2Z0YA

Crystal structure of ttha0657-sam complex
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
Knots found
sequence length
224
structure length
224
Chain Sequence
RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Thermus thermophilus
publication title Crystal structure of TTHA0657-SAM complex
rcsb
molecule keywords Putative uncharacterized protein TTHA0657
total genus 59
structure length 224
sequence length 224
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2z0yA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2z0yA02
3AXZA 4CNFA 4H3ZA 3IC6A 3N4KA 4YQRA 4CNGA 1UAMA 3KY7A 2O3AA 1J85A 3OIJA 1X7OA 1VH0A 4YQ8A 4X3MA 1Z85A 4YQGA 3ONPA 3AIAA 2V3KA 2QWVA 4YQ2A 4YQAA 1UALA 4FAKA 3NK6A 1GZ0A 4YQCA 4YPYA 3KW2A 3O7BA 4KDZA 1V2XA 1X7PA 4YQBA 1O6DA 4YPXA 4YVHA 1NS5A 4YQ9A 4YQDA 2HA8A 3OINA 4CNDA 1OY5A 1MXIA 4KGNA 3IEFA 5FAIA 2V3JA 4JAKA 4L69A 2CX8A 3KTYA 4XBOA 4H3YA 4JALA 4YQLA 2NWAA 4E8BA 3L8UA 3QUVA 1V6ZA 4CNEA 3E5YA 1VHKA 1P9PA 4YQKA 4YQ5A 4RG1A 5GM8A 3BBHA 4YVJA 1VHYA 4YPWA 4MCCA 4YQOA 2YY8A 4YVGA 4MCDA 4YVIA 2EGVA 3GYQA 3AI9X 3KNUA 3ILKA 5GMBA 2I6DA 4IG6A 4YQNA 1UAKA 4YQQA 4J3CA 5D9FA 4YQIA 4YQ3A 3BBEA 3NK7A 4YVKA 4YPZA 4X3LA 1NXZA 3N4JA 1TO0A 4MCBA 2EGWA 4YQSA 1ZJRA 4YQ1A 5GMCA 4PZKA 4YQPA 5CO4A 3DCMX 1K3RA 4YQTA 4YQJA 2QMMA 4YQ7A 4YQ4A 3OIIA 1IPAA 1UAJA 2Z0YA 3BBDA 4YQ0A 4YQ6A
chains in the Genus database with same CATH superfamily
4WF9S 3AXZA 4CNFA 4H3ZA 1FEUA 3IC6A 5BNZA 1O0BA 4JXXA 3N4KA 4YQRA 2G5DA 4CNGA 1UAMA 4H3SA 3KY7A 2O3AA 5GAGW 1J85A 3OIJA 1X7OA 1VH0A 3CF5S 1ZJWA 4YQ8A 4UY88 4X3MA 1NYLA 1Z85A 3ONPA 4YQGA 3AIAA 2PI8A 5DM7S 2V3KA 2QWVA 5HL7S 4YQ2A 4YQAA 1UALA 4FAKA 3NK6A 1GZ0A 4YQCA 4YPYA 3KW2A 2ZJRS 3O7BA 4JWGA 5GAHW 2RE8A 4KDZA 1V2XA 1X7PA 4JWHA 1EUYA 4YQBA 4JYZA 1O6DA 4YPXA 4WFAS 4YVHA 4WCES 1NS5A 4YQ9A 1B75A 4YQDA 2HA8A 3OINA 4IO9S 4CNDA 1OY5A 4WFNS 1MXIA 3X1LB 4KGNA 3IEFA 3W2WB 3AIIA 2ZJQS 3CZBA 5FAIA 4IOCS 2V3JA 4JAKA 4L69A 2CX8A 2PICA 2RD2A 3KTYA 4XBOA 4JWJA 4H3YA 1O0CA 4JALA 2ZJPS 4YQLA 2NWAA 4JWFA 4E8BA 