A;  4CXS A;  1ANJ A;  1SHQ A;  3Q3Q A;  4LQY A;  5HRT A;  1KH5 A;  4LR7 A;  1ALJ A;  3B5Q A;  2W8D A;  3IDD A;  2XR9 A;  5LRM A;  2X98 A;  3BDG A;  3MK2 A;  4LR2 A;  1P49 A;  4FDJ A;  4FDI A;  5GOV A;  4ZG9 A;  3KD8 A;  3MK0 A;  4MIV A;  4NWX A;  4UPH A;  3UNY A;  1KHJ A;  2GLQ A;  2G9Y A;  1E2S P;  1KH7 A;  5GRR A;  4KM4 A;  1ELZ A;  1K7H A;  3IGY B;  5C66 A;  3T00 A;  3A52 A;  2GSN A;  1E3C P;  1E33 P;  4KAY A;  4ZGA A;  2W5S A;  2W5T A;  3BDH A;  2XRG A;  4LRC A;  2W5X A;  1ED9 A;  3NKR A;  1AJD A;  3OT9 A;  3NVL A;  3SZZ A;  4NWJ A;  5TJ3 A;  4LR9 A;  4ZG7 A;  1ALI A;  3IGZ B;  4B56 A;  2GSO A;  1EW2 A;  1ED8 A;  4GTY A;  4UOP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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