2Z0YA

Crystal structure of ttha0657-sam complex
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
Knots found
sequence length
224
structure length
224
Chain Sequence
RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative uncharacterized protein TTHA0657
publication title Crystal structure of TTHA0657-SAM complex
rcsb
source organism Thermus thermophilus
molecule tags Transferase
total genus 59
structure length 224
sequence length 224
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2z0yA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2z0yA02
1GZ0A 1K3RA 1MXIA 1UAKA 3KW2A 3QUVA 4YQ6A 4YVIA 1P9PA 5GMCA 4JAKA 4KDZA 4E8BA 1X7OA 3E5YA 4YVHA 4YVGA 3KY7A 3O7BA 3ILKA 2V3KA 4YPWA 4YQ0A 5CO4A 4X3LA 5D9FA 4YQIA 3DCMX 1J85A 4YQJA 1V6ZA 4FAKA 3AXZA 4YQNA 1OY5A 4YQ1A 4YQPA 1UAMA 2I6DA 4YQTA 3AIAA 2QMMA 4MCCA 4IG6A 2QWVA 2Z0YA 3NK6A 4YQ4A 4X3MA 4YQLA 4CNGA 4YQAA 1VHYA 2O3AA 4PZKA 2YY8A 4YQKA 5GM8A 1VH0A 1Z85A 4H3YA 4YQCA 4J3CA 3GYQA 4YQOA 2EGVA 4YVKA 2HA8A 1VHKA 1X7PA 4YQ9A 3KNUA 1UALA 1TO0A 4CNDA 3N4JA 2NWAA 4YQ8A 4CNFA 4JALA 4YQBA 3KTYA 3L8UA 3OINA 3OIIA 1O6DA 4YQSA 4YQ5A 4YQ3A 2V3JA 1NS5A 3ONPA 4L69A 4MCBA 2EGWA 1NXZA 4YVJA 3BBDA 4YQ2A 1UAJA 5FAIA 1IPAA 3BBHA 4YQDA 4H3ZA 5GMBA 4YQRA 4YQQA 4YPZA 4YQGA 2CX8A 1ZJRA 3OIJA 3IC6A 4MCDA 4XBOA 3AI9X 4KGNA 3IEFA 4YPYA 1V2XA 4CNEA 4YQ7A 3N4KA 3BBEA 4YPXA 3NK7A 4RG1A
chains in the Genus database with same CATH superfamily
5GADW 4FMWA 5GAEW 3PIPS 1QRSA 1GZ0A 5GAHW 1K3RA 1MXIA 2PI8A 4JYZA 1UAKA 3AIIA 3KW2A 5GAGW 3CF5S 3QUVA 4YQ6A 4YVIA 1P9PA 1GTSA 5GMCA 4JAKA 4KDZA 2PJJA 4E8BA 3J7ZV 1GTRA 1X7OA 3E5YA 4YVHA 1O0BA 2HZ7A 4WFNS 4YVGA 2AE0X 3KY7A 3O7BA 3ILKA 2V3KA 4YPWA 2ZJPS 5CO4A 4YQ0A 4X3LA 5D9FA 4YQIA 3DCMX 1J85A 4YQJA 1V6ZA 4FAKA 5BNZA 3AXZA 4YQNA 1OY5A 4YQ1A 4YQPA 2ZJQS 4JWFA 3W2VB 4P2BA 1UAMA 1UDXA 2I6DA 2PNWA 1DFUP 4YQTA 3AIAA 2QMMA 4MCCA 4IG6A 2QWVA 2Z0YA 3NK6A 4YQ4A 4X3MA 4YQLA 4CNGA 2G6GA 1B75A 4IOAS 4YQAA 1EUYA 1VHYA 2O3AA 2RE8A 4JXZA 1EUQA 4PZKA 4UY88 2YY8A 4YQKA 5GM8A 1VH0A 4JWJA 1Z85A 