3KRVA

The structure of potential metal-dependent hydrolase with cyclase activity
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
204
structure length
201
Chain Sequence
AMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVETFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Geobacillus stearothermophilus
publication title The Structure Of Potential Metal-Dependent Hydrolase With Cyclase Activity
rcsb
molecule keywords Hydrolase
total genus 56
structure length 201
sequence length 204
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 3krvA00
2B0AA 4COBA 4COGA 3KRVA 4J0NA 4CO9A 4CZ1A 1R61A 4M8DA
chains in the Genus database with same CATH superfamily
3K9TA 4MCQA 1C3OB 4JYWA 4E94A 3IIBA 1R61A 1XF1A 4TWEA 4C9EA 2R82A 3FECA 1NBWA 3U1BA 2JBKA 4C85A 2PCNA 4P44A 3TYXA 4LQGA 2XEIA 4EYSA 1VI4A 1WVMA 4C8PA 4COGA 4OC3A 2HROA 3SR3A 3T5MA 4KNGE 3TLGA 4OC0A 4P4BA 4MI1A 1GGOA 4P4DA 4CDKA 1ZRSA 1CS0B 1KBLA 1Y9ZA 2B0AA 3IWWA 4MCSA 4IIYA 3FEDA 1KC7A 1DIKA 2EZAA 2EZBA 2EZCA 3TLYA 1Z8LA 1Q5XA 2OLSA 2YJVA 1C30B 4P4FA 1M6VB 2AUNA 5ELYA 3SJGA 4IIXA 2JBJA 3FEEA 5JVLA 1BXRB 3C8OA 2HWGA 3D7FA 4JVOA 4P4JA 4YN3A 5F1YA 4OC4A 2XEGA 2C6PA 2EK9A 1ZYMA 4OC5A 2X0SA 3RBUA 3G23A 4H1HA 3GJZA 4C9RA 3BHXA 3ICUA 4CO9A 1CE8B 3BI0A 2D0PA 3TLAA 1EZAA 2HI6A 3EZEA 4MCRA 4C8CA 1KEEB 4NGPA 3T07A 3EIFA 5F5XA 4E5SA 2E28A 1VBGA 2CIJA 2MP0A 4C84A 4P45A 2D0OA 2C6GA 4TJVA 5K99A 4C86A 2PVWA 1A9XB 3TLBA 3KRVA 3EZAA 4C8FA 3I74A 4OC2A 3KASA 3S9LA 3S9NA 5IR2A 4NGSA 2FM4A 3EZBA 5D29A 2OR4A 3BXMA 4OMEA 4NGNA 3T0TA 4P4EA 2XEJA 4P4IA 4INJA 3T05A 1VBHA 1ZL0A 4JZ0A 2OOTA 4C9VA 5F09A 3D7HA 4MCPA 4OC1A 1T36B 2EK8A 3SJEA 5F9MA 4C9AA 4MJXA 1DE4C 4NGMA 3VTAA 4NGTA 1JDEA 1V6CA 3K4IA 3TLZA 4C9UA 2XEFA 3SJFA 2GP4A 2C5QA 3NOJA 3S9MA 4C8AA 4C8TA 4CZ1A 5JYBA 4C8UA 1EZBA 2DIKA 3D7DA 3TLGB 1CX8A 5IB9A 4CDJA 3TLEA 3BI1A 4C99A 5FD8A 2AUMA 4TJXA 1J3LA 3SJXA 1NXJA 3D7GA 4COBA 4W9YA 2C6CA 2YJTA 3FF3A 4J0NA 4X3RA 2PVVA 1JDBC 4NGRA 3I6SA 4NGQA 3TLCA 4M8DA
chains in the Genus database with same CATH topology
2B0AA 4COBA 4COGA 3KRVA 4J0NA 4CO9A 4CZ1A 1R61A 4M8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B0A A;  4COB A;  4COG A;  3KRV A;  4J0N A;  4CO9 A;  4CZ1 A;  1R61 A;  4M8D A; 
