4KJDA

Ratintestinal ap expressed in e. coli
Total Genus 148
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
Knots found
sequence length
478
structure length
407
Chain Sequence
VEEENPVFWNQKAKEALDVAKKLQPIQTSAKNLILFLGDGMGVPTVTATRILKGQLGGHLGPETPLAMDHFPFTALSKTYNVDRQVPDAGTATAYLCGVKANYKTIGVSAAARFNQCNSTFGNEVFSVMHRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRDWYSDADMPSSALQEGCKDIATQLISNMDIDVILGGGRKFMFPKGTPDPEYPGDSDQSGVRLDSRNLVEEWLAKYQGTRYVWNREQLMQASQDPAVTRLMGLFEPTEMKYDVNRNASADPSLAEMTEVAVRLLSRNPQGFYLFVEGGRIDQGHTAYLALTEAVMFDSAIEKASQLTNEKDTLTLITADHSHVTLRHGGEDVAIFARGPQAHLVHGVQEQNYIAHVMAFAGCLEPYTDCGLAPPAD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (5-7)AH12 (324-344)TVIII1 (33-36)TI15 (346-349)S1 (35-41)TI14 (302-305)S8 (350-356)3H2 (70-73)TI1 (64-67)S2 (76-81)TI2 (84-87)TVIII2 (87-90)O1 (121-183)AH3 (93-101)TII2 (106-109)TIV2 (125-128)TII4 (124-127)AH5 (154-158)TI5 (158-161)3H3 (121-123)TI3 (113-116)TII3 (117-120)AH6 (176-181)AH4 (132-139)TVIII4 (196-199)S3 (142-150)TIV5 (270-273)EMPTYTI4 (150-153)S7 (306-312)AH7 (186-193)TI6 (165-168)TVIII3 (163-166)3H5 (221-223)AH8 (233-239)TI12 (259-262)S6 (264-268)S4 (198-202)TI7 (203-206)S5 (244-247)TIV3 (215-218)TIV4 (227-230)TI9 (205-208)TI8 (204-207)TII5 (209-212)TI10 (214-217)TII6 (241-244)AH10 (288-300)AH9 (250-258)3H6 (277-279)TI13 (281-284)TIV6 (282-285)AH11 (314-319)AH1 (9-25)AH2 (46-60)TIV1 (109-112)3H4 (171-173)TII1 (41-44)TI11 (217-220)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Rattus norvegicus
publication title Crystal structure of rat intestinal alkaline phosphatase - Role of crown domain in mammalian alkaline phosphatases.
pubmed doi rcsb
molecule keywords Intestinal-type alkaline phosphatase 1
total genus 148
structure length 407
sequence length 478
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2013-05-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kjdA00
