4L69A

Rv2372c of mycobacterium tuberculosis is rsme like methyltransferse
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
Knots found
sequence length
247
structure length
244
Chain Sequence
b'VAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQGGLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSRWD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ribosomal RNA small subunit methyltransferase E
publication title The structure of Rv2372c identifies an RsmE-like methyltransferase from Mycobacterium tuberculosis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Transferase
total genus 66
structure length 244
sequence length 247
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.193: 16S rRNA (uracil(1498)-N(3))-methyltransferase.
pdb deposition date 2013-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 4l69A01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4l69A02
4YQAA 4PZKA 4YPXA 4FAKA 5CO4A 1TO0A 3IC6A 4YQDA 2Z0YA 1OY5A 2V3JA 4YQ8A 4KDZA 4YQ3A 2NWAA 4YQNA 3ONPA 1V6ZA 4YQRA 4JALA 3OIJA 3KNUA 4RG1A 3AI9X 2O3AA 4J3CA 2V3KA 4YQKA 4YQBA 5GMCA 4CNDA 3KTYA 4H3YA 3N4KA 1UAKA 4YQ6A 4YQ5A 1VH0A 4X3MA 4YQTA 4YQJA 3KW2A 3N4JA 1UALA 4MCDA 4KGNA 1UAJA 1J85A 4IG6A 4YQ9A 1O6DA 4L69A 2QWVA 4YVIA 1P9PA 4YVHA 5GM8A 4YQ7A 3NK6A 4YQLA 1VHKA 4X3LA 3NK7A 3O7BA 3OIIA 4YQ2A 4YVJA 3DCMX 1V2XA 4H3ZA 3KY7A 4MCBA 4YQCA 4YQ4A 1IPAA 3QUVA 5FAIA 4E8BA 5D9FA 4YQ0A 3GYQA 1NS5A 2EGVA 1UAMA 4YVKA 4YQSA 3AIAA 1GZ0A 5GMBA 1X7PA 2I6DA 4CNFA 2HA8A 4YQQA 4MCCA 3OINA 1NXZA 4YQGA 4YQOA 1VHYA 3ILKA 1ZJRA 1Z85A 1K3RA 3BBHA 3BBEA 3AXZA 4CNEA 2EGWA 4YQPA 3L8UA 1MXIA 4YQ1A 4CNGA 4YPZA 4XBOA 2CX8A 4YPWA 3IEFA 2YY8A 1X7OA 4JAKA 2QMMA 4YPYA 3BBDA 3E5YA 4YQIA 4YVGA
chains in the Genus database with same CATH superfamily
4YQAA 5GAHW 4PZKA 4YPXA 4FAKA 5CO4A 1TO0A 3IC6A 4YQDA 2Z0YA 1B75A 1OY5A 2V3JA 1O0CA 5HL7S 4V194 4JYZA 4YQ8A 2ZJRS 2RD2A 4FMWA 4KDZA 5GAGW 2NWAA 4YQ3A 4YQNA 3ONPA 3J7ZV 4U67S 3DLLS 1V6ZA 1FEUA 4YQRA 4JALA 3OIJA 3KNUA 4RG1A 3AI9X 5GADW 1DFUP 2O3AA 4J3CA 2V3KA 4YQKA 4YQBA 5GMCA 4CNDA 3KTYA 4H3YA 4P2BA 3N4KA 5BNZA 3X1LB 2G5DA 4H3SA 