3KRVA

The structure of potential metal-dependent hydrolase with cyclase activity
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
204
structure length
201
Chain Sequence
AMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVETFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hydrolase
publication title The Structure Of Potential Metal-Dependent Hydrolase With Cyclase Activity
rcsb
source organism Geobacillus stearothermophilus
molecule tags Hydrolase
total genus 56
structure length 201
sequence length 204
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 3krvA00
1R61A 4J0NA 4M8DA 2B0AA 4COGA 4COBA 3KRVA 4CZ1A 4CO9A
chains in the Genus database with same CATH superfamily
3BXMA 4J0NA 2HI6A 3S9NA 3T05A 2MP0A 3BHXA 5F9MA 5JYBA 1JDBC 1KBLA 4C8AA 2D0OA 3TLGB 3TLYA 4OC5A 2XEJA 4NGMA 4TJVA 3T0TA 1M6VB 3K4IA 4H1HA 1EZAA 3D7GA 5IB9A 2E28A 2FM4A 4M8DA 3ICUA 3FF3A 5F1YA 1NXJA 3TLBA 1ZRSA 2EK8A 2HROA 5ELYA 4C86A 4NGPA 4EYSA 1EZBA 3D7FA 4MCRA 4X3RA 4C8CA 1Q5XA 3G23A 2AUNA 3FECA 4TWEA 4OMEA 1ZYMA 4MCSA 5F5XA 3D7DA 3I74A 5D29A 2OR4A 4COGA 3TLZA 2XEFA 1NBWA 2CIJA 3BI0A 4OC4A 3EZAA 4CO9A 3SR3A 3TLEA 4OC0A 3S9MA 4OC3A 3S9LA 1A9XB 3EIFA 1VBHA 4IIXA 4INJA 2X0SA 4NGQA 1R61A 3NOJA 4MCPA 4C8UA 1CS0B 4P4IA 4OC2A 4TJXA 5JVLA 3U1BA 4NGRA 3D7HA 3GJZA 4C8TA 4MI1A 2XEIA 2OOTA 4MCQA 1CX8A 1Z8LA 3TYXA 1KC7A 4NGSA 4C9UA 2AUMA 4NGNA 4C9RA 3KASA 4C84A 4COBA 4CDJA 1J3LA 4C9EA 1WVMA 2C6CA 4C85A 2PVWA 4OC1A 3EZEA 3K9TA 2R82A 4E5SA 4CDKA 4P4DA 2EZBA 4KNGE 2OLSA 3EZBA 4P4FA 3SJEA 4JVOA 1DIKA 4LQGA 2C5QA 2D0PA 4NGTA 2B0AA 2C6GA 1VI4A 1C3OB 1KEEB 3RBUA 3TLGA 3BI1A 1BXRB 4JYWA 4C9AA 4C8FA 3T5MA 3C8OA 5K99A 4C8PA 2YJTA 1CE8B 4W9YA 2JBJA 4C99A 4YN3A 2HWGA 1XF1A 1C30B 4P45A 4E94A 1V6CA 4P4BA 2JBKA 4CZ1A 4MJXA 2EZCA 4P44A 2EK9A 3T07A 1ZL0A 2XEGA 4JZ0A 1JDEA 2PVVA 3SJGA 2GP4A 1DE4C 1Y9ZA 2YJVA 3FEDA 3IWWA 4P4JA 4C9VA 1GGOA 3SJXA 2C6PA 1T36B 2DIKA 2EZAA 3SJFA 3FEEA 1VBGA 3TLCA 5F09A 3I6SA 3IIBA 3KRVA 2PCNA 4P4EA 5FD8A 3TLAA 5IR2A 4IIYA 3VTAA
chains in the Genus database with same CATH topology
1R61A 4J0NA 4M8DA 2B0AA 4COGA 4COBA 3KRVA 4CZ1A 4CO9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R61 A;  4J0N A;  4M8D A;  2B0A A;  4COG A;  4COB A;  3KRV A;  4CZ1 A;  4CO9 A; 
