3BDGB

Crystal structure of wild-type/t155v mixed dimer of e. coli alkaline phosphatase
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
Knots found
sequence length
446
structure length
433
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Alkaline phosphatase
publication title The Active-Site Trimetallic Cluster of Alkaline Phosphatase is Lost Upon Isosteric Mutation at the Mg2+-Coordinating Residue Threonine-155
rcsb
source organism Escherichia coli
total genus 159
structure length 433
sequence length 446
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2007-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3bdgB00
3NKRA 5L0KA 5LRNA 1O98A 5K4PA 2W5VA 3SZZA 1AUKA 4LQYA 3T00A 1EW9A 4NWXA 1ALKA 4LR8A 1KH9A 1AJAA 3IGZB 3NKOA 4ZG6A 3IGYB 4KAYA 2W8SA 1E3CP 3MK1A 1EQJA 4YR1A 4LR9A 1KH4A 1ANIA 1ALHA 1EW8A 3MK0A 4KJDA 4UPHA 3TG0A 5HRTA 4FDJA 3E2DA 4UPIA 3NKPA 1SHQA 4GTZA 1KHNA 4CXUA 3MK2A 5C66A 2VQRA 5INHA 4MIVA 3ED4A 4ZG9A 4LR2A 2W5QA 4MHXA 3LXQA 3NKMA 2IUCA 2X98A 1ALJA 4B56A 3M8ZA 1EW2A 1ELXA 1Y7AA 3BDGA 5DLTA 3DPCA 4UOOA 1HJKA 1EI6A 4GTYA 3SZYA 1FSUA 5LRMA 5GRRA 2G9YA 4N7TA 4CYRA 4FDIA 3UN2A 3TWZA 1ANJA 1ELZA 5L0BA 1E33P 4LRAA 1E1ZP 4MY4A 5DLWA 5IJQA 5KXAA 1AJDA 1ZEBA 4GTXA 2ZKTA 2W5SA 4LR7A 4UORA 5TJ3A 5LQQA 1ZEDA 3WBHA 1KHLA 4KAVA 3UO0A 1KHKA 1O99A 5L0EA 2XRGA 4LRDA 1KH7A 3M8YA 4UOPA 3CMRA 4GTWA 2GA3A 1B8JA 4CXSA 2XR9A 3UN3A 1N2KA 1KH5A 2W8DA 1AJCA 2RH6A 4ZG7A 1HQAA 4NWJA 3B5QA 5EGEA 1HDHA 1AJBA 1N2LA 5GOVA 3M8WA 3NKNA 1ED9A 1EJJA 4CXKA 3A52A 5LIAA 1ALIA 4KJGA 1KHJA 3NKQA 4UPLA 1URAA 2ANHA 3OT9A 4QAXA 4TN0A 2W5TA 5EGHA 3WAXA 4KM4A 1Y6VA 3KD8A 4LREA 5DLVA 3T01A 1ELYA 4LRCA 1E2SP 2GSOA 2GSNA 2IUCB 1ED8A 2W5RA 2D1GA 5IJSA 4CYSA 3WAYA 3UN5A 3TX0A 1SHNA 3BDGB 5AJ9A 3UNYA 2GLQA 2QZUA 3WAWA 3Q3QA 4LRFA 4ZGAA 3BDFA 3NVLA 4LRBA 4UPKA 3T02A 3WAVA 2W5WA 1ZEFA 2W5XA 3BDHA 2IFYA 3DYCA 1K7HA 1URBA 3M7VA 1P49A 2GSUA 3IDDA
chains in the Genus database with same CATH superfamily