1UAKA 4WFBS 4YQ6A 4YQ5A 4WCES 1VH0A 3CF5S 4JWHA 4X3MA 4YQTA 1QTQA 4YQJA 3KW2A 3N4JA 3W2VB 1UALA 4MCDA 2PNWA 4WFNS 2ZJQS 4KGNA 1O0BA 1UAJA 5JVGS 1J85A 4IG6A 4YQ9A 4JXZA 1O6DA 4L69A 2ZJPS 1GTSA 3PIPS 1EUQA 2QWVA 4YVIA 1P9PA 1NYLA 5GAEW 4YVHA 5DM6S 5GM8A 4YQ7A 2PICA 3NK6A 4YQLA 1VHKA 4IOAS 2PI8A 3CZBA 4X3LA 3NK7A 3O7BA 3OIIA 4YQ2A 4YVJA 5JVHS 3DCMX 1V2XA 4H3ZA 3KY7A 1UDXA 4MCBA 4YQCA 4YQ4A 1QRSA 1IPAA 3QUVA 5FAIA 4E8BA 5D9FA 4WFAS 4YQ0A 4IOCS 4JWFA 3GYQA 1NS5A 2EGVA 1UAMA 4JWGA 4YVKA 4YQSA 3AIAA 1GZ0A 5GMBA 1X7PA 2I6DA 4CNFA 1ZJWA 3W2WB 3AIIA 2HA8A 1QRUA 4YQQA 4MCCA 3OINA 2GAEA 1NXZA 4YQGA 4JWJA 1VHYA 3ILKA 4YQOA 2G6GA 1ZJRA 2RE8A 1Z85A 1K3RA 3BBHA 3BBEA 3AXZA 4H4KA 4CNEA 2EGWA 5DM7S 1GTRA 4UY88 4YQPA 3L8UA 1MXIA 4YQ1A 4CNGA 4JXXA 4YPZA 2AE0X 3PIOS 4XBOA 5IZNA 2CX8A 4YPWA 3IEFA 2YY8A 2HZ7A 1X7OA 4JAKA 2QMMA 4YPYA 4IO9S 1QRTA 1D6KA 1EUYA 3BBDA 3E5YA 1EXDA 2PJJA 4WF9S 4YQIA 4YVGA
chains in the Genus database with same CATH topology
4YQAA 4PZKA 4YPXA 4FAKA 5CO4A 1TO0A 3IC6A 4YQDA 2Z0YA 1OY5A 2V3JA 4YQ8A 4FMWA 4KDZA 4YQ3A 2NWAA 4YQNA 3ONPA 1V6ZA 4YQRA 4JALA 3OIJA 3KNUA 4RG1A 3AI9X 2O3AA 4J3CA 2V3KA 4YQKA 4YQBA 5GMCA 4CNDA 3KTYA 4H3YA 3N4KA 1UAKA 4YQ6A 4YQ5A 1VH0A 4JWHA 4X3MA 4YQTA 4YQJA 3KW2A 3N4JA 1UALA 4MCDA 4KGNA 1UAJA 1J85A 4IG6A 4YQ9A 1O6DA 4L69A 2QWVA 4YVIA 1P9PA 4YVHA 5GM8A 4YQ7A 3NK6A 4YQLA 1VHKA 4X3LA 3NK7A 3O7BA 3OIIA 4YQ2A 4YVJA 3DCMX 1V2XA 4H3ZA 3KY7A 4MCBA 4YQCA 4YQ4A 1IPAA 3QUVA 5FAIA 4E8BA 5D9FA 4YQ0A 4JWFA 3GYQA 1NS5A 2EGVA 1UAMA 4JWGA 4YVKA 4YQSA 3AIAA 1GZ0A 5GMBA 1X7PA 2I6DA 4CNFA 2HA8A 4YQQA 4MCCA 3OINA 1NXZA 4YQGA 4JWJA 1VHYA 3ILKA 4YQOA 1ZJRA 1Z85A 1K3RA 3BBHA 3BBEA 3AXZA 4CNEA 2EGWA 4YQPA 3L8UA 1MXIA 4YQ1A 4CNGA 4YPZA 4XBOA 2CX8A 4YPWA 3IEFA 2YY8A 1X7OA 4JAKA 2QMMA 4YPYA 3BBDA 3E5YA 4YQIA 4YVGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQA A;  4PZK A;  4YPX A;  4FAK A;  5CO4 A;  1TO0 A;  3IC6 A;  4YQD A;  2Z0Y A;  1OY5 A;  2V3J A;  4YQ8 A;  4KDZ A;  4YQ3 A;  2NWA A;  4YQN A;  3ONP A;  1V6Z A;  4YQR A;  4JAL A;  3OIJ A;  3KNU A;  4RG1 A;  3AI9 X;  2O3A A;  4J3C A;  2V3K A;  4YQK A;  4YQB A;  5GMC A;  