2PCNA

Crystal structure of s-adenosylmethionine: 2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus hta426
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
161
structure length
161
Chain Sequence
MKTADLCDQFLDELQVCELPFQSYGGKRMFSGPIATVDVFEDNVLVREALETVPPGTVLVVDGKGSRRVALLGDRLAQIACERGLAGVIIHGCIRDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGGVRWEPGAYVYADADGVVVANKDLLAKNG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords S-adenosylmethionine:2-demethylmenaquinone methyltransferase
publication title Crystal structure of S-adenosylmethionine:2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426
rcsb
source organism Geobacillus kaustophilus
total genus 45
structure length 161
sequence length 161
ec nomenclature ec 2.1.1.-:
pdb deposition date 2007-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 2pcnA00
2PCNA 1J3LA 3K4IA 2YJVA 3C8OA 1VI4A 3NOJA 1Q5XA 1NXJA 2YJTA
chains in the Genus database with same CATH superfamily
4X3RA 4YN3A 4OC2A 3D7GA 1JDBC 3KASA 4P4IA 3TLBA 1KBLA 4P4EA 3SJGA 2FM4A 2C6CA 1J3LA 5IR2A 3TLZA 1CE8B 4P44A 1DIKA 3EIFA 3IWWA 4MCRA 4KNGE 4JYWA 5F09A 2XEFA 3S9LA 4CZ1A 3G23A 4E5SA 3EZEA 3IIBA 1CS0B 2PCNA 2B0AA 3T07A 4P45A 3S9NA 3TYXA 2D0PA 2EZAA 2JBKA 3K9TA 5F1YA 4C9AA 4OC4A 1ZRSA 2YJTA 3I6SA 4OC5A 4H1HA 3K4IA 3SJEA 4MCPA 1VI4A 4INJA 2PVVA 4IIXA 4JZ0A 2X0SA 3SJFA 4MCSA 4C9VA 3EZAA 1BXRB 2C5QA 4NGQA 2OLSA 2HI6A 3T5MA 1C30B 2JBJA 3BHXA 1VBGA 4C9EA 4TJXA 2PVWA 2DIKA 1CX8A 3RBUA 4C8TA 2C6GA 3SJXA 5D29A 1EZAA 2HROA 2HWGA 4TJVA 5F9MA 4IIYA 5ELYA 2AUMA 2R82A 3TLCA 2YJVA 4COBA 4C84A 2MP0A 4M8DA 4EYSA 1EZBA 1NBWA 3I74A 4JVOA 3TLEA 3BXMA 4C8UA 4P4FA 1ZL0A 5JVLA 3EZBA 4MI1A 4LQGA 4E94A 4NGPA 5K99A 3D7DA 2OOTA 2OR4A 3T05A 1ZYMA 3TLGB 1DE4C 2C6PA 3D7FA 3SR3A 4C8AA 4J0NA 2E28A 4OC3A 4CDJA 4P4JA 1A9XB 1M6VB 4NGTA 1Q5XA 1R61A 2EK9A 3GJZA 4TWEA 4C9UA 1Y9ZA 2CIJA 3FECA 3T0TA 3D7HA 4OMEA 1WVMA 3TLGA 4C85A 5IB9A 3ICUA 3TLYA 5JYBA 2AUNA 4P4BA 4NGRA 1T36B 4CDKA 4MJXA 3FF3A 4P4DA 4C8FA 1JDEA 1KEEB 3BI1A 1VBHA 4C9RA 2XEGA 4NGNA 4CO9A 2XEJA 3KRVA 3U1BA 3NOJA 3FEDA 1KC7A 5F5XA 4C86A 4C8CA 4W9YA 1GGOA 4MCQA 3BI0A 5FD8A 4NGSA 3VTAA 3S9MA 4C99A 2GP4A 4NGMA 4OC0A 1NXJA 1XF1A 2EK8A 2D0OA 1V6CA 3C8OA 2EZBA 4COGA 3FEEA 3TLAA 1C3OB 1Z8LA 2XEIA 4OC1A 4C8PA 2EZCA
chains in the Genus database with same CATH topology