3NKRA 5L0KA 5LRNA 1O98A 5K4PA 2W5VA 3SZZA 1AUKA 4LQYA 3T00A 1EW9A 4NWXA 1ALKA 4LR8A 1KH9A 1AJAA 3IGZB 3NKOA 4ZG6A 3IGYB 4KAYA 2W8SA 1E3CP 3MK1A 1EQJA 4YR1A 4LR9A 1KH4A 1ANIA 1ALHA 1EW8A 3MK0A 4KJDA 4UPHA 3TG0A 5HRTA 4FDJA 3E2DA 4UPIA 3NKPA 1SHQA 4GTZA 1KHNA 4CXUA 3MK2A 5C66A 2VQRA 5INHA 4MIVA 3ED4A 4ZG9A 4LR2A 2W5QA 4MHXA 3LXQA 3NKMA 2IUCA 2X98A 1ALJA 4B56A 3M8ZA 1EW2A 1ELXA 1Y7AA 3BDGA 5DLTA 3DPCA 4UOOA 1HJKA 1EI6A 4GTYA 3SZYA 1FSUA 5LRMA 5GRRA 2G9YA 4N7TA 4CYRA 4FDIA 3UN2A 3TWZA 1ANJA 1ELZA 5L0BA 1E33P 4LRAA 1E1ZP 4MY4A 5DLWA 5IJQA 5KXAA 1AJDA 1ZEBA 4GTXA 2ZKTA 2W5SA 4LR7A 4UORA 5TJ3A 5LQQA 1ZEDA 3WBHA 1KHLA 4KAVA 3UO0A 1KHKA 1O99A 5L0EA 2XRGA 4LRDA 1KH7A 3M8YA 4UOPA 3CMRA 4GTWA 2GA3A 1B8JA 4CXSA 2XR9A 3UN3A 1N2KA 1KH5A 2W8DA 1AJCA 2RH6A 4ZG7A 1HQAA 4NWJA 3B5QA 5EGEA 1HDHA 1AJBA 1N2LA 5GOVA 3M8WA 3NKNA 1ED9A 1EJJA 4CXKA 3A52A 5LIAA 1ALIA 4KJGA 1KHJA 3NKQA 4UPLA 1URAA 2ANHA 3OT9A 4QAXA 4TN0A 2W5TA 5EGHA 3WAXA 4KM4A 1Y6VA 3KD8A 4LREA 5DLVA 3T01A 1ELYA 4LRCA 1E2SP 2GSOA 2GSNA 2IUCB 1ED8A 2W5RA 2D1GA 5IJSA 4CYSA 3WAYA 3UN5A 3TX0A 1SHNA 3BDGB 5AJ9A 3UNYA 2GLQA 2QZUA 3WAWA 3Q3QA 4LRFA 4ZGAA 3BDFA 3NVLA 4LRBA 4UPKA 3T02A 3WAVA 2W5WA 1ZEFA 2W5XA 3BDHA 2IFYA 3DYCA 1K7HA 1URBA 3M7VA 1P49A 2GSUA 3IDDA
chains in the Genus database with same CATH topology
3NKRA 5L0KA 5LRNA 1O98A 5K4PA 2W5VA 3SZZA 1AUKA 4LQYA 3T00A 1EW9A 4NWXA 1ALKA 4LR8A 1KH9A 1AJAA 3IGZB 3NKOA 4ZG6A 3IGYB 4KAYA 2W8SA 1E3CP 3MK1A 1EQJA 4YR1A 4LR9A 1KH4A 1ANIA 1ALHA 1EW8A 3MK0A 4KJDA 4UPHA 3TG0A 5HRTA 4FDJA 3E2DA 4UPIA 3NKPA 1SHQA 4GTZA 1KHNA 4CXUA 3MK2A 5C66A 2VQRA 5INHA 4MIVA 3ED4A 4ZG9A 4LR2A 2W5QA 4MHXA 3LXQA 3NKMA 2IUCA 2X98A 1ALJA 4B56A 3M8ZA 1EW2A 1ELXA 1Y7AA 3BDGA 5DLTA 3DPCA 4UOOA 1HJKA 1EI6A 4GTYA 3SZYA 1FSUA 5LRMA 5GRRA 2G9YA 4N7TA 4CYRA 4FDIA 3UN2A 3TWZA 1ANJA 1ELZA 5L0BA 1E33P 4LRAA 1E1ZP 4MY4A 5DLWA 5IJQA 5KXAA 1AJDA 1ZEBA 4GTXA 2ZKTA 2W5SA 4LR7A 4UORA 5TJ3A 5LQQA 1ZEDA 3WBHA 1KHLA 4KAVA 3UO0A 1KHKA 1O99A 5L0EA 2XRGA 4LRDA 1KH7A 3M8YA 4UOPA 3CMRA 4GTWA 2GA3A 1B8JA 4CXSA 2XR9A 3UN3A 1N2KA 1KH5A 2W8DA 1AJCA 2RH6A 4ZG7A 1HQAA 4NWJA 3B5QA 5EGEA 1HDHA 1AJBA 1N2LA 5GOVA 3M8WA 3NKNA 1ED9A 1EJJA 4CXKA 3A52A 5LIAA 1ALIA 4KJGA 1KHJA 