4CND A;  3KTY A;  4H3Y A;  3N4K A;  1UAK A;  4YQ6 A;  4YQ5 A;  1VH0 A;  4X3M A;  4YQT A;  4YQJ A;  3KW2 A;  3N4J A;  1UAL A;  4MCD A;  4KGN A;  1UAJ A;  1J85 A;  4IG6 A;  4YQ9 A;  1O6D A;  4L69 A;  2QWV A;  4YVI A;  1P9P A;  4YVH A;  5GM8 A;  4YQ7 A;  3NK6 A;  4YQL A;  1VHK A;  4X3L A;  3NK7 A;  3O7B A;  3OII A;  4YQ2 A;  4YVJ A;  3DCM X;  1V2X A;  4H3Z A;  3KY7 A;  4MCB A;  4YQC A;  4YQ4 A;  1IPA A;  3QUV A;  5FAI A;  4E8B A;  5D9F A;  4YQ0 A;  3GYQ A;  1NS5 A;  2EGV A;  1UAM A;  4YVK A;  4YQS A;  3AIA A;  1GZ0 A;  5GMB A;  1X7P A;  2I6D A;  4CNF A;  2HA8 A;  4YQQ A;  4MCC A;  3OIN A;  1NXZ A;  4YQG A;  4YQO A;  1VHY A;  3ILK A;  1ZJR A;  1Z85 A;  1K3R A;  3BBH A;  3BBE A;  3AXZ A;  4CNE A;  2EGW A;  4YQP A;  3L8U A;  1MXI A;  4YQ1 A;  4CNG A;  4YPZ A;  4XBO A;  2CX8 A;  4YPW A;  3IEF A;  2YY8 A;  1X7O A;  4JAK A;  2QMM A;  4YPY A;  3BBD A;  3E5Y A;  4YQI A;  4YVG A; 
#chains in the Genus database with same CATH topology
 4YQA A;  5GAH W;  4PZK A;  4YPX A;  4FAK A;  5CO4 A;  1TO0 A;  3IC6 A;  4YQD A;  2Z0Y A;  1B75 A;  1OY5 A;  2V3J A;  1O0C A;  5HL7 S;  4V19 4;  4JYZ A;  4YQ8 A;  2ZJR S;  2RD2 A;  4FMW A;  4KDZ A;  5GAG W;  2NWA A;  4YQ3 A;  4YQN A;  3ONP A;  3J7Z V;  4U67 S;  3DLL S;  1V6Z A;  1FEU A;  4YQR A;  4JAL A;  3OIJ A;  3KNU A;  4RG1 A;  3AI9 X;  5GAD W;  1DFU P;  2O3A A;  4J3C A;  2V3K A;  4YQK A;  4YQB A;  5GMC A;  4CND A;  3KTY A;  4H3Y A;  4P2B A;  3N4K A;  5BNZ A;  3X1L B;  2G5D A;  4H3S A;  1UAK A;  4WFB S;  4YQ6 A;  4YQ5 A;  4WCE S;  1VH0 A;  3CF5 S;  4JWH A;  4X3M A;  4YQT A;  1QTQ A;  4YQJ A;  3KW2 A;  3N4J A;  3W2V B;  1UAL A;  4MCD A;  2PNW A;  4WFN S;  2ZJQ S;  4KGN A;  1O0B A;  1UAJ A;  5JVG S;  1J85 A;  4IG6 A;  4YQ9 A;  4JXZ A;  1O6D A;  4L69 A;  2ZJP S;  1GTS A;  3PIP S;  1EUQ A;  2QWV A;  4YVI A;  1P9P A;  1NYL A;  5GAE W;  4YVH A;  5DM6 S;  5GM8 A;  4YQ7 A;  2PIC A;  3NK6 A;  4YQL A;  1VHK A;  4IOA S;  2PI8 A;  3CZB A;  4X3L A;  3NK7 A;  3O7B A;  3OII A;  4YQ2 A;  4YVJ A;  5JVH S;  3DCM X;  1V2X A;  4H3Z A;  3KY7 A;  1UDX A;  4MCB A;  4YQC A;  4YQ4 A;  1QRS A;  1IPA A;  3QUV A;  5FAI A;  4E8B