3IGYB

Crystal structures of leishmania mexicana phosphoglycerate mutase at high cobalt concentrations
Total Genus 205
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
205
Knots found
sequence length
549
structure length
549
Chain Sequence
LLLKPHKDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNRHFRCVRAHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARHFHSAKEAITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKIDEKHETFKEVPSDRVQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKPMKDGNGNVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSLIYVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
molecule keywords Cofactor-independent phosphoglycerate mutase
publication title Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass
pubmed doi rcsb
source organism Leishmania mexicana
total genus 205
structure length 549
sequence length 549
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2009-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01676 Metalloenzyme Metalloenzyme superfamily
B PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3igyB01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 3igyB02
3UO0A 4UPIA 1EW2A 4GTZA 4QAXA 1E33P 4LRFA 3M7VA 5IJQA 3M8WA 3NKQA 3NKRA 1ELYA 3M8ZA 3NVLA 5L0EA 1URBA 5GOVA 4UPKA 5LQQA 1AJBA 4FDIA 3SZYA 4ZG9A 3T02A 3OT9A 3WAWA 4LRBA 3DPCA 3LXQA 4UPLA 1ANIA 3NKOA 3TG0A 2GSNA 1EJJA 2G9YA 1HDHA 1AJAA 3ED4A 2W5RA 3A52A 1EW9A 3NKMA 4N7TA 4NWJA 3MK1A 1AUKA 2XRGA 4GTXA 1HQAA 4MHXA 2D1GA 1ED9A 3T01A 3WAVA 3KD8A 1HJKA 4LQYA 5KXAA 2W5WA 3E2DA 5K4PA 5TJ3A 4LRAA 1AJDA 1EI6A 1B8JA 1K7HA 1EW8A 3MK2A 1URAA 4GTWA 1O99A 3NKPA 1N2KA 2XR9A 4LR9A 3TWZA 4CYRA 1SHQA 5EGEA 4LREA 4UOPA 2W8DA 4B56A 4YR1A 1KHKA 2QZUA 5AJ9A 5LRMA 5DLWA 4LR7A 3WAYA 2RH6A 5INHA 4KM4A 2ZKTA 3UN2A 1E3CP 4LR2A 2GA3A 2ANHA 1N2LA 4LRDA 4MIVA 4ZGAA 1E1ZP 4LRCA 5DLTA 2IUCA 3IGZB 4CXSA 2W5VA 2W5XA 4CXKA 2IFYA 1ELZA 2IUCB 1ALIA 4FDJA 1Y6VA 3DYCA 3BDFA 2W5TA 1SHNA 3T00A 1KH4A 3SZZA 3NKNA 2GSOA 2VQRA 3UN3A 1KHLA 2W5QA 4LR8A 3BDGA 5GRRA 5LIAA 2W8SA 1KHNA 1KH9A 2W5SA 1KH7A 1ANJA 3UNYA 3BDGB 3MK0A 1ED8A 3IDDA 1Y7AA 3TX0A 4CYSA 5L0BA 4NWXA 1KHJA 1ZEBA 1AJCA 3B5QA 3WAXA 5C66A 1ALJA 4KJDA 1P49A 4ZG6A 2GLQA 1FSUA 1KH5A 4KAYA 1ALKA 1O98A 4MY4A 4UORA 1ZEDA 3IGYB 4GTYA 4ZG7A 5IJSA 4KJGA 1EQJA 1E2SP 4KAVA 1ZEFA 2X98A 3M8YA 4CXUA 3Q3QA 3WBHA 3CMRA 3UN5A 5EGHA 5DLVA 5HRTA 4UOOA 1ELXA 1ALHA 4UPHA 2GSUA 5L0KA 4TN0A 5LRNA 3BDHA
