2Z0YA

Crystal structure of ttha0657-sam complex
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
Knots found
sequence length
224
structure length
224
Chain Sequence
RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Putative uncharacterized protein TTHA0657
publication title Crystal structure of TTHA0657-SAM complex
rcsb
source organism Thermus thermophilus
total genus 59
structure length 224
sequence length 224
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2z0yA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2z0yA02
1V2XA 4JAKA 2NWAA 1K3RA 3N4KA 3BBDA 4YQ5A 4RG1A 1UAMA 3AI9X 3KW2A 3GYQA 2V3JA 4MCBA 4YQKA 4YQCA 4YQ9A 4YQQA 5GM8A 4YQ3A 4YQGA 4YQIA 1NXZA 4YPXA 2QWVA 3IEFA 4J3CA 3NK7A 4YVIA 3IC6A 4CNEA 1Z85A 3QUVA 1X7OA 1UAJA 3AXZA 4CNGA 2YY8A 1VHKA 4KDZA 2Z0YA 2I6DA 4YQ6A 4CNFA 4YQLA 3L8UA 1UAKA 4X3MA 4YPYA 4IG6A 2O3AA 4H3YA 3ONPA 1J85A 3KTYA 4YQDA 4CNDA 4YQ8A 1UALA 4H3ZA 5D9FA 1VHYA 4E8BA 1IPAA 1GZ0A 3OIJA 4YQOA 1TO0A 3BBHA 4MCDA 5FAIA 3KNUA 4YQ4A 4YQ0A 3O7BA 2EGVA 3OINA 4YQPA 4PZKA 3OIIA 4YQ2A 1NS5A 4JALA 4KGNA 4YQJA 4YVHA 4XBOA 3BBEA 4YQ7A 4YQSA 1O6DA 1X7PA 3DCMX 5CO4A 4YVGA 3ILKA 3N4JA 3AIAA 4L69A 3NK6A 1VH0A 1ZJRA 2V3KA 3KY7A 4YQNA 4YQBA 4X3LA 5GMCA 4YPWA 4FAKA 4YPZA 4YQ1A 4YQAA 2EGWA 2CX8A 4YVJA 4MCCA 1V6ZA 4YQTA 5GMBA 1P9PA 1OY5A 1MXIA 2QMMA 4YQRA 2HA8A 4YVKA 3E5YA
chains in the Genus database with same CATH superfamily
2ZJPS 1V2XA 4JAKA 2PICA 4H3SA 2NWAA 1K3RA 1EXDA 3N4KA 3BBDA 5DM6S 2G5DA 4U67S 5GAGW 1B75A 4YQ5A 4WCES 4RG1A 1UAMA 2PNWA 3KW2A 3DLLS 2V3JA 3AI9X 3GYQA 4MCBA 4YQKA 4YQCA 4YQ9A 4YQQA 4WF9S 5GM8A 5BNZA 4JXZA 5IZNA 4YQ3A 4YQGA 4YQIA 1NXZA 4YPXA 1GTSA 2QWVA 3IEFA 4JWGA 4J3CA 3NK7A 4YVIA 2ZJQS 2AE0X 1UDXA 3IC6A 4CNEA 1Z85A 2RE8A 1QRTA 3QUVA 4P2BA 5GAEW 2G6GA 1X7OA 1UAJA 3AXZA 4CNGA 2YY8A 4V194 1O0CA 1FEUA 1VHKA 4KDZA 2Z0YA 2I6DA 4YQ6A 4CNFA 4IOAS 3PIOS 4YQLA 3L8UA 1UAKA 4X3MA 4YPYA 4IG6A 2PI8A 2O3AA 4H3YA 3ONPA 5JVHS 1J85A 4WFBS 1QRSA 3KTYA 4YQDA 4CNDA 4YQ8A 1UALA 4H4KA 4H3ZA 4JYZA 5D9FA 5GAHW 1VHYA 