3NKQA 4UPLA 1URAA 2ANHA 3OT9A 4QAXA 4TN0A 2W5TA 5EGHA 3WAXA 4KM4A 1Y6VA 3KD8A 4LREA 5DLVA 3T01A 1ELYA 4LRCA 1E2SP 2GSOA 2GSNA 2IUCB 1ED8A 2W5RA 2D1GA 5IJSA 4CYSA 3WAYA 3UN5A 3TX0A 1SHNA 3BDGB 5AJ9A 3UNYA 2GLQA 2QZUA 3WAWA 3Q3QA 4LRFA 4ZGAA 3BDFA 3NVLA 4LRBA 4UPKA 3T02A 3WAVA 2W5WA 1ZEFA 2W5XA 3BDHA 2IFYA 3DYCA 1K7HA 1URBA 3M7VA 1P49A 2GSUA 3IDDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NKR A;  5L0K A;  5LRN A;  1O98 A;  5K4P A;  2W5V A;  3SZZ A;  1AUK A;  4LQY A;  3T00 A;  1EW9 A;  4NWX A;  1ALK A;  4LR8 A;  1KH9 A;  1AJA A;  3IGZ B;  3NKO A;  4ZG6 A;  3IGY B;  4KAY A;  2W8S A;  1E3C P;  3MK1 A;  1EQJ A;  4YR1 A;  4LR9 A;  1KH4 A;  1ANI A;  1ALH A;  1EW8 A;  3MK0 A;  4KJD A;  4UPH A;  3TG0 A;  5HRT A;  4FDJ A;  3E2D A;  4UPI A;  3NKP A;  1SHQ A;  4GTZ A;  1KHN A;  4CXU A;  3MK2 A;  5C66 A;  2VQR A;  5INH A;  4MIV A;  3ED4 A;  4ZG9 A;  4LR2 A;  2W5Q A;  4MHX A;  3LXQ A;  3NKM A;  2IUC A;  2X98 A;  1ALJ A;  4B56 A;  3M8Z A;  1EW2 A;  1ELX A;  1Y7A A;  3BDG A;  5DLT A;  3DPC A;  4UOO A;  1HJK A;  1EI6 A;  4GTY A;  3SZY A;  1FSU A;  5LRM A;  5GRR A;  2G9Y A;  4N7T A;  4CYR A;  4FDI A;  3UN2 A;  3TWZ A;  1ANJ A;  1ELZ A;  5L0B A;  1E33 P;  4LRA A;  1E1Z P;  4MY4 A;  5DLW A;  5IJQ A;  5KXA A;  1AJD A;  1ZEB A;  4GTX A;  2ZKT A;  2W5S A;  4LR7 A;  4UOR A;  5TJ3 A;  5LQQ A;  1ZED A;  3WBH A;  1KHL A;  4KAV A;  3UO0 A;  1KHK A;  1O99 A;  5L0E A;  2XRG A;  4LRD A;  1KH7 A;  3M8Y A;  4UOP A;  3CMR A;  4GTW A;  2GA3 A;  1B8J A;  4CXS A;  2XR9 A;  3UN3 A;  1N2K A;  1KH5 A;  2W8D A;  1AJC A;  2RH6 A;  4ZG7 A;  1HQA A;  4NWJ A;  3B5Q A;  5EGE A;  1HDH A;  1AJB A;  1N2L A;  5GOV A;  3M8W A;  3NKN A;  1ED9 A;  1EJJ A;  4CXK A;  3A52 A;  5LIA A;  1ALI A;  4KJG A;  1KHJ A;  3NKQ A;  4UPL A;  1URA A;  2ANH A;  3OT9 A;  4QAX A;  4TN0 A;  2W5T A;  5EGH A;  3WAX A;  4KM4 A;  1Y6V A;  3KD8 A;  4LRE A;  5DLV A;  3T01 A;  1ELY A;  4LRC A;  1E2S P;  2GSO A;  2GSN A;  2IUC B;  1ED8 A;  2W5R A;  2D1G A;  5IJS A;  4CYS A;  3WAY A;  3UN5 A;  3TX0 A;  1SHN A;  3BDG B;  5AJ9 A;  3UNY A;  2GLQ A;  2QZU A;  3WAW A;  3Q3Q A;  4LRF A;  4ZGA A;  3BDF A;  3NVL A;  4LRB A;  4UPK A;  3T02 A;  3WAV A;  2W5W A;  1ZEF A;  2W5X A;  3BDH A;  2IFY A;  3DYC A;  1K7H A;  1URB A;  3M7V A;  1P49 A;  2GSU A;  3IDD A; 