chains in the Genus database with same CATH superfamily
3UO0A 4UPIA 1EW2A 4GTZA 4QAXA 1E33P 4LRFA 3M7VA 5IJQA 3M8WA 3NKQA 3NKRA 1ELYA 3M8ZA 3NVLA 5L0EA 1URBA 5GOVA 4UPKA 5LQQA 1AJBA 4FDIA 3SZYA 4ZG9A 3T02A 3OT9A 3WAWA 4LRBA 3DPCA 3LXQA 4UPLA 1ANIA 3NKOA 3TG0A 2GSNA 1EJJA 2G9YA 1HDHA 1AJAA 3ED4A 2W5RA 3A52A 1EW9A 3NKMA 4N7TA 4NWJA 3MK1A 1AUKA 2XRGA 4GTXA 1HQAA 4MHXA 2D1GA 1ED9A 3T01A 3WAVA 3KD8A 1HJKA 4LQYA 5KXAA 2W5WA 3E2DA 5K4PA 5TJ3A 4LRAA 1AJDA 1EI6A 1B8JA 1K7HA 1EW8A 3MK2A 1URAA 4GTWA 1O99A 3NKPA 1N2KA 2XR9A 4LR9A 3TWZA 4CYRA 1SHQA 5EGEA 4LREA 4UOPA 2W8DA 4B56A 4YR1A 1KHKA 2QZUA 5AJ9A 5LRMA 5DLWA 4LR7A 3WAYA 2RH6A 5INHA 4KM4A 2ZKTA 3UN2A 1E3CP 4LR2A 2GA3A 2ANHA 1N2LA 4LRDA 4MIVA 4ZGAA 1E1ZP 4LRCA 5DLTA 2IUCA 3IGZB 4CXSA 2W5VA 2W5XA 4CXKA 2IFYA 1ELZA 2IUCB 1ALIA 4FDJA 1Y6VA 3DYCA 3BDFA 2W5TA 1SHNA 3T00A 1KH4A 3SZZA 3NKNA 2GSOA 2VQRA 3UN3A 1KHLA 2W5QA 4LR8A 3BDGA 5GRRA 5LIAA 2W8SA 1KHNA 1KH9A 2W5SA 1KH7A 1ANJA 3UNYA 3BDGB 3MK0A 1ED8A 3IDDA 1Y7AA 3TX0A 4CYSA 5L0BA 4NWXA 1KHJA 1ZEBA 1AJCA 3B5QA 3WAXA 5C66A 1ALJA 4KJDA 1P49A 4ZG6A 2GLQA 1FSUA 1KH5A 4KAYA 1ALKA 1O98A 4MY4A 4UORA 1ZEDA 3IGYB 4GTYA 4ZG7A 5IJSA 4KJGA 1EQJA 1E2SP 4KAVA 1ZEFA 2X98A 3M8YA 4CXUA 3Q3QA 3WBHA 3CMRA 3UN5A 5EGHA 5DLVA 5HRTA 4UOOA 1ELXA 1ALHA 4UPHA 2GSUA 5L0KA 4TN0A 5LRNA 3BDHA
chains in the Genus database with same CATH topology
3UO0A 4UPIA 1EW2A 4GTZA 4QAXA 1E33P 4LRFA 3M7VA 5IJQA 3M8WA 3NKQA 3NKRA 1ELYA 3M8ZA 3NVLA 5L0EA 1URBA 5GOVA 4UPKA 5LQQA 1AJBA 4FDIA 3SZYA 4ZG9A 3T02A 3OT9A 3WAWA 4LRBA 3DPCA 3LXQA 4UPLA 1ANIA 3NKOA 3TG0A 2GSNA 1EJJA 2G9YA 1HDHA 1AJAA 3ED4A 2W5RA 3A52A 1EW9A 3NKMA 4N7TA 4NWJA 3MK1A 1AUKA 2XRGA 4GTXA 1HQAA 4MHXA 2D1GA 1ED9A 3T01A 3WAVA 3KD8A 1HJKA 4LQYA 5KXAA 2W5WA 3E2DA 5K4PA 5TJ3A 4LRAA 1AJDA 1EI6A 1B8JA 1K7HA 1EW8A 3MK2A 1URAA 4GTWA 1O99A 3NKPA 1N2KA 2XR9A 4LR9A 3TWZA 4CYRA 1SHQA 5EGEA 4LREA 4UOPA 2W8DA 4B56A 4YR1A 1KHKA 2QZUA 5AJ9A 5LRMA 5DLWA 4LR7A 