3L8UA 3QUVA 1V6ZA 1D6KA 5GADW 3J7ZV 4CNEA 1QTQA 3E5YA 1VHKA 4U67S 2PJJA 1P9PA 4YQKA 5JVGS 4YQ5A 4JXZA 4RG1A 3BBHA 1QRUA 3DLLS 5GM8A 4YVJA 4FMWA 1VHYA 4YPWA 4MCCA 1EXDA 1QRSA 4YQOA 2YY8A 4H4KA 4MCDA 4YVGA 4YVIA 2EGVA 3PIOS 3GYQA 3AI9X 3KNUA 2AE0X 3ILKA 5GMBA 2I6DA 4IG6A 4YQNA 5JVHS 5IZNA 3W2VB 2GAEA 1UAKA 4YQQA 4J3CA 5D9FA 4YQIA 4P2BA 3PIPS 4YQ3A 1GTRA 3BBEA 2G6GA 3NK7A 1QRTA 1GTSA 1EUQA 4YVKA 4WFBS 4V194 4YPZA 2PNWA 1NXZA 4X3LA 3N4JA 1TO0A 4MCBA 2EGWA 4YQSA 1ZJRA 4YQ1A 5GMCA 4PZKA 4YQPA 5GAEW 2HZ7A 5CO4A 3DCMX 1K3RA 4YQTA 4YQJA 2QMMA 4YQ7A 4YQ4A 3OIIA 1IPAA 4IOAS 5DM6S 1UAJA 2Z0YA 3BBDA 1UDXA 1DFUP 4YQ0A 4YQ6A
chains in the Genus database with same CATH topology
3AXZA 4CNFA 4H3ZA 3IC6A 3N4KA 4YQRA 4CNGA 1UAMA 3KY7A 2O3AA 1J85A 3OIJA 1X7OA 1VH0A 4YQ8A 4X3MA 1Z85A 4YQGA 3ONPA 3AIAA 2V3KA 2QWVA 4YQ2A 4YQAA 1UALA 4FAKA 3NK6A 1GZ0A 4YQCA 4YPYA 3KW2A 3O7BA 4JWGA 4KDZA 1V2XA 1X7PA 4JWHA 4YQBA 1O6DA 4YPXA 4YVHA 1NS5A 4YQ9A 4YQDA 2HA8A 3OINA 4CNDA 1OY5A 1MXIA 4KGNA 3IEFA 5FAIA 2V3JA 4JAKA 4L69A 2CX8A 3KTYA 4XBOA 4JWJA 4H3YA 4JALA 4YQLA 2NWAA 4JWFA 4E8BA 3L8UA 3QUVA 1V6ZA 4CNEA 3E5YA 1VHKA 1P9PA 4YQKA 4YQ5A 4RG1A 5GM8A 3BBHA 4YVJA 4FMWA 1VHYA 4YPWA 4MCCA 4YQOA 2YY8A 4YVGA 4MCDA 4YVIA 2EGVA 3GYQA 3AI9X 3KNUA 3ILKA 5GMBA 2I6DA 4IG6A 4YQNA 1UAKA 4YQQA 4J3CA 5D9FA 4YQIA 4YQ3A 3BBEA 3NK7A 4YVKA 4YPZA 4X3LA 1NXZA 3N4JA 1TO0A 4MCBA 2EGWA 4YQSA 1ZJRA 4YQ1A 5GMCA 4PZKA 4YQPA 5CO4A 3DCMX 1K3RA 4YQTA 4YQJA 2QMMA 4YQ7A 4YQ4A 3OIIA 1IPAA 1UAJA 2Z0YA 3BBDA 4YQ0A 4YQ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AXZ A;  4CNF A;  4H3Z A;  3IC6 A;  3N4K A;  4YQR A;  4CNG A;  1UAM A;  3KY7 A;  2O3A A;  1J85 A;  3OIJ A;  1X7O A;  1VH0 A;  4YQ8 A;  4X3M A;  1Z85 A;  4YQG A;  3ONP A;  3AIA A;  2V3K A;  2QWV A;  4YQ2 A;  4YQA A;  1UAL A;  4FAK A;  3NK6 A;  1GZ0 A;  4YQC A;  4YPY A;  3KW2 A;  3O7B A;  4KDZ A;  1V2X A;  1X7P A;  4YQB A;  1O6D A;  4YPX A;  4YVH A;  1NS5 A;  4YQ9 A;  4YQD A;  2HA8 A;  3OIN A;  4CND A;  1OY5 A;  1MXI A;  4KGN A;  3IEF A;  5FAI A;  