1AJCA 1ZEDA 3NKNA 5TJ3A 1ALHA 2W5QA 1KHNA 3LXQA 3ED4A 5EGHA 1E1ZP 4ZG9A 1ALIA 2VQRA 1KH7A 5LIAA 1N2LA 4UPLA 3T01A 4LRDA 5DLVA 4UPHA 5HRTA 1AJBA 3WBHA 3UO0A 1P49A 5GOVA 2W5WA 3NKPA 2X98A 4UOPA 3IDDA 4GTWA 3NKQA 2GSOA 1HQAA 2W5RA 3OT9A 1ED9A 3SZYA 3UN3A 4LRCA 4GTYA 4YR1A 4B56A 1E33P 4LRBA 4UORA 1EW2A 5GRRA 1EQJA 1KHLA 1ELXA 4QAXA 5DLWA 1EW8A 5LQQA 5L0KA 4LRFA 3BDFA 4LRAA 4ZG7A 3NKMA 5EGEA 4CXKA 3WAVA 1B8JA 2GLQA 2IUCA 3UNYA 1AJDA 2GA3A 4LR2A 2W5SA 4KAVA 1SHQA 4GTXA 5IJQA 1ELZA 3BDGB 3SZZA 2W5TA 3Q3QA 3UN5A 1AJAA 3MK1A 1ED8A 2W5XA 1ALJA 1KH4A 3NVLA 4LQYA 5DLTA 2XR9A 3M8YA 4FDIA 4MY4A 1EW9A 4NWJA 3NKOA 3WAWA 2GSUA 1O99A 3BDGA 3M8ZA 3M8WA 4GTZA 1KHKA 1FSUA 2IUCB 3B5QA 4LR9A 3TX0A 3A52A 3TWZA 5C66A 1SHNA 5L0EA 1ZEBA 3UN2A 1ANJA 1KH5A 1URBA 3MK0A 3CMRA 1EJJA 1E2SP 1ZEFA 2G9YA 4CYSA 3NKRA 1AUKA 1E3CP 1KH9A 3WAXA 3KD8A 4UPKA 4NWXA 3MK2A 4KAYA 1ALKA 3TG0A 5IJSA 4FDJA 3DPCA 2D1GA 3M7VA 5KXAA 4ZG6A 2XRGA 1Y6VA 2W8SA 3DYCA 1Y7AA 4MIVA 1O98A 4ZGAA 5LRMA 4LR7A 4MHXA 3WAYA 2ZKTA 5LRNA 2GSNA 1ANIA 1K7HA 3IGZB 4KM4A 4KJDA 4LR8A 1URAA 3T00A 1KHJA 1EI6A 3BDHA 4CYRA 2W5VA 2ANHA 2IFYA 4UOOA 4TN0A 4KJGA 1N2KA 1HDHA 2W8DA 2QZUA 3IGYB 4N7TA 3T02A 4CXUA 3E2DA 5AJ9A 1ELYA 4CXSA 5L0BA 5K4PA 1HJKA 4LREA 4UPIA 2RH6A 5INHA
chains in the Genus database with same CATH superfamily
1AJCA 1ZEDA 3NKNA 5TJ3A 1ALHA 2W5QA 1KHNA 3LXQA 3ED4A 5EGHA 1E1ZP 4ZG9A 1ALIA 2VQRA 1KH7A 5LIAA 1N2LA 4UPLA 3T01A 4LRDA 5DLVA 4UPHA 5HRTA 1AJBA 3WBHA 3UO0A 1P49A 5GOVA 2W5WA 3NKPA 2X98A 4UOPA 3IDDA 4GTWA 3NKQA 2GSOA 1HQAA 2W5RA 3OT9A 1ED9A 3SZYA 3UN3A 4LRCA 4GTYA 4YR1A 4B56A 1E33P 4LRBA 4UORA 1EW2A 5GRRA 1EQJA 1KHLA 1ELXA 4QAXA 5DLWA 1EW8A 5LQQA 5L0KA 4LRFA 3BDFA 4LRAA 4ZG7A 3NKMA 5EGEA 4CXKA 3WAVA 1B8JA 2GLQA 2IUCA 3UNYA 1AJDA 2GA3A 4LR2A 2W5SA 4KAVA 1SHQA 4GTXA 5IJQA 1ELZA 3BDGB 3SZZA 2W5TA 3Q3QA 3UN5A 1AJAA 3MK1A 1ED8A 2W5XA 1ALJA 1KH4A 3NVLA 4LQYA 5DLTA 2XR9A 3M8YA 4FDIA 4MY4A 1EW9A 4NWJA 3NKOA 3WAWA 2GSUA 