3WAYA 2RH6A 5INHA 4KM4A 2ZKTA 3UN2A 1E3CP 4LR2A 2GA3A 2ANHA 1N2LA 4LRDA 4MIVA 4ZGAA 1E1ZP 4LRCA 5DLTA 2IUCA 3IGZB 4CXSA 2W5VA 2W5XA 4CXKA 2IFYA 1ELZA 2IUCB 1ALIA 4FDJA 1Y6VA 3DYCA 3BDFA 2W5TA 1SHNA 3T00A 1KH4A 3SZZA 3NKNA 2GSOA 2VQRA 3UN3A 1KHLA 2W5QA 4LR8A 3BDGA 5GRRA 5LIAA 2W8SA 1KHNA 1KH9A 2W5SA 1KH7A 1ANJA 3UNYA 3BDGB 3MK0A 1ED8A 3IDDA 1Y7AA 3TX0A 4CYSA 5L0BA 4NWXA 1KHJA 1ZEBA 1AJCA 3B5QA 3WAXA 5C66A 1ALJA 4KJDA 1P49A 4ZG6A 2GLQA 1FSUA 1KH5A 4KAYA 1ALKA 1O98A 4MY4A 4UORA 1ZEDA 3IGYB 4GTYA 4ZG7A 5IJSA 4KJGA 1EQJA 1E2SP 4KAVA 1ZEFA 2X98A 3M8YA 4CXUA 3Q3QA 3WBHA 3CMRA 3UN5A 5EGHA 5DLVA 5HRTA 4UOOA 1ELXA 1ALHA 4UPHA 2GSUA 5L0KA 4TN0A 5LRNA 3BDHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UO0 A;  4UPI A;  1EW2 A;  4GTZ A;  4QAX A;  1E33 P;  4LRF A;  3M7V A;  5IJQ A;  3M8W A;  3NKQ A;  3NKR A;  1ELY A;  3M8Z A;  3NVL A;  5L0E A;  1URB A;  5GOV A;  4UPK A;  5LQQ A;  1AJB A;  4FDI A;  3SZY A;  4ZG9 A;  3T02 A;  3OT9 A;  3WAW A;  4LRB A;  3DPC A;  3LXQ A;  4UPL A;  1ANI A;  3NKO A;  3TG0 A;  2GSN A;  1EJJ A;  2G9Y A;  1HDH A;  1AJA A;  3ED4 A;  2W5R A;  3A52 A;  1EW9 A;  3NKM A;  4N7T A;  4NWJ A;  3MK1 A;  1AUK A;  2XRG A;  4GTX A;  1HQA A;  4MHX A;  2D1G A;  1ED9 A;  3T01 A;  3WAV A;  3KD8 A;  1HJK A;  4LQY A;  5KXA A;  2W5W A;  3E2D A;  5K4P A;  5TJ3 A;  4LRA A;  1AJD A;  1EI6 A;  1B8J A;  1K7H A;  1EW8 A;  3MK2 A;  1URA A;  4GTW A;  1O99 A;  3NKP A;  1N2K A;  2XR9 A;  4LR9 A;  3TWZ A;  4CYR A;  1SHQ A;  5EGE A;  4LRE A;  4UOP A;  2W8D A;  4B56 A;  4YR1 A;  1KHK A;  2QZU A;  5AJ9 A;  5LRM A;  5DLW A;  4LR7 A;  3WAY A;  2RH6 A;  5INH A;  4KM4 A;  2ZKT A;  3UN2 A;  1E3C P;  4LR2 A;  2GA3 A;  2ANH A;  1N2L A;  4LRD A;  4MIV A;  4ZGA A;  1E1Z P;  4LRC A;  5DLT A;  2IUC A;  3IGZ B;  4CXS A;  2W5V A;  2W5X A;  4CXK A;  2IFY A;  1ELZ A;  2IUC B;  1ALI A;  4FDJ A;  1Y6V A;  3DYC A;  3BDF A;  2W5T A;  1SHN A;  3T00 A;  1KH4 A;  3SZZ A;  3NKN A;  2GSO A;  2VQR A;  3UN3 A;  1KHL A;  2W5Q A;  4LR8 A;  3BDG A;  5GRR A;  5LIA A;  2W8S A;  1KHN A;  1KH9 A;  2W5S A;  1KH7 A;  1ANJ A;  3UNY A;  3BDG B;  3MK0 A;  1ED8 A;  3IDD A;  1Y7A A;  3TX0 A;  4CYS A;  5L0B A;  4NWX A;  1KHJ A;  1ZEB A;  1AJC