1ZJWA 4H3YA 4YQCA 4J3CA 4U67S 3GYQA 1QRUA 4YQOA 2EGVA 4YVKA 4JWGA 2HA8A 4WFBS 3CZBA 1VHKA 5JVHS 3X1LB 4H4KA 1X7PA 4YQ9A 3KNUA 1UALA 1TO0A 1O0CA 4CNDA 3N4JA 2NWAA 1D6KA 4YQ8A 4CNFA 4JALA 4YQBA 3W2WB 3KTYA 2GAEA 4V194 3L8UA 1EXDA 3OINA 5DM7S 3OIIA 2RD2A 1O6DA 4YQSA 3PIOS 4YQ5A 4YQ3A 5DM6S 2V3JA 1NS5A 4JXXA 3ONPA 2ZJRS 4L69A 4MCBA 4H3SA 2PICA 2EGWA 1NXZA 4YVJA 3BBDA 4YQ2A 4WFAS 1UAJA 5FAIA 1IPAA 1FEUA 4JWHA 3BBHA 4YQDA 2G5DA 4H3ZA 5GMBA 4YQRA 4YQQA 4YPZA 4YQGA 2CX8A 5IZNA 4WCES 1ZJRA 3OIJA 1NYLA 3IC6A 4MCDA 4XBOA 3AI9X 1QRTA 3DLLS 4KGNA 4IO9S 3IEFA 4YPYA 4IOCS 1V2XA 4CNEA 5HL7S 5JVGS 4WF9S 3N4KA 4YQ7A 3BBEA 1QTQA 4YPXA 3NK7A 4RG1A
chains in the Genus database with same CATH topology
4FMWA 1GZ0A 1K3RA 1MXIA 1UAKA 3KW2A 3QUVA 4YQ6A 4YVIA 1P9PA 5GMCA 4JAKA 4KDZA 4E8BA 1X7OA 3E5YA 4YVHA 4YVGA 3KY7A 3O7BA 3ILKA 2V3KA 4YPWA 4YQ0A 5CO4A 4X3LA 5D9FA 4YQIA 3DCMX 1J85A 4YQJA 1V6ZA 4FAKA 3AXZA 4YQNA 1OY5A 4YQ1A 4YQPA 4JWFA 1UAMA 2I6DA 4YQTA 3AIAA 2QMMA 4MCCA 4IG6A 2QWVA 2Z0YA 3NK6A 4YQ4A 4X3MA 4YQLA 4CNGA 4YQAA 1VHYA 2O3AA 4PZKA 2YY8A 4YQKA 5GM8A 1VH0A 4JWJA 1Z85A 4H3YA 4YQCA 4J3CA 3GYQA 4YQOA 2EGVA 4YVKA 4JWGA 2HA8A 1VHKA 1X7PA 4YQ9A 3KNUA 1UALA 1TO0A 4CNDA 3N4JA 2NWAA 4YQ8A 4CNFA 4JALA 4YQBA 3KTYA 3L8UA 3OINA 3OIIA 1O6DA 4YQSA 4YQ5A 4YQ3A 2V3JA 1NS5A 3ONPA 4L69A 4MCBA 2EGWA 1NXZA 4YVJA 3BBDA 4YQ2A 1UAJA 5FAIA 1IPAA 4JWHA 3BBHA 4YQDA 4H3ZA 5GMBA 4YQRA 4YQQA 4YPZA 4YQGA 2CX8A 1ZJRA 3OIJA 3IC6A 4MCDA 4XBOA 3AI9X 4KGNA 3IEFA 4YPYA 1V2XA 4CNEA 4YQ7A 3N4KA 3BBEA 4YPXA 3NK7A 4RG1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GZ0 A;  1K3R A;  1MXI A;  1UAK A;  3KW2 A;  3QUV A;  4YQ6 A;  4YVI A;  1P9P A;  5GMC A;  4JAK A;  4KDZ A;  4E8B A;  1X7O A;  3E5Y A;  4YVH A;  4YVG A;  3KY7 A;  3O7B A;  3ILK A;  2V3K A;  4YPW A;  4YQ0 A;  5CO4 A;  4X3L A;  5D9F A;  4YQI A;  3DCM X;  1J85 A;  4YQJ A;  1V6Z A;  4FAK A;  3AXZ A;  4YQN A;  1OY5 A;  4YQ1 A;  4YQP A;  1UAM A;  2I6D A;  4YQT A;  3AIA A;  2QMM A;  4MCC A;  4IG6 A;  2QWV A;  2Z0Y A;  3NK6 A;  4YQ4 A;  4X3M