1O99A 3BDGA 3M8ZA 3M8WA 4GTZA 1KHKA 1FSUA 2IUCB 3B5QA 4LR9A 3TX0A 3A52A 3TWZA 5C66A 1SHNA 5L0EA 1ZEBA 3UN2A 1ANJA 1KH5A 1URBA 3MK0A 3CMRA 1EJJA 1E2SP 1ZEFA 2G9YA 4CYSA 3NKRA 1AUKA 1E3CP 1KH9A 3WAXA 3KD8A 4UPKA 4NWXA 3MK2A 4KAYA 1ALKA 3TG0A 5IJSA 4FDJA 3DPCA 2D1GA 3M7VA 5KXAA 4ZG6A 2XRGA 1Y6VA 2W8SA 3DYCA 1Y7AA 4MIVA 1O98A 4ZGAA 5LRMA 4LR7A 4MHXA 3WAYA 2ZKTA 5LRNA 2GSNA 1ANIA 1K7HA 3IGZB 4KM4A 4KJDA 4LR8A 1URAA 3T00A 1KHJA 1EI6A 3BDHA 4CYRA 2W5VA 2ANHA 2IFYA 4UOOA 4TN0A 4KJGA 1N2KA 1HDHA 2W8DA 2QZUA 3IGYB 4N7TA 3T02A 4CXUA 3E2DA 5AJ9A 1ELYA 4CXSA 5L0BA 5K4PA 1HJKA 4LREA 4UPIA 2RH6A 5INHA
chains in the Genus database with same CATH topology
1AJCA 1ZEDA 3NKNA 5TJ3A 1ALHA 2W5QA 1KHNA 3LXQA 3ED4A 5EGHA 1E1ZP 4ZG9A 1ALIA 2VQRA 1KH7A 5LIAA 1N2LA 4UPLA 3T01A 4LRDA 5DLVA 4UPHA 5HRTA 1AJBA 3WBHA 3UO0A 1P49A 5GOVA 2W5WA 3NKPA 2X98A 4UOPA 3IDDA 4GTWA 3NKQA 2GSOA 1HQAA 2W5RA 3OT9A 1ED9A 3SZYA 3UN3A 4LRCA 4GTYA 4YR1A 4B56A 1E33P 4LRBA 4UORA 1EW2A 5GRRA 1EQJA 1KHLA 1ELXA 4QAXA 5DLWA 1EW8A 5LQQA 5L0KA 4LRFA 3BDFA 4LRAA 4ZG7A 3NKMA 5EGEA 4CXKA 3WAVA 1B8JA 2GLQA 2IUCA 3UNYA 1AJDA 2GA3A 4LR2A 2W5SA 4KAVA 1SHQA 4GTXA 5IJQA 1ELZA 3BDGB 3SZZA 2W5TA 3Q3QA 3UN5A 1AJAA 3MK1A 1ED8A 2W5XA 1ALJA 1KH4A 3NVLA 4LQYA 5DLTA 2XR9A 3M8YA 4FDIA 4MY4A 1EW9A 4NWJA 3NKOA 3WAWA 2GSUA 1O99A 3BDGA 3M8ZA 3M8WA 4GTZA 1KHKA 1FSUA 2IUCB 3B5QA 4LR9A 3TX0A 3A52A 3TWZA 5C66A 1SHNA 5L0EA 1ZEBA 3UN2A 1ANJA 1KH5A 1URBA 3MK0A 3CMRA 1EJJA 1E2SP 1ZEFA 2G9YA 4CYSA 3NKRA 1AUKA 1E3CP 1KH9A 3WAXA 3KD8A 4UPKA 4NWXA 3MK2A 4KAYA 1ALKA 3TG0A 5IJSA 4FDJA 3DPCA 2D1GA 3M7VA 5KXAA 4ZG6A 2XRGA 1Y6VA 2W8SA 3DYCA 1Y7AA 4MIVA 1O98A 4ZGAA 5LRMA 4LR7A 4MHXA 3WAYA 2ZKTA 5LRNA 2GSNA 1ANIA 1K7HA 3IGZB 4KM4A 4KJDA 4LR8A 1URAA 3T00A 1KHJA 1EI6A 3BDHA 4CYRA 2W5VA 2ANHA 2IFYA 4UOOA 4TN0A 4KJGA 1N2KA 1HDHA 2W8DA 2QZUA 3IGYB 4N7TA 3T02A 4CXUA 3E2DA 5AJ9A 1ELYA 4CXSA 5L0BA 5K4PA 1HJKA 4LREA 4UPIA 2RH6A 5INHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AJC A;  1ZED A;  3NKN A;  5TJ3 A;  1ALH A;  2W5Q A;  1KHN A;  3LXQ A;  3ED4 A;  5EGH A;  1E1Z P;  4ZG9 A;  1ALI A;  2VQR A;  1KH7 A;  5LIA A;  1N2L A;  4UPL A;  3T01 A;  4LRD A;  5DLV A;  4UPH A;  5HRT A;  1AJB A;  3WBH A;  3UO0 A;  1P49 A;  5GOV A;  2W5W A;  3NKP A;  2X98 A;  4UOP A;  3IDD A;  4GTW A;  3NKQ A;  2GSO A;  1HQA A;  2W5R A;  3OT9 A;  1ED9 A;  3SZY A;  3UN3 A;  4LRC A;  4GTY A;  4YR1 A;  4B56 A;  1E33 P;  4LRB A;  4UOR A;  1EW2 A;  5GRR A;  1EQJ A;  1KHL A;  1ELX A;  4QAX A;  5DLW A;  1EW8 A;  5LQQ A;  5L0K A;  4LRF A;  3BDF A;  4LRA A;  4ZG7 A;  3NKM A;  5EGE A;  4CXK A;  3WAV A;  1B8J A;  2GLQ A;  2IUC A;  3UNY A;  1AJD A;  2GA3 A;  4LR2 A;  2W5S A;  4KAV A;  1SHQ A;  4GTX A;  5IJQ A;  1ELZ A;  3BDG B;  3SZZ A;  2W5T A;  3Q3Q A;  3UN5 A;  1AJA A;  3MK1 A;  1ED8 A;  2W5X A;  1ALJ A;  1KH4 A;  3NVL A;  4LQY A;  5DLT A;  2XR9 A;  3M8Y A;  4FDI A;  4MY4 A;  1EW9 A;  4NWJ A;  3NKO A;  3WAW A;  2GSU A;  1O99 A;  3BDG A;  3M8Z A;  3M8W A;  4GTZ A;  1KHK A;  1FSU A;  2IUC B;  3B5Q A;  4LR9 A;  3TX0 A;  3A52 A;  3TWZ A;  5C66 A;  1SHN A;  5L0E A;  1ZEB A;  3UN2 A;  1ANJ A;  1KH5 A;  1URB A;  3MK0 A;  3CMR A;  1EJJ A;  1E2S P;  1ZEF A;  2G9Y A;  4CYS A;  3NKR A;  1AUK A;  1E3C P;  1KH9 A;  3WAX A;  3KD8 A;  4UPK A;  4NWX A;  3MK2 A;  4KAY A;  1ALK A;  3TG0 A;  5IJS A;  4FDJ A;  3DPC A;  2D1G A;  3M7V A;  5KXA A;  4ZG6 A;  2XRG A;  1Y6V A;  2W8S A;  3DYC A;  1Y7A A;  4MIV A;  1O98 A;  4ZGA A;  5LRM A;  4LR7 A;  4MHX A;  3WAY A;  2ZKT A;  5LRN A;  2GSN A;  1ANI A;  1K7H A;  3IGZ B;  4KM4 A;  4KJD A;  4LR8 A;  1URA A;  3T00 A;  1KHJ A;  1EI6 A;  3BDH A;  4CYR A;  2W5V A;  2ANH A;  2IFY A;  4UOO A;  4TN0 A;  4KJG A;  1N2K A;  1HDH A;  2W8D A;  2QZU A;  3IGY B;  4N7T A;  3T02 A;  4CXU A;  3E2D A;  5AJ9 A;  1ELY A;  4CXS A;  5L0B A;  5K4P A;  1HJK A;  4LRE A;  4UPI A;  2RH6 A;  5INH A; 
#chains in the Genus database with same CATH topology