#chains in the Genus database with same CATH topology
 3NKR A;  5L0K A;  5LRN A;  1O98 A;  5K4P A;  2W5V A;  3SZZ A;  1AUK A;  4LQY A;  3T00 A;  1EW9 A;  4NWX A;  1ALK A;  4LR8 A;  1KH9 A;  1AJA A;  3IGZ B;  3NKO A;  4ZG6 A;  3IGY B;  4KAY A;  2W8S A;  1E3C P;  3MK1 A;  1EQJ A;  4YR1 A;  4LR9 A;  1KH4 A;  1ANI A;  1ALH A;  1EW8 A;  3MK0 A;  4KJD A;  4UPH A;  3TG0 A;  5HRT A;  4FDJ A;  3E2D A;  4UPI A;  3NKP A;  1SHQ A;  4GTZ A;  1KHN A;  4CXU A;  3MK2 A;  5C66 A;  2VQR A;  5INH A;  4MIV A;  3ED4 A;  4ZG9 A;  4LR2 A;  2W5Q A;  4MHX A;  3LXQ A;  3NKM A;  2IUC A;  2X98 A;  1ALJ A;  4B56 A;  3M8Z A;  1EW2 A;  1ELX A;  1Y7A A;  3BDG A;  5DLT A;  3DPC A;  4UOO A;  1HJK A;  1EI6 A;  4GTY A;  3SZY A;  1FSU A;  5LRM A;  5GRR A;  2G9Y A;  4N7T A;  4CYR A;  4FDI A;  3UN2 A;  3TWZ A;  1ANJ A;  1ELZ A;  5L0B A;  1E33 P;  4LRA A;  1E1Z P;  4MY4 A;  5DLW A;  5IJQ A;  5KXA A;  1AJD A;  1ZEB A;  4GTX A;  2ZKT A;  2W5S A;  4LR7 A;  4UOR A;  5TJ3 A;  5LQQ A;  1ZED A;  3WBH A;  1KHL A;  4KAV A;  3UO0 A;  1KHK A;  1O99 A;  5L0E A;  2XRG A;  4LRD A;  1KH7 A;  3M8Y A;  4UOP A;  3CMR A;  4GTW A;  2GA3 A;  1B8J A;  4CXS A;  2XR9 A;  3UN3 A;  1N2K A;  1KH5 A;  2W8D A;  1AJC A;  2RH6 A;  4ZG7 A;  1HQA A;  4NWJ A;  3B5Q A;  5EGE A;  1HDH A;  1AJB A;  1N2L A;  5GOV A;  3M8W A;  3NKN A;  1ED9 A;  1EJJ A;  4CXK A;  3A52 A;  5LIA A;  1ALI A;  4KJG A;  1KHJ A;  3NKQ A;  4UPL A;  1URA A;  2ANH A;  3OT9 A;  4QAX A;  4TN0 A;  2W5T A;  5EGH A;  3WAX A;  4KM4 A;  1Y6V A;  3KD8 A;  4LRE A;  5DLV A;  3T01 A;  1ELY A;  4LRC A;  1E2S P;  2GSO A;  2GSN A;  2IUC B;  1ED8 A;  2W5R A;  2D1G A;  5IJS A;  4CYS A;  3WAY A;  3UN5 A;  3TX0 A;  1SHN A;  3BDG B;  5AJ9 A;  3UNY A;  2GLQ A;  2QZU A;  3WAW A;  3Q3Q A;  4LRF A;  4ZGA A;  3BDF A;  3NVL A;  4LRB A;  4UPK A;  3T02 A;  3WAV A;  2W5W A;  1ZEF A;  2W5X A;  3BDH A;  2IFY A;  3DYC A;  1K7H A;  1URB A;  3M7V A;  1P49 A;  2GSU A;  3IDD A; 