A;  3B5Q A;  3WAX A;  5C66 A;  1ALJ A;  4KJD A;  1P49 A;  4ZG6 A;  2GLQ A;  1FSU A;  1KH5 A;  4KAY A;  1ALK A;  1O98 A;  4MY4 A;  4UOR A;  1ZED A;  3IGY B;  4GTY A;  4ZG7 A;  5IJS A;  4KJG A;  1EQJ A;  1E2S P;  4KAV A;  1ZEF A;  2X98 A;  3M8Y A;  4CXU A;  3Q3Q A;  3WBH A;  3CMR A;  3UN5 A;  5EGH A;  5DLV A;  5HRT A;  4UOO A;  1ELX A;  1ALH A;  4UPH A;  2GSU A;  5L0K A;  4TN0 A;  5LRN A;  3BDH A; 
#chains in the Genus database with same CATH topology
 3UO0 A;  4UPI A;  1EW2 A;  4GTZ A;  4QAX A;  1E33 P;  4LRF A;  3M7V A;  5IJQ A;  3M8W A;  3NKQ A;  3NKR A;  1ELY A;  3M8Z A;  3NVL A;  5L0E A;  1URB A;  5GOV A;  4UPK A;  5LQQ A;  1AJB A;  4FDI A;  3SZY A;  4ZG9 A;  3T02 A;  3OT9 A;  3WAW A;  4LRB A;  3DPC A;  3LXQ A;  4UPL A;  1ANI A;  3NKO A;  3TG0 A;  2GSN A;  1EJJ A;  2G9Y A;  1HDH A;  1AJA A;  3ED4 A;  2W5R A;  3A52 A;  1EW9 A;  3NKM A;  4N7T A;  4NWJ A;  3MK1 A;  1AUK A;  2XRG A;  4GTX A;  1HQA A;  4MHX A;  2D1G A;  1ED9 A;  3T01 A;  3WAV A;  3KD8 A;  1HJK A;  4LQY A;  5KXA A;  2W5W A;  3E2D A;  5K4P A;  5TJ3 A;  4LRA A;  1AJD A;  1EI6 A;  1B8J A;  1K7H A;  1EW8 A;  3MK2 A;  1URA A;  4GTW A;  1O99 A;  3NKP A;  1N2K A;  2XR9 A;  4LR9 A;  3TWZ A;  4CYR A;  1SHQ A;  5EGE A;  4LRE A;  4UOP A;  2W8D A;  4B56 A;  4YR1 A;  1KHK A;  2QZU A;  5AJ9 A;  5LRM A;  5DLW A;  4LR7 A;  3WAY A;  2RH6 A;  5INH A;  4KM4 A;  2ZKT A;  3UN2 A;  1E3C P;  4LR2 A;  2GA3 A;  2ANH A;  1N2L A;  4LRD A;  4MIV A;  4ZGA A;  1E1Z P;  4LRC A;  5DLT A;  2IUC A;  3IGZ B;  4CXS A;  2W5V A;  2W5X A;  4CXK A;  2IFY A;  1ELZ A;  2IUC B;  1ALI A;  4FDJ A;  1Y6V A;  3DYC A;  3BDF A;  2W5T A;  1SHN A;  3T00 A;  1KH4 A;  3SZZ A;  3NKN A;  2GSO A;  2VQR A;  3UN3 A;  1KHL A;  2W5Q A;  4LR8 A;  3BDG A;  5GRR A;  5LIA A;  2W8S A;  1KHN A;  1KH9 A;  2W5S A;  1KH7 A;  1ANJ A;  3UNY A;  3BDG B;  3MK0 A;  1ED8 A;  3IDD A;  1Y7A A;  3TX0 A;  4CYS A;  5L0B A;  4NWX A;  1KHJ A;  1ZEB A;  1AJC A;  3B5Q A;  3WAX A;  5C66 A;  1ALJ A;  4KJD A;  1P49 A;  4ZG6 A;  2GLQ A;  1FSU A;  1KH5 A;  4KAY A;  1ALK A;  1O98 A;  4MY4 A;  4UOR A;  1ZED A;  3IGY B;  4GTY A;  4ZG7 A;  5IJS A;  4KJG A;  1EQJ A;  1E2S P;  4KAV A;  1ZEF A;  2X98 A;  3M8Y A;  4CXU A;  3Q3Q A;  3WBH A;  3CMR A;  3UN5 A;  5EGH A;  5DLV A;  5HRT A;  4UOO A;  1ELX A;  1ALH A;  4UPH A;  2GSU A;  5L0K A;  4TN0 A;  5LRN A;  3BDH A; 