1D6KA 4E8BA 1IPAA 1GZ0A 3OIJA 4YQOA 1TO0A 3BBHA 4MCDA 5FAIA 2RD2A 3X1LB 3KNUA 4YQ4A 4YQ0A 3W2WB 3O7BA 5HL7S 2EGVA 3OINA 4YQPA 3AIIA 1EUYA 4PZKA 3OIIA 4WFNS 4JXXA 4YQ2A 1NS5A 4JALA 1QTQA 1ZJWA 4KGNA 4YQJA 5JVGS 4YVHA 4XBOA 3BBEA 4YQ7A 3CZBA 4YQSA 3PIPS 5DM7S 4IOCS 2HZ7A 1O6DA 1X7PA 3CF5S 3DCMX 5CO4A 1GTRA 5GADW 4YVGA 3ILKA 3N4JA 3AIAA 4L69A 4IO9S 1O0BA 2ZJRS 3NK6A 1VH0A 1ZJRA 2V3KA 3KY7A 4YQNA 1NYLA 3W2VB 4WFAS 3J7ZV 1EUQA 4X3LA 4YQBA 4JWHA 4YPWA 5GMCA 4FAKA 4YPZA 4YQ1A 1QRUA 4YQAA 2EGWA 2CX8A 4YVJA 4JWFA 4FMWA 4MCCA 2GAEA 1V6ZA 4YQTA 5GMBA 4UY88 1P9PA 1OY5A 2PJJA 1MXIA 2QMMA 4YQRA 2HA8A 4JWJA 4YVKA 1DFUP 3E5YA
chains in the Genus database with same CATH topology
1V2XA 4JAKA 2NWAA 1K3RA 3N4KA 3BBDA 4YQ5A 4RG1A 1UAMA 3AI9X 3KW2A 3GYQA 2V3JA 4MCBA 4YQKA 4YQCA 4YQ9A 4YQQA 5GM8A 4YQ3A 4YQGA 4YQIA 1NXZA 4YPXA 2QWVA 3IEFA 4JWGA 4J3CA 3NK7A 4YVIA 3IC6A 4CNEA 1Z85A 3QUVA 1X7OA 1UAJA 3AXZA 4CNGA 2YY8A 1VHKA 4KDZA 2Z0YA 2I6DA 4YQ6A 4CNFA 4YQLA 3L8UA 1UAKA 4X3MA 4YPYA 4IG6A 2O3AA 4H3YA 3ONPA 1J85A 3KTYA 4YQDA 4CNDA 4YQ8A 1UALA 4H3ZA 5D9FA 1VHYA 4E8BA 1IPAA 1GZ0A 3OIJA 4YQOA 1TO0A 3BBHA 4MCDA 5FAIA 3KNUA 4YQ4A 4YQ0A 3O7BA 2EGVA 3OINA 4YQPA 4PZKA 3OIIA 4YQ2A 1NS5A 4JALA 4KGNA 4YQJA 4YVHA 4XBOA 3BBEA 4YQ7A 4YQSA 1O6DA 1X7PA 3DCMX 5CO4A 4YVGA 3ILKA 3N4JA 3AIAA 4L69A 3NK6A 1VH0A 1ZJRA 2V3KA 3KY7A 4YQNA 4YQBA 4X3LA 5GMCA 4JWHA 4YPWA 4FAKA 4YPZA 4YQ1A 4YQAA 2EGWA 2CX8A 4YVJA 4JWFA 4FMWA 4MCCA 1V6ZA 4YQTA 5GMBA 1P9PA 1OY5A 1MXIA 2QMMA 4YQRA 2HA8A 4JWJA 4YVKA 3E5YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V2X A;  4JAK A;  2NWA A;  1K3R A;  3N4K A;  3BBD A;  4YQ5 A;  4RG1 A;  1UAM A;  3AI9 X;  3KW2 A;  3GYQ A;  2V3J A;  4MCB A;  4YQK A;  4YQC A;  4YQ9 A;  4YQQ A;  5GM8 A;  4YQ3 A;  4YQG A;  4YQI A;  1NXZ A;  4YPX A;  2QWV A;  3IEF A;  4J3C A;  3NK7 A;  4YVI A;  3IC6 A;  4CNE A;  1Z85 A;  3QUV A;  1X7O A;  1UAJ A;  3AXZ A;  4CNG A;  2YY8 A;  1VHK A;  4KDZ A;  2Z0Y A;  2I6D A;  4YQ6 A;  4CNF A;  4YQL A;  3L8U A;  1UAK A;  4X3M A;  4YPY A;  4IG6 A;  