 1AJC A;  1ZED A;  3NKN A;  5TJ3 A;  1ALH A;  2W5Q A;  1KHN A;  3LXQ A;  3ED4 A;  5EGH A;  1E1Z P;  4ZG9 A;  1ALI A;  2VQR A;  1KH7 A;  5LIA A;  1N2L A;  4UPL A;  3T01 A;  4LRD A;  5DLV A;  4UPH A;  5HRT A;  1AJB A;  3WBH A;  3UO0 A;  1P49 A;  5GOV A;  2W5W A;  3NKP A;  2X98 A;  4UOP A;  3IDD A;  4GTW A;  3NKQ A;  2GSO A;  1HQA A;  2W5R A;  3OT9 A;  1ED9 A;  3SZY A;  3UN3 A;  4LRC A;  4GTY A;  4YR1 A;  4B56 A;  1E33 P;  4LRB A;  4UOR A;  1EW2 A;  5GRR A;  1EQJ A;  1KHL A;  1ELX A;  4QAX A;  5DLW A;  1EW8 A;  5LQQ A;  5L0K A;  4LRF A;  3BDF A;  4LRA A;  4ZG7 A;  3NKM A;  5EGE A;  4CXK A;  3WAV A;  1B8J A;  2GLQ A;  2IUC A;  3UNY A;  1AJD A;  2GA3 A;  4LR2 A;  2W5S A;  4KAV A;  1SHQ A;  4GTX A;  5IJQ A;  1ELZ A;  3BDG B;  3SZZ A;  2W5T A;  3Q3Q A;  3UN5 A;  1AJA A;  3MK1 A;  1ED8 A;  2W5X A;  1ALJ A;  1KH4 A;  3NVL A;  4LQY A;  5DLT A;  2XR9 A;  3M8Y A;  4FDI A;  4MY4 A;  1EW9 A;  4NWJ A;  3NKO A;  3WAW A;  2GSU A;  1O99 A;  3BDG A;  3M8Z A;  3M8W A;  4GTZ A;  1KHK A;  1FSU A;  2IUC B;  3B5Q A;  4LR9 A;  3TX0 A;  3A52 A;  3TWZ A;  5C66 A;  1SHN A;  5L0E A;  1ZEB A;  3UN2 A;  1ANJ A;  1KH5 A;  1URB A;  3MK0 A;  3CMR A;  1EJJ A;  1E2S P;  1ZEF A;  2G9Y A;  4CYS A;  3NKR A;  1AUK A;  1E3C P;  1KH9 A;  3WAX A;  3KD8 A;  4UPK A;  4NWX A;  3MK2 A;  4KAY A;  1ALK A;  3TG0 A;  5IJS A;  4FDJ A;  3DPC A;  2D1G A;  3M7V A;  5KXA A;  4ZG6 A;  2XRG A;  1Y6V A;  2W8S A;  3DYC A;  1Y7A A;  4MIV A;  1O98 A;  4ZGA A;  5LRM A;  4LR7 A;  4MHX A;  3WAY A;  2ZKT A;  5LRN A;  2GSN A;  1ANI A;  1K7H A;  3IGZ B;  4KM4 A;  4KJD A;  4LR8 A;  1URA A;  3T00 A;  1KHJ A;  1EI6 A;  3BDH A;  4CYR A;  2W5V A;  2ANH A;  2IFY A;  4UOO A;  4TN0 A;  4KJG A;  1N2K A;  1HDH A;  2W8D A;  2QZU A;  3IGY B;  4N7T A;  3T02 A;  4CXU A;  3E2D A;  5AJ9 A;  1ELY A;  4CXS A;  5L0B A;  5K4P A;  1HJK A;  4LRE A;  4UPI A;  2RH6 A;  5INH A; 
#chains in the Genus database with same CATH homology
