1J3LA

Structure of the rna-processing inhibitor rraa from thermus thermophilis
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
164
structure length
164
Chain Sequence
MEARTTDLSDLYPEGEALPMVFKSFGGRARFAGRVRTLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNLARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLLLPEPPSGVRSGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the RNA-processing inhibitor RraA from Thermus thermophilis.
pubmed doi rcsb
molecule tags Transferase
source organism Thermus thermophilus
molecule keywords Demethylmenaquinone Methyltransferase
total genus 43
structure length 164
sequence length 164
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 1j3lA00
1VI4A 3NOJA 2PCNA 2YJTA 2YJVA 1J3LA 3C8OA 1NXJA 1Q5XA 3K4IA
chains in the Genus database with same CATH superfamily
2JBJA 1ZL0A 4C9RA 4OC5A 3FF3A 4J0NA 2HWGA 4NGMA 4C8PA 4C9AA 3KASA 4NGTA 3D7GA 4OC3A 4H1HA 1C30B 2PVWA 4NGPA 4P4DA 3NOJA 3TLCA 4OC2A 3IIBA 5D29A 4TJXA 4P44A 4MCRA 4P4EA 3BHXA 1KBLA 1J3LA 3TLAA 4C8UA 1VI4A 2MP0A 2C6GA 2EK9A 3D7FA 2AUNA 3D7HA 1JDEA 3EZEA 1ZRSA 3BI0A 1Q5XA 4IIXA 1A9XB 2E28A 4LQGA 3S9NA 5FD8A 2AUMA 3SJXA 4P4IA 3C8OA 4P4BA 2D0PA 3GJZA 4X3RA 4P4JA 1Z8LA 1VBGA 2D0OA 4M8DA 1WVMA 2GP4A 3KRVA 3T0TA 4INJA 4OMEA 3SJFA 4NGRA 4OC0A 5JVLA 3EZBA 4C84A 4C99A 4COGA 4C8TA 2DIKA 3IWWA 1KEEB 3K4IA 4YN3A 2EZBA 4MJXA 1CS0B 4CDJA 1VBHA 1CX8A 1ZYMA 2C6PA 3SJEA 2PCNA 2YJTA 2OOTA 1JDBC 4IIYA 1R61A 3TLEA 2XEGA 2OR4A 2EZCA 1M6VB 3SJGA 2FM4A 4C85A 4C9VA 4COBA 3EZAA 2HROA 3K9TA 5K99A 4JZ0A 1EZAA 4MCPA 4MCQA 3S9LA 3FECA 4C8CA 4KNGE 3T05A 3VTAA 4C9UA 1CE8B 2XEIA 1NBWA 3I6SA 4C8AA 1V6CA 2EK8A 1XF1A 4CDKA 5IB9A 3I74A 4MI1A 5F5XA 4OC4A 3BI1A 4NGNA 4NGQA 3D7DA 5F09A 4W9YA 4JVOA 4EYSA 1NXJA 2OLSA 1C3OB 2B0AA 2CIJA 3TLYA 1DE4C 2R82A 4P4FA 4C9EA 2C6CA 5JYBA 1T36B 3FEDA 2X0SA 2XEJA 2YJVA 4P45A 2EZAA 3FEEA 2XEFA 3BXMA 4CZ1A 3EIFA 4TWEA 4CO9A 4TJVA 5F1YA 4OC1A 4E5SA 2HI6A 1GGOA 3U1BA 4JYWA 2PVVA 4C86A 3TLGB 1DIKA 4E94A 2C5QA 5ELYA 1EZBA 3T5MA 3TLZA 1Y9ZA 3ICUA 5F9MA 4C8FA 3SR3A 3RBUA 3TLGA 3TYXA 4NGSA 1KC7A 3TLBA 3S9MA 1BXRB 4MCSA 3T07A 3G23A 2JBKA 5IR2A
chains in the Genus database with same CATH topology
1VI4A 3NOJA 2PCNA 2YJTA 2YJVA 1J3LA 3C8OA 1NXJA 1Q5XA 3K4IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VI4 A;  3NOJ A;  2PCN A;  2YJT A;  2YJV A;  1J3L A;  3C8O A;  1NXJ A;  1Q5X A;  3K4I A; 