2V3J A;  4JAK A;  4L69 A;  2CX8 A;  3KTY A;  4XBO A;  4H3Y A;  4JAL A;  4YQL A;  2NWA A;  4E8B A;  3L8U A;  3QUV A;  1V6Z A;  4CNE A;  3E5Y A;  1VHK A;  1P9P A;  4YQK A;  4YQ5 A;  4RG1 A;  5GM8 A;  3BBH A;  4YVJ A;  1VHY A;  4YPW A;  4MCC A;  4YQO A;  2YY8 A;  4YVG A;  4MCD A;  4YVI A;  2EGV A;  3GYQ A;  3AI9 X;  3KNU A;  3ILK A;  5GMB A;  2I6D A;  4IG6 A;  4YQN A;  1UAK A;  4YQQ A;  4J3C A;  5D9F A;  4YQI A;  4YQ3 A;  3BBE A;  3NK7 A;  4YVK A;  4YPZ A;  4X3L A;  1NXZ A;  3N4J A;  1TO0 A;  4MCB A;  2EGW A;  4YQS A;  1ZJR A;  4YQ1 A;  5GMC A;  4PZK A;  4YQP A;  5CO4 A;  3DCM X;  1K3R A;  4YQT A;  4YQJ A;  2QMM A;  4YQ7 A;  4YQ4 A;  3OII A;  1IPA A;  1UAJ A;  2Z0Y A;  3BBD A;  4YQ0 A;  4YQ6 A; 
#chains in the Genus database with same CATH topology
 4WF9 S;  3AXZ A;  4CNF A;  4H3Z A;  1FEU A;  3IC6 A;  5BNZ A;  1O0B A;  4JXX A;  3N4K A;  4YQR A;  2G5D A;  4CNG A;  1UAM A;  4H3S A;  3KY7 A;  2O3A A;  5GAG W;  1J85 A;  3OIJ A;  1X7O A;  1VH0 A;  3CF5 S;  1ZJW A;  4YQ8 A;  4UY8 8;  4X3M A;  1NYL A;  1Z85 A;  3ONP A;  4YQG A;  3AIA A;  2PI8 A;  5DM7 S;  2V3K A;  2QWV A;  5HL7 S;  4YQ2 A;  4YQA A;  1UAL A;  4FAK A;  3NK6 A;  1GZ0 A;  4YQC A;  4YPY A;  3KW2 A;  2ZJR S;  3O7B A;  4JWG A;  5GAH W;  2RE8 A;  4KDZ A;  1V2X A;  1X7P A;  4JWH A;  1EUY A;  4YQB A;  4JYZ A;  1O6D A;  4YPX A;  4WFA S;  4YVH A;  4WCE S;  1NS5 A;  4YQ9 A;  1B75 A;  4YQD A;  2HA8 A;  3OIN A;  4IO9 S;  4CND A;  1OY5 A;  4WFN S;  1MXI A;  3X1L B;  4KGN A;  3IEF A;  3W2W B;  3AII A;  2ZJQ S;  3CZB A;  5FAI A;  4IOC S;  2V3J A;  4JAK A;  4L69 A;  2CX8 A;  2PIC A;  2RD2 A;  3KTY A;  4XBO A;  4JWJ A;  4H3Y A;  1O0C A;  4JAL A;  2ZJP S;  4YQL A;  2NWA A;  4JWF A;  4E8B A;  3L8U A;  3QUV A;  1V6Z A;  1D6K A;  5GAD W;  3J7Z V;  4CNE A;  1QTQ A;  3E5Y A;  1VHK A;  4U67 S;  2PJJ A;  1P9P A;  4YQK A;  5JVG S;  4YQ5 A;  4JXZ A;  4RG1 A;  3BBH A;  1QRU A;  3DLL S;  5GM8 A;  4YVJ A;  4FMW A;  1VHY A;  4YPW A;  4MCC A;  1EXD A;  1QRS A;  4YQO A;  2YY8 A;  4H4K A;  4MCD A;  4YVG A;  4YVI