A;  4YQL A;  4CNG A;  4YQA A;  1VHY A;  2O3A A;  4PZK A;  2YY8 A;  4YQK A;  5GM8 A;  1VH0 A;  1Z85 A;  4H3Y A;  4YQC A;  4J3C A;  3GYQ A;  4YQO A;  2EGV A;  4YVK A;  2HA8 A;  1VHK A;  1X7P A;  4YQ9 A;  3KNU A;  1UAL A;  1TO0 A;  4CND A;  3N4J A;  2NWA A;  4YQ8 A;  4CNF A;  4JAL A;  4YQB A;  3KTY A;  3L8U A;  3OIN A;  3OII A;  1O6D A;  4YQS A;  4YQ5 A;  4YQ3 A;  2V3J A;  1NS5 A;  3ONP A;  4L69 A;  4MCB A;  2EGW A;  1NXZ A;  4YVJ A;  3BBD A;  4YQ2 A;  1UAJ A;  5FAI A;  1IPA A;  3BBH A;  4YQD A;  4H3Z A;  5GMB A;  4YQR A;  4YQQ A;  4YPZ A;  4YQG A;  2CX8 A;  1ZJR A;  3OIJ A;  3IC6 A;  4MCD A;  4XBO A;  3AI9 X;  4KGN A;  3IEF A;  4YPY A;  1V2X A;  4CNE A;  4YQ7 A;  3N4K A;  3BBE A;  4YPX A;  3NK7 A;  4RG1 A; 
#chains in the Genus database with same CATH topology
 5GAD W;  4FMW A;  5GAE W;  3PIP S;  1QRS A;  1GZ0 A;  5GAH W;  1K3R A;  1MXI A;  2PI8 A;  4JYZ A;  1UAK A;  3AII A;  3KW2 A;  5GAG W;  3CF5 S;  3QUV A;  4YQ6 A;  4YVI A;  1P9P A;  1GTS A;  5GMC A;  4JAK A;  4KDZ A;  2PJJ A;  4E8B A;  3J7Z V;  1GTR A;  1X7O A;  3E5Y A;  4YVH A;  1O0B A;  2HZ7 A;  4WFN S;  4YVG A;  2AE0 X;  3KY7 A;  3O7B A;  3ILK A;  2V3K A;  4YPW A;  2ZJP S;  5CO4 A;  4YQ0 A;  4X3L A;  5D9F A;  4YQI A;  3DCM X;  1J85 A;  4YQJ A;  1V6Z A;  4FAK A;  5BNZ A;  3AXZ A;  4YQN A;  1OY5 A;  4YQ1 A;  4YQP A;  2ZJQ S;  4JWF A;  3W2V B;  4P2B A;  1UAM A;  1UDX A;  2I6D A;  2PNW A;  1DFU P;  4YQT A;  3AIA A;  2QMM A;  4MCC A;  4IG6 A;  2QWV A;  2Z0Y A;  3NK6 A;  4YQ4 A;  4X3M A;  4YQL A;  4CNG A;  2G6G A;  1B75 A;  4IOA S;  4YQA A;  1EUY A;  1VHY A;  2O3A A;  2RE8 A;  4JXZ A;  1EUQ A;  4PZK A;  4UY8 8;  2YY8 A;  4YQK A;  5GM8 A;  1VH0 A;  4JWJ A;  1Z85 A;  1ZJW A;  4H3Y A;  4YQC A;  4J3C A;  4U67 S;  3GYQ A;  1QRU A;  4YQO A;  2EGV A;  4YVK A;  4JWG A;  2HA8 A;  4WFB S;  3CZB A;  1VHK A;  5JVH S;  3X1L B;  4H4K A;  1X7P A;  4YQ9 A;  3KNU A;  1UAL A;  1TO0 A;  1O0C A;  4CND A;  3N4J A;  2NWA A;  1D6K A;  4YQ8 A;  4CNF A;  4JAL A;  4YQB A;  3W2W B;  3KTY A;  2GAE A;  4V19 4;  3L8U A;  