2PCNA 1J3LA 3K4IA 2YJVA 3C8OA 1VI4A 3NOJA 1Q5XA 1NXJA 2YJTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCN A;  1J3L A;  3K4I A;  2YJV A;  3C8O A;  1VI4 A;  3NOJ A;  1Q5X A;  1NXJ A;  2YJT A; 
#chains in the Genus database with same CATH topology
 4X3R A;  4YN3 A;  4OC2 A;  3D7G A;  1JDB C;  3KAS A;  4P4I A;  3TLB A;  1KBL A;  4P4E A;  3SJG A;  2FM4 A;  2C6C A;  1J3L A;  5IR2 A;  3TLZ A;  1CE8 B;  4P44 A;  1DIK A;  3EIF A;  3IWW A;  4MCR A;  4KNG E;  4JYW A;  5F09 A;  2XEF A;  3S9L A;  4CZ1 A;  3G23 A;  4E5S A;  3EZE A;  3IIB A;  1CS0 B;  2PCN A;  2B0A A;  3T07 A;  4P45 A;  3S9N A;  3TYX A;  2D0P A;  2EZA A;  2JBK A;  3K9T A;  5F1Y A;  4C9A A;  4OC4 A;  1ZRS A;  2YJT A;  3I6S A;  4OC5 A;  4H1H A;  3K4I A;  3SJE A;  4MCP A;  1VI4 A;  4INJ A;  2PVV A;  4IIX A;  4JZ0 A;  2X0S A;  3SJF A;  4MCS A;  4C9V A;  3EZA A;  1BXR B;  2C5Q A;  4NGQ A;  2OLS A;  2HI6 A;  3T5M A;  1C30 B;  2JBJ A;  3BHX A;  1VBG A;  4C9E A;  4TJX A;  2PVW A;  2DIK A;  1CX8 A;  3RBU A;  4C8T A;  2C6G A;  3SJX A;  5D29 A;  1EZA A;  2HRO A;  2HWG A;  4TJV A;  5F9M A;  4IIY A;  5ELY A;  2AUM A;  2R82 A;  3TLC A;  2YJV A;  4COB A;  4C84 A;  2MP0 A;  4M8D A;  4EYS A;  1EZB A;  1NBW A;  3I74 A;  4JVO A;  3TLE A;  3BXM A;  4C8U A;  4P4F A;  1ZL0 A;  5JVL A;  3EZB A;  4MI1 A;  4LQG A;  4E94 A;  4NGP A;  5K99 A;  3D7D A;  2OOT A;  2OR4 A;  3T05 A;  1ZYM A;  3TLG B;  1DE4 C;  2C6P A;  3D7F A;  3SR3 A;  4C8A A;  4J0N A;  2E28 A;  4OC3 A;  4CDJ A;  4P4J A;  1A9X B;  1M6V B;  4NGT A;  1Q5X A;  1R61 A;  2EK9 A;  3GJZ A;  4TWE A;  4C9U A;  1Y9Z A;  2CIJ A;  3FEC A;  3T0T A;  3D7H A;  4OME A;  1WVM A;  3TLG A;  4C85 A;  5IB9 A;  3ICU A;  3TLY A;  5JYB A;  2AUN A;  4P4B A;  4NGR A;  1T36 B;  4CDK A;  4MJX A;  3FF3 A;  4P4D A;  4C8F A;  1JDE A;  1KEE B;  3BI1 A;  1VBH A;  4C9R A;  2XEG A;  4NGN A;  4CO9 A;  2XEJ A;  3KRV A;  3U1B A;  3NOJ A;  3FED A;  1KC7 A;  5F5X A;  4C86 A;  4C8C A;  4W9Y A;  1GGO A;  4MCQ A;  3BI0 A;  5FD8 A;  4NGS A;  3VTA A;  3S9M A;  4C99 A;  2GP4 A;  4NGM A;  4OC0 A;  1NXJ A;  1XF1 A;  2EK8 A;  2D0O A;  1V6C A;  3C8O A;  2EZB A;  4COG A;  3FEE A;  3TLA A;  1C3O B;  1Z8L A;  2XEI A;  4OC1 A;  4C8P A;  2EZC A; 
#chains in the Genus database with same CATH homology
 2PCN A;  1J3L A;  3K4I A;  2YJV A;  3C8O A;  1VI4 A;  3NOJ A;  1Q5X A;  1NXJ A;  2YJT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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