#chains in the Genus database with same CATH homology
 3UO0 A;  4UPI A;  1EW2 A;  4GTZ A;  4QAX A;  1E33 P;  4LRF A;  3M7V A;  5IJQ A;  3M8W A;  3NKQ A;  3NKR A;  1ELY A;  3M8Z A;  3NVL A;  5L0E A;  1URB A;  5GOV A;  4UPK A;  5LQQ A;  1AJB A;  4FDI A;  3SZY A;  4ZG9 A;  3T02 A;  3OT9 A;  3WAW A;  4LRB A;  3DPC A;  3LXQ A;  4UPL A;  1ANI A;  3NKO A;  3TG0 A;  2GSN A;  1EJJ A;  2G9Y A;  1HDH A;  1AJA A;  3ED4 A;  2W5R A;  3A52 A;  1EW9 A;  3NKM A;  4N7T A;  4NWJ A;  3MK1 A;  1AUK A;  2XRG A;  4GTX A;  1HQA A;  4MHX A;  2D1G A;  1ED9 A;  3T01 A;  3WAV A;  3KD8 A;  1HJK A;  4LQY A;  5KXA A;  2W5W A;  3E2D A;  5K4P A;  5TJ3 A;  4LRA A;  1AJD A;  1EI6 A;  1B8J A;  1K7H A;  1EW8 A;  3MK2 A;  1URA A;  4GTW A;  1O99 A;  3NKP A;  1N2K A;  2XR9 A;  4LR9 A;  3TWZ A;  4CYR A;  1SHQ A;  5EGE A;  4LRE A;  4UOP A;  2W8D A;  4B56 A;  4YR1 A;  1KHK A;  2QZU A;  5AJ9 A;  5LRM A;  5DLW A;  4LR7 A;  3WAY A;  2RH6 A;  5INH A;  4KM4 A;  2ZKT A;  3UN2 A;  1E3C P;  4LR2 A;  2GA3 A;  2ANH A;  1N2L A;  4LRD A;  4MIV A;  4ZGA A;  1E1Z P;  4LRC A;  5DLT A;  2IUC A;  3IGZ B;  4CXS A;  2W5V A;  2W5X A;  4CXK A;  2IFY A;  1ELZ A;  2IUC B;  1ALI A;  4FDJ A;  1Y6V A;  3DYC A;  3BDF A;  2W5T A;  1SHN A;  3T00 A;  1KH4 A;  3SZZ A;  3NKN A;  2GSO A;  2VQR A;  3UN3 A;  1KHL A;  2W5Q A;  4LR8 A;  3BDG A;  5GRR A;  5LIA A;  2W8S A;  1KHN A;  1KH9 A;  2W5S A;  1KH7 A;  1ANJ A;  3UNY A;  3BDG B;  3MK0 A;  1ED8 A;  3IDD A;  1Y7A A;  3TX0 A;  4CYS A;  5L0B A;  4NWX A;  1KHJ A;  1ZEB A;  1AJC A;  3B5Q A;  3WAX A;  5C66 A;  1ALJ A;  4KJD A;  1P49 A;  4ZG6 A;  2GLQ A;  1FSU A;  1KH5 A;  4KAY A;  1ALK A;  1O98 A;  4MY4 A;  4UOR A;  1ZED A;  3IGY B;  4GTY A;  4ZG7 A;  5IJS A;  4KJG A;  1EQJ A;  1E2S P;  4KAV A;  1ZEF A;  2X98 A;  3M8Y A;  4CXU A;  3Q3Q A;  3WBH A;  3CMR A;  3UN5 A;  5EGH A;  5DLV A;  5HRT A;  4UOO A;  1ELX A;  1ALH A;  4UPH A;  2GSU A;  5L0K A;  4TN0 A;  5LRN A;  3BDH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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