2O3A A;  4H3Y A;  3ONP A;  1J85 A;  3KTY A;  4YQD A;  4CND A;  4YQ8 A;  1UAL A;  4H3Z A;  5D9F A;  1VHY A;  4E8B A;  1IPA A;  1GZ0 A;  3OIJ A;  4YQO A;  1TO0 A;  3BBH A;  4MCD A;  5FAI A;  3KNU A;  4YQ4 A;  4YQ0 A;  3O7B A;  2EGV A;  3OIN A;  4YQP A;  4PZK A;  3OII A;  4YQ2 A;  1NS5 A;  4JAL A;  4KGN A;  4YQJ A;  4YVH A;  4XBO A;  3BBE A;  4YQ7 A;  4YQS A;  1O6D A;  1X7P A;  3DCM X;  5CO4 A;  4YVG A;  3ILK A;  3N4J A;  3AIA A;  4L69 A;  3NK6 A;  1VH0 A;  1ZJR A;  2V3K A;  3KY7 A;  4YQN A;  4YQB A;  4X3L A;  5GMC A;  4YPW A;  4FAK A;  4YPZ A;  4YQ1 A;  4YQA A;  2EGW A;  2CX8 A;  4YVJ A;  4MCC A;  1V6Z A;  4YQT A;  5GMB A;  1P9P A;  1OY5 A;  1MXI A;  2QMM A;  4YQR A;  2HA8 A;  4YVK A;  3E5Y A; 
#chains in the Genus database with same CATH topology
 2ZJP S;  1V2X A;  4JAK A;  2PIC A;  4H3S A;  2NWA A;  1K3R A;  1EXD A;  3N4K A;  3BBD A;  5DM6 S;  2G5D A;  4U67 S;  5GAG W;  1B75 A;  4YQ5 A;  4WCE S;  4RG1 A;  1UAM A;  2PNW A;  3KW2 A;  3DLL S;  2V3J A;  3AI9 X;  3GYQ A;  4MCB A;  4YQK A;  4YQC A;  4YQ9 A;  4YQQ A;  4WF9 S;  5GM8 A;  5BNZ A;  4JXZ A;  5IZN A;  4YQ3 A;  4YQG A;  4YQI A;  1NXZ A;  4YPX A;  1GTS A;  2QWV A;  3IEF A;  4JWG A;  4J3C A;  3NK7 A;  4YVI A;  2ZJQ S;  2AE0 X;  1UDX A;  3IC6 A;  4CNE A;  1Z85 A;  2RE8 A;  1QRT A;  3QUV A;  4P2B A;  5GAE W;  2G6G A;  1X7O A;  1UAJ A;  3AXZ A;  4CNG A;  2YY8 A;  4V19 4;  1O0C A;  1FEU A;  1VHK A;  4KDZ A;  2Z0Y A;  2I6D A;  4YQ6 A;  4CNF A;  4IOA S;  3PIO S;  4YQL A;  3L8U A;  1UAK A;  4X3M A;  4YPY A;  4IG6 A;  2PI8 A;  2O3A A;  4H3Y A;  3ONP A;  5JVH S;  1J85 A;  4WFB S;  1QRS A;  3KTY A;  4YQD A;  4CND A;  4YQ8 A;  1UAL A;  4H4K A;  4H3Z A;  4JYZ A;  5D9F A;  5GAH W;  1VHY A;  1D6K A;  4E8B A;  1IPA A;  1GZ0 A;  3OIJ A;  4YQO A;  1TO0 A;  3BBH A;  4MCD A;  5FAI A;  2RD2 A;  3X1L B;  3KNU A;  4YQ4 A;  4YQ0 A;  3W2W B;  3O7B A;  5HL7 S;  2EGV A;  3OIN A;  4YQP A;  3AII A;  1EUY A;  4PZK A;  3OII A;  4WFN S;  4JXX A;  4YQ2 A;  1NS5 A;  4JAL A;  1QTQ A;  1ZJW A;  4KGN A;  4YQJ A;  5JVG