#chains in the Genus database with same CATH homology
 3NKR A;  5L0K A;  5LRN A;  1O98 A;  5K4P A;  2W5V A;  3SZZ A;  1AUK A;  4LQY A;  3T00 A;  1EW9 A;  4NWX A;  1ALK A;  4LR8 A;  1KH9 A;  1AJA A;  3IGZ B;  3NKO A;  4ZG6 A;  3IGY B;  4KAY A;  2W8S A;  1E3C P;  3MK1 A;  1EQJ A;  4YR1 A;  4LR9 A;  1KH4 A;  1ANI A;  1ALH A;  1EW8 A;  3MK0 A;  4KJD A;  4UPH A;  3TG0 A;  5HRT A;  4FDJ A;  3E2D A;  4UPI A;  3NKP A;  1SHQ A;  4GTZ A;  1KHN A;  4CXU A;  3MK2 A;  5C66 A;  2VQR A;  5INH A;  4MIV A;  3ED4 A;  4ZG9 A;  4LR2 A;  2W5Q A;  4MHX A;  3LXQ A;  3NKM A;  2IUC A;  2X98 A;  1ALJ A;  4B56 A;  3M8Z A;  1EW2 A;  1ELX A;  1Y7A A;  3BDG A;  5DLT A;  3DPC A;  4UOO A;  1HJK A;  1EI6 A;  4GTY A;  3SZY A;  1FSU A;  5LRM A;  5GRR A;  2G9Y A;  4N7T A;  4CYR A;  4FDI A;  3UN2 A;  3TWZ A;  1ANJ A;  1ELZ A;  5L0B A;  1E33 P;  4LRA A;  1E1Z P;  4MY4 A;  5DLW A;  5IJQ A;  5KXA A;  1AJD A;  1ZEB A;  4GTX A;  2ZKT A;  2W5S A;  4LR7 A;  4UOR A;  5TJ3 A;  5LQQ A;  1ZED A;  3WBH A;  1KHL A;  4KAV A;  3UO0 A;  1KHK A;  1O99 A;  5L0E A;  2XRG A;  4LRD A;  1KH7 A;  3M8Y A;  4UOP A;  3CMR A;  4GTW A;  2GA3 A;  1B8J A;  4CXS A;  2XR9 A;  3UN3 A;  1N2K A;  1KH5 A;  2W8D A;  1AJC A;  2RH6 A;  4ZG7 A;  1HQA A;  4NWJ A;  3B5Q A;  5EGE A;  1HDH A;  1AJB A;  1N2L A;  5GOV A;  3M8W A;  3NKN A;  1ED9 A;  1EJJ A;  4CXK A;  3A52 A;  5LIA A;  1ALI A;  4KJG A;  1KHJ A;  3NKQ A;  4UPL A;  1URA A;  2ANH A;  3OT9 A;  4QAX A;  4TN0 A;  2W5T A;  5EGH A;  3WAX A;  4KM4 A;  1Y6V A;  3KD8 A;  4LRE A;  5DLV A;  3T01 A;  1ELY A;  4LRC A;  1E2S P;  2GSO A;  2GSN A;  2IUC B;  1ED8 A;  2W5R A;  2D1G A;  5IJS A;  4CYS A;  3WAY A;  3UN5 A;  3TX0 A;  1SHN A;  3BDG B;  5AJ9 A;  3UNY A;  2GLQ A;  2QZU A;  3WAW A;  3Q3Q A;  4LRF A;  4ZGA A;  3BDF A;  3NVL A;  4LRB A;  4UPK A;  3T02 A;  3WAV A;  2W5W A;  1ZEF A;  2W5X A;  3BDH A;  2IFY A;  3DYC A;  1K7H A;  1URB A;  3M7V A;  1P49 A;  2GSU A;  3IDD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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