#chains in the Genus database with same CATH topology
 3K9T A;  4MCQ A;  1C3O B;  4JYW A;  4E94 A;  3IIB A;  1R61 A;  1XF1 A;  4TWE A;  4C9E A;  2R82 A;  3FEC A;  1NBW A;  3U1B A;  2JBK A;  4C85 A;  2PCN A;  4P44 A;  3TYX A;  4LQG A;  2XEI A;  4EYS A;  1VI4 A;  1WVM A;  4C8P A;  4COG A;  4OC3 A;  2HRO A;  3SR3 A;  3T5M A;  4KNG E;  3TLG A;  4OC0 A;  4P4B A;  4MI1 A;  1GGO A;  4P4D A;  4CDK A;  1ZRS A;  1CS0 B;  1KBL A;  1Y9Z A;  2B0A A;  3IWW A;  4MCS A;  4IIY A;  3FED A;  1KC7 A;  1DIK A;  2EZA A;  2EZB A;  2EZC A;  3TLY A;  1Z8L A;  1Q5X A;  2OLS A;  2YJV A;  1C30 B;  4P4F A;  1M6V B;  2AUN A;  5ELY A;  3SJG A;  4IIX A;  2JBJ A;  3FEE A;  5JVL A;  1BXR B;  3C8O A;  2HWG A;  3D7F A;  4JVO A;  4P4J A;  4YN3 A;  5F1Y A;  4OC4 A;  2XEG A;  2C6P A;  2EK9 A;  1ZYM A;  4OC5 A;  2X0S A;  3RBU A;  3G23 A;  4H1H A;  3GJZ A;  4C9R A;  3BHX A;  3ICU A;  4CO9 A;  1CE8 B;  3BI0 A;  2D0P A;  3TLA A;  1EZA A;  2HI6 A;  3EZE A;  4MCR A;  4C8C A;  1KEE B;  4NGP A;  3T07 A;  3EIF A;  5F5X A;  4E5S A;  2E28 A;  1VBG A;  2CIJ A;  2MP0 A;  4C84 A;  4P45 A;  2D0O A;  2C6G A;  4TJV A;  5K99 A;  4C86 A;  2PVW A;  1A9X B;  3TLB A;  3KRV A;  3EZA A;  4C8F A;  3I74 A;  4OC2 A;  3KAS A;  3S9L A;  3S9N A;  5IR2 A;  4NGS A;  2FM4 A;  3EZB A;  5D29 A;  2OR4 A;  3BXM A;  4OME A;  4NGN A;  3T0T A;  4P4E A;  2XEJ A;  4P4I A;  4INJ A;  3T05 A;  1VBH A;  1ZL0 A;  4JZ0 A;  2OOT A;  4C9V A;  5F09 A;  3D7H A;  4MCP A;  4OC1 A;  1T36 B;  2EK8 A;  3SJE A;  5F9M A;  4C9A A;  4MJX A;  1DE4 C;  4NGM A;  3VTA A;  4NGT A;  1JDE A;  1V6C A;  3K4I A;  3TLZ A;  4C9U A;  2XEF A;  3SJF A;  2GP4 A;  2C5Q A;  3NOJ A;  3S9M A;  4C8A A;  4C8T A;  4CZ1 A;  5JYB A;  4C8U A;  1EZB A;  2DIK A;  3D7D A;  3TLG B;  1CX8 A;  5IB9 A;  4CDJ A;  3TLE A;  3BI1 A;  4C99 A;  5FD8 A;  2AUM A;  4TJX A;  1J3L A;  3SJX A;  1NXJ A;  3D7G A;  4COB A;  4W9Y A;  2C6C A;  2YJT A;  3FF3 A;  4J0N A;  4X3R A;  2PVV A;  1JDB C;  4NGR A;  3I6S A;  4NGQ A;  3TLC A;  4M8D A; 
#chains in the Genus database with same CATH homology
 2B0A A;  4COB A;  4COG A;  3KRV A;  4J0N A;  4CO9 A;  4CZ1 A;  1R61 A;  4M8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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