S;  4YVH A;  4XBO A;  3BBE A;  4YQ7 A;  3CZB A;  4YQS A;  3PIP S;  5DM7 S;  4IOC S;  2HZ7 A;  1O6D A;  1X7P A;  3CF5 S;  3DCM X;  5CO4 A;  1GTR A;  5GAD W;  4YVG A;  3ILK A;  3N4J A;  3AIA A;  4L69 A;  4IO9 S;  1O0B A;  2ZJR S;  3NK6 A;  1VH0 A;  1ZJR A;  2V3K A;  3KY7 A;  4YQN A;  1NYL A;  3W2V B;  4WFA S;  3J7Z V;  1EUQ A;  4X3L A;  4YQB A;  4JWH A;  4YPW A;  5GMC A;  4FAK A;  4YPZ A;  4YQ1 A;  1QRU A;  4YQA A;  2EGW A;  2CX8 A;  4YVJ A;  4JWF A;  4FMW A;  4MCC A;  2GAE A;  1V6Z A;  4YQT A;  5GMB A;  4UY8 8;  1P9P A;  1OY5 A;  2PJJ A;  1MXI A;  2QMM A;  4YQR A;  2HA8 A;  4JWJ A;  4YVK A;  1DFU P;  3E5Y A; 
#chains in the Genus database with same CATH homology
 1V2X A;  4JAK A;  2NWA A;  1K3R A;  3N4K A;  3BBD A;  4YQ5 A;  4RG1 A;  1UAM A;  3AI9 X;  3KW2 A;  3GYQ A;  2V3J A;  4MCB A;  4YQK A;  4YQC A;  4YQ9 A;  4YQQ A;  5GM8 A;  4YQ3 A;  4YQG A;  4YQI A;  1NXZ A;  4YPX A;  2QWV A;  3IEF A;  4JWG A;  4J3C A;  3NK7 A;  4YVI A;  3IC6 A;  4CNE A;  1Z85 A;  3QUV A;  1X7O A;  1UAJ A;  3AXZ A;  4CNG A;  2YY8 A;  1VHK A;  4KDZ A;  2Z0Y A;  2I6D A;  4YQ6 A;  4CNF A;  4YQL A;  3L8U A;  1UAK A;  4X3M A;  4YPY A;  4IG6 A;  2O3A A;  4H3Y A;  3ONP A;  1J85 A;  3KTY A;  4YQD A;  4CND A;  4YQ8 A;  1UAL A;  4H3Z A;  5D9F A;  1VHY A;  4E8B A;  1IPA A;  1GZ0 A;  3OIJ A;  4YQO A;  1TO0 A;  3BBH A;  4MCD A;  5FAI A;  3KNU A;  4YQ4 A;  4YQ0 A;  3O7B A;  2EGV A;  3OIN A;  4YQP A;  4PZK A;  3OII A;  4YQ2 A;  1NS5 A;  4JAL A;  4KGN A;  4YQJ A;  4YVH A;  4XBO A;  3BBE A;  4YQ7 A;  4YQS A;  1O6D A;  1X7P A;  3DCM X;  5CO4 A;  4YVG A;  3ILK A;  3N4J A;  3AIA A;  4L69 A;  3NK6 A;  1VH0 A;  1ZJR A;  2V3K A;  3KY7 A;  4YQN A;  4YQB A;  4X3L A;  5GMC A;  4JWH A;  4YPW A;  4FAK A;  4YPZ A;  4YQ1 A;  4YQA A;  2EGW A;  2CX8 A;  4YVJ A;  4JWF A;  4FMW A;  4MCC A;  1V6Z A;  4YQT A;  5GMB A;  1P9P A;  1OY5 A;  1MXI A;  2QMM A;  4YQR A;  2HA8 A;  4JWJ A;  4YVK A;  3E5Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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