A;  5D9F A;  4WFA S;  4YQ0 A;  4IOC S;  4JWF A;  3GYQ A;  1NS5 A;  2EGV A;  1UAM A;  4JWG A;  4YVK A;  4YQS A;  3AIA A;  1GZ0 A;  5GMB A;  1X7P A;  2I6D A;  4CNF A;  1ZJW A;  3W2W B;  3AII A;  2HA8 A;  1QRU A;  4YQQ A;  4MCC A;  3OIN A;  2GAE A;  1NXZ A;  4YQG A;  4JWJ A;  1VHY A;  3ILK A;  4YQO A;  2G6G A;  1ZJR A;  2RE8 A;  1Z85 A;  1K3R A;  3BBH A;  3BBE A;  3AXZ A;  4H4K A;  4CNE A;  2EGW A;  5DM7 S;  1GTR A;  4UY8 8;  4YQP A;  3L8U A;  1MXI A;  4YQ1 A;  4CNG A;  4JXX A;  4YPZ A;  2AE0 X;  3PIO S;  4XBO A;  5IZN A;  2CX8 A;  4YPW A;  3IEF A;  2YY8 A;  2HZ7 A;  1X7O A;  4JAK A;  2QMM A;  4YPY A;  4IO9 S;  1QRT A;  1D6K A;  1EUY A;  3BBD A;  3E5Y A;  1EXD A;  2PJJ A;  4WF9 S;  4YQI A;  4YVG A; 
#chains in the Genus database with same CATH homology
 4YQA A;  4PZK A;  4YPX A;  4FAK A;  5CO4 A;  1TO0 A;  3IC6 A;  4YQD A;  2Z0Y A;  1OY5 A;  2V3J A;  4YQ8 A;  4FMW A;  4KDZ A;  4YQ3 A;  2NWA A;  4YQN A;  3ONP A;  1V6Z A;  4YQR A;  4JAL A;  3OIJ A;  3KNU A;  4RG1 A;  3AI9 X;  2O3A A;  4J3C A;  2V3K A;  4YQK A;  4YQB A;  5GMC A;  4CND A;  3KTY A;  4H3Y A;  3N4K A;  1UAK A;  4YQ6 A;  4YQ5 A;  1VH0 A;  4JWH A;  4X3M A;  4YQT A;  4YQJ A;  3KW2 A;  3N4J A;  1UAL A;  4MCD A;  4KGN A;  1UAJ A;  1J85 A;  4IG6 A;  4YQ9 A;  1O6D A;  4L69 A;  2QWV A;  4YVI A;  1P9P A;  4YVH A;  5GM8 A;  4YQ7 A;  3NK6 A;  4YQL A;  1VHK A;  4X3L A;  3NK7 A;  3O7B A;  3OII A;  4YQ2 A;  4YVJ A;  3DCM X;  1V2X A;  4H3Z A;  3KY7 A;  4MCB A;  4YQC A;  4YQ4 A;  1IPA A;  3QUV A;  5FAI A;  4E8B A;  5D9F A;  4YQ0 A;  4JWF A;  3GYQ A;  1NS5 A;  2EGV A;  1UAM A;  4JWG A;  4YVK A;  4YQS A;  3AIA A;  1GZ0 A;  5GMB A;  1X7P A;  2I6D A;  4CNF A;  2HA8 A;  4YQQ A;  4MCC A;  3OIN A;  1NXZ A;  4YQG A;  4JWJ A;  1VHY A;  3ILK A;  4YQO A;  1ZJR A;  1Z85 A;  1K3R A;  3BBH A;  3BBE A;  3AXZ A;  4CNE A;  2EGW A;  4YQP A;  3L8U A;  1MXI A;  4YQ1 A;  4CNG A;  4YPZ A;  4XBO A;  2CX8 A;  4YPW A;  3IEF A;  2YY8 A;  1X7O A;  4JAK A;  2QMM A;  4YPY A;  3BBD A;  3E5Y A;  4YQI A;  4YVG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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