 1AJC A;  1ZED A;  3NKN A;  5TJ3 A;  1ALH A;  2W5Q A;  1KHN A;  3LXQ A;  3ED4 A;  5EGH A;  1E1Z P;  4ZG9 A;  1ALI A;  2VQR A;  1KH7 A;  5LIA A;  1N2L A;  4UPL A;  3T01 A;  4LRD A;  5DLV A;  4UPH A;  5HRT A;  1AJB A;  3WBH A;  3UO0 A;  1P49 A;  5GOV A;  2W5W A;  3NKP A;  2X98 A;  4UOP A;  3IDD A;  4GTW A;  3NKQ A;  2GSO A;  1HQA A;  2W5R A;  3OT9 A;  1ED9 A;  3SZY A;  3UN3 A;  4LRC A;  4GTY A;  4YR1 A;  4B56 A;  1E33 P;  4LRB A;  4UOR A;  1EW2 A;  5GRR A;  1EQJ A;  1KHL A;  1ELX A;  4QAX A;  5DLW A;  1EW8 A;  5LQQ A;  5L0K A;  4LRF A;  3BDF A;  4LRA A;  4ZG7 A;  3NKM A;  5EGE A;  4CXK A;  3WAV A;  1B8J A;  2GLQ A;  2IUC A;  3UNY A;  1AJD A;  2GA3 A;  4LR2 A;  2W5S A;  4KAV A;  1SHQ A;  4GTX A;  5IJQ A;  1ELZ A;  3BDG B;  3SZZ A;  2W5T A;  3Q3Q A;  3UN5 A;  1AJA A;  3MK1 A;  1ED8 A;  2W5X A;  1ALJ A;  1KH4 A;  3NVL A;  4LQY A;  5DLT A;  2XR9 A;  3M8Y A;  4FDI A;  4MY4 A;  1EW9 A;  4NWJ A;  3NKO A;  3WAW A;  2GSU A;  1O99 A;  3BDG A;  3M8Z A;  3M8W A;  4GTZ A;  1KHK A;  1FSU A;  2IUC B;  3B5Q A;  4LR9 A;  3TX0 A;  3A52 A;  3TWZ A;  5C66 A;  1SHN A;  5L0E A;  1ZEB A;  3UN2 A;  1ANJ A;  1KH5 A;  1URB A;  3MK0 A;  3CMR A;  1EJJ A;  1E2S P;  1ZEF A;  2G9Y A;  4CYS A;  3NKR A;  1AUK A;  1E3C P;  1KH9 A;  3WAX A;  3KD8 A;  4UPK A;  4NWX A;  3MK2 A;  4KAY A;  1ALK A;  3TG0 A;  5IJS A;  4FDJ A;  3DPC A;  2D1G A;  3M7V A;  5KXA A;  4ZG6 A;  2XRG A;  1Y6V A;  2W8S A;  3DYC A;  1Y7A A;  4MIV A;  1O98 A;  4ZGA A;  5LRM A;  4LR7 A;  4MHX A;  3WAY A;  2ZKT A;  5LRN A;  2GSN A;  1ANI A;  1K7H A;  3IGZ B;  4KM4 A;  4KJD A;  4LR8 A;  1URA A;  3T00 A;  1KHJ A;  1EI6 A;  3BDH A;  4CYR A;  2W5V A;  2ANH A;  2IFY A;  4UOO A;  4TN0 A;  4KJG A;  1N2K A;  1HDH A;  2W8D A;  2QZU A;  3IGY B;  4N7T A;  3T02 A;  4CXU A;  3E2D A;  5AJ9 A;  1ELY A;  4CXS A;  5L0B A;  5K4P A;  1HJK A;  4LRE A;  4UPI A;  2RH6 A;  5INH A; 
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