A;  2EGV A;  3PIO S;  3GYQ A;  3AI9 X;  3KNU A;  2AE0 X;  3ILK A;  5GMB A;  2I6D A;  4IG6 A;  4YQN A;  5JVH S;  5IZN A;  3W2V B;  2GAE A;  1UAK A;  4YQQ A;  4J3C A;  5D9F A;  4YQI A;  4P2B A;  3PIP S;  4YQ3 A;  1GTR A;  3BBE A;  2G6G A;  3NK7 A;  1QRT A;  1GTS A;  1EUQ A;  4YVK A;  4WFB S;  4V19 4;  4YPZ A;  2PNW A;  1NXZ A;  4X3L A;  3N4J A;  1TO0 A;  4MCB A;  2EGW A;  4YQS A;  1ZJR A;  4YQ1 A;  5GMC A;  4PZK A;  4YQP A;  5GAE W;  2HZ7 A;  5CO4 A;  3DCM X;  1K3R A;  4YQT A;  4YQJ A;  2QMM A;  4YQ7 A;  4YQ4 A;  3OII A;  1IPA A;  4IOA S;  5DM6 S;  1UAJ A;  2Z0Y A;  3BBD A;  1UDX A;  1DFU P;  4YQ0 A;  4YQ6 A; 
#chains in the Genus database with same CATH homology
 3AXZ A;  4CNF A;  4H3Z A;  3IC6 A;  3N4K A;  4YQR A;  4CNG A;  1UAM A;  3KY7 A;  2O3A A;  1J85 A;  3OIJ A;  1X7O A;  1VH0 A;  4YQ8 A;  4X3M A;  1Z85 A;  4YQG A;  3ONP A;  3AIA A;  2V3K A;  2QWV A;  4YQ2 A;  4YQA A;  1UAL A;  4FAK A;  3NK6 A;  1GZ0 A;  4YQC A;  4YPY A;  3KW2 A;  3O7B A;  4JWG A;  4KDZ A;  1V2X A;  1X7P A;  4JWH A;  4YQB A;  1O6D A;  4YPX A;  4YVH A;  1NS5 A;  4YQ9 A;  4YQD A;  2HA8 A;  3OIN A;  4CND A;  1OY5 A;  1MXI A;  4KGN A;  3IEF A;  5FAI A;  2V3J A;  4JAK A;  4L69 A;  2CX8 A;  3KTY A;  4XBO A;  4JWJ A;  4H3Y A;  4JAL A;  4YQL A;  2NWA A;  4JWF A;  4E8B A;  3L8U A;  3QUV A;  1V6Z A;  4CNE A;  3E5Y A;  1VHK A;  1P9P A;  4YQK A;  4YQ5 A;  4RG1 A;  5GM8 A;  3BBH A;  4YVJ A;  4FMW A;  1VHY A;  4YPW A;  4MCC A;  4YQO A;  2YY8 A;  4YVG A;  4MCD A;  4YVI A;  2EGV A;  3GYQ A;  3AI9 X;  3KNU A;  3ILK A;  5GMB A;  2I6D A;  4IG6 A;  4YQN A;  1UAK A;  4YQQ A;  4J3C A;  5D9F A;  4YQI A;  4YQ3 A;  3BBE A;  3NK7 A;  4YVK A;  4YPZ A;  4X3L A;  1NXZ A;  3N4J A;  1TO0 A;  4MCB A;  2EGW A;  4YQS A;  1ZJR A;  4YQ1 A;  5GMC A;  4PZK A;  4YQP A;  5CO4 A;  3DCM X;  1K3R A;  4YQT A;  4YQJ A;  2QMM A;  4YQ7 A;  4YQ4 A;  3OII A;  1IPA A;  1UAJ A;  2Z0Y A;  3BBD A;  4YQ0 A;  4YQ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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