1EXD A;  3OIN A;  5DM7 S;  3OII A;  2RD2 A;  1O6D A;  4YQS A;  3PIO S;  4YQ5 A;  4YQ3 A;  5DM6 S;  2V3J A;  1NS5 A;  4JXX A;  3ONP A;  2ZJR S;  4L69 A;  4MCB A;  4H3S A;  2PIC A;  2EGW A;  1NXZ A;  4YVJ A;  3BBD A;  4YQ2 A;  4WFA S;  1UAJ A;  5FAI A;  1IPA A;  1FEU A;  4JWH A;  3BBH A;  4YQD A;  2G5D A;  4H3Z A;  5GMB A;  4YQR A;  4YQQ A;  4YPZ A;  4YQG A;  2CX8 A;  5IZN A;  4WCE S;  1ZJR A;  3OIJ A;  1NYL A;  3IC6 A;  4MCD A;  4XBO A;  3AI9 X;  1QRT A;  3DLL S;  4KGN A;  4IO9 S;  3IEF A;  4YPY A;  4IOC S;  1V2X A;  4CNE A;  5HL7 S;  5JVG S;  4WF9 S;  3N4K A;  4YQ7 A;  3BBE A;  1QTQ A;  4YPX A;  3NK7 A;  4RG1 A; 
#chains in the Genus database with same CATH homology
 4FMW A;  1GZ0 A;  1K3R A;  1MXI A;  1UAK A;  3KW2 A;  3QUV A;  4YQ6 A;  4YVI A;  1P9P A;  5GMC A;  4JAK A;  4KDZ A;  4E8B A;  1X7O A;  3E5Y A;  4YVH A;  4YVG A;  3KY7 A;  3O7B A;  3ILK A;  2V3K A;  4YPW A;  4YQ0 A;  5CO4 A;  4X3L A;  5D9F A;  4YQI A;  3DCM X;  1J85 A;  4YQJ A;  1V6Z A;  4FAK A;  3AXZ A;  4YQN A;  1OY5 A;  4YQ1 A;  4YQP A;  4JWF A;  1UAM A;  2I6D A;  4YQT A;  3AIA A;  2QMM A;  4MCC A;  4IG6 A;  2QWV A;  2Z0Y A;  3NK6 A;  4YQ4 A;  4X3M A;  4YQL A;  4CNG A;  4YQA A;  1VHY A;  2O3A A;  4PZK A;  2YY8 A;  4YQK A;  5GM8 A;  1VH0 A;  4JWJ A;  1Z85 A;  4H3Y A;  4YQC A;  4J3C A;  3GYQ A;  4YQO A;  2EGV A;  4YVK A;  4JWG A;  2HA8 A;  1VHK A;  1X7P A;  4YQ9 A;  3KNU A;  1UAL A;  1TO0 A;  4CND A;  3N4J A;  2NWA A;  4YQ8 A;  4CNF A;  4JAL A;  4YQB A;  3KTY A;  3L8U A;  3OIN A;  3OII A;  1O6D A;  4YQS A;  4YQ5 A;  4YQ3 A;  2V3J A;  1NS5 A;  3ONP A;  4L69 A;  4MCB A;  2EGW A;  1NXZ A;  4YVJ A;  3BBD A;  4YQ2 A;  1UAJ A;  5FAI A;  1IPA A;  4JWH A;  3BBH A;  4YQD A;  4H3Z A;  5GMB A;  4YQR A;  4YQQ A;  4YPZ A;  4YQG A;  2CX8 A;  1ZJR A;  3OIJ A;  3IC6 A;  4MCD A;  4XBO A;  3AI9 X;  4KGN A;  3IEF A;  4YPY A;  1V2X A;  4CNE A;  4YQ7 A;  3N4K A;  3BBE A;  4YPX A;  3NK7 A;  4RG1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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