#chains in the Genus database with same CATH topology
 2JBJ A;  1ZL0 A;  4C9R A;  4OC5 A;  3FF3 A;  4J0N A;  2HWG A;  4NGM A;  4C8P A;  4C9A A;  3KAS A;  4NGT A;  3D7G A;  4OC3 A;  4H1H A;  1C30 B;  2PVW A;  4NGP A;  4P4D A;  3NOJ A;  3TLC A;  4OC2 A;  3IIB A;  5D29 A;  4TJX A;  4P44 A;  4MCR A;  4P4E A;  3BHX A;  1KBL A;  1J3L A;  3TLA A;  4C8U A;  1VI4 A;  2MP0 A;  2C6G A;  2EK9 A;  3D7F A;  2AUN A;  3D7H A;  1JDE A;  3EZE A;  1ZRS A;  3BI0 A;  1Q5X A;  4IIX A;  1A9X B;  2E28 A;  4LQG A;  3S9N A;  5FD8 A;  2AUM A;  3SJX A;  4P4I A;  3C8O A;  4P4B A;  2D0P A;  3GJZ A;  4X3R A;  4P4J A;  1Z8L A;  1VBG A;  2D0O A;  4M8D A;  1WVM A;  2GP4 A;  3KRV A;  3T0T A;  4INJ A;  4OME A;  3SJF A;  4NGR A;  4OC0 A;  5JVL A;  3EZB A;  4C84 A;  4C99 A;  4COG A;  4C8T A;  2DIK A;  3IWW A;  1KEE B;  3K4I A;  4YN3 A;  2EZB A;  4MJX A;  1CS0 B;  4CDJ A;  1VBH A;  1CX8 A;  1ZYM A;  2C6P A;  3SJE A;  2PCN A;  2YJT A;  2OOT A;  1JDB C;  4IIY A;  1R61 A;  3TLE A;  2XEG A;  2OR4 A;  2EZC A;  1M6V B;  3SJG A;  2FM4 A;  4C85 A;  4C9V A;  4COB A;  3EZA A;  2HRO A;  3K9T A;  5K99 A;  4JZ0 A;  1EZA A;  4MCP A;  4MCQ A;  3S9L A;  3FEC A;  4C8C A;  4KNG E;  3T05 A;  3VTA A;  4C9U A;  1CE8 B;  2XEI A;  1NBW A;  3I6S A;  4C8A A;  1V6C A;  2EK8 A;  1XF1 A;  4CDK A;  5IB9 A;  3I74 A;  4MI1 A;  5F5X A;  4OC4 A;  3BI1 A;  4NGN A;  4NGQ A;  3D7D A;  5F09 A;  4W9Y A;  4JVO A;  4EYS A;  1NXJ A;  2OLS A;  1C3O B;  2B0A A;  2CIJ A;  3TLY A;  1DE4 C;  2R82 A;  4P4F A;  4C9E A;  2C6C A;  5JYB A;  1T36 B;  3FED A;  2X0S A;  2XEJ A;  2YJV A;  4P45 A;  2EZA A;  3FEE A;  2XEF A;  3BXM A;  4CZ1 A;  3EIF A;  4TWE A;  4CO9 A;  4TJV A;  5F1Y A;  4OC1 A;  4E5S A;  2HI6 A;  1GGO A;  3U1B A;  4JYW A;  2PVV A;  4C86 A;  3TLG B;  1DIK A;  4E94 A;  2C5Q A;  5ELY A;  1EZB A;  3T5M A;  3TLZ A;  1Y9Z A;  3ICU A;  5F9M A;  4C8F A;  3SR3 A;  3RBU A;  3TLG A;  3TYX A;  4NGS A;  1KC7 A;  3TLB A;  3S9M A;  1BXR B;  4MCS A;  3T07 A;  3G23 A;  2JBK A;  5IR2 A; 
#chains in the Genus database with same CATH homology
 1VI4 A;  3NOJ A;  2PCN A;  2YJT A;  2YJV A;  1J3L A;  3C8O A;  1NXJ A;  1Q5X A;  3K4I A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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