#chains in the Genus database with same CATH topology
 3BXM A;  4J0N A;  2HI6 A;  3S9N A;  3T05 A;  2MP0 A;  3BHX A;  5F9M A;  5JYB A;  1JDB C;  1KBL A;  4C8A A;  2D0O A;  3TLG B;  3TLY A;  4OC5 A;  2XEJ A;  4NGM A;  4TJV A;  3T0T A;  1M6V B;  3K4I A;  4H1H A;  1EZA A;  3D7G A;  5IB9 A;  2E28 A;  2FM4 A;  4M8D A;  3ICU A;  3FF3 A;  5F1Y A;  1NXJ A;  3TLB A;  1ZRS A;  2EK8 A;  2HRO A;  5ELY A;  4C86 A;  4NGP A;  4EYS A;  1EZB A;  3D7F A;  4MCR A;  4X3R A;  4C8C A;  1Q5X A;  3G23 A;  2AUN A;  3FEC A;  4TWE A;  4OME A;  1ZYM A;  4MCS A;  5F5X A;  3D7D A;  3I74 A;  5D29 A;  2OR4 A;  4COG A;  3TLZ A;  2XEF A;  1NBW A;  2CIJ A;  3BI0 A;  4OC4 A;  3EZA A;  4CO9 A;  3SR3 A;  3TLE A;  4OC0 A;  3S9M A;  4OC3 A;  3S9L A;  1A9X B;  3EIF A;  1VBH A;  4IIX A;  4INJ A;  2X0S A;  4NGQ A;  1R61 A;  3NOJ A;  4MCP A;  4C8U A;  1CS0 B;  4P4I A;  4OC2 A;  4TJX A;  5JVL A;  3U1B A;  4NGR A;  3D7H A;  3GJZ A;  4C8T A;  4MI1 A;  2XEI A;  2OOT A;  4MCQ A;  1CX8 A;  1Z8L A;  3TYX A;  1KC7 A;  4NGS A;  4C9U A;  2AUM A;  4NGN A;  4C9R A;  3KAS A;  4C84 A;  4COB A;  4CDJ A;  1J3L A;  4C9E A;  1WVM A;  2C6C A;  4C85 A;  2PVW A;  4OC1 A;  3EZE A;  3K9T A;  2R82 A;  4E5S A;  4CDK A;  4P4D A;  2EZB A;  4KNG E;  2OLS A;  3EZB A;  4P4F A;  3SJE A;  4JVO A;  1DIK A;  4LQG A;  2C5Q A;  2D0P A;  4NGT A;  2B0A A;  2C6G A;  1VI4 A;  1C3O B;  1KEE B;  3RBU A;  3TLG A;  3BI1 A;  1BXR B;  4JYW A;  4C9A A;  4C8F A;  3T5M A;  3C8O A;  5K99 A;  4C8P A;  2YJT A;  1CE8 B;  4W9Y A;  2JBJ A;  4C99 A;  4YN3 A;  2HWG A;  1XF1 A;  1C30 B;  4P45 A;  4E94 A;  1V6C A;  4P4B A;  2JBK A;  4CZ1 A;  4MJX A;  2EZC A;  4P44 A;  2EK9 A;  3T07 A;  1ZL0 A;  2XEG A;  4JZ0 A;  1JDE A;  2PVV A;  3SJG A;  2GP4 A;  1DE4 C;  1Y9Z A;  2YJV A;  3FED A;  3IWW A;  4P4J A;  4C9V A;  1GGO A;  3SJX A;  2C6P A;  1T36 B;  2DIK A;  2EZA A;  3SJF A;  3FEE A;  1VBG A;  3TLC A;  5F09 A;  3I6S A;  3IIB A;  3KRV A;  2PCN A;  4P4E A;  5FD8 A;  3TLA A;  5IR2 A;  4IIY A;  3VTA A; 
#chains in the Genus database with same CATH homology
 1R61 A;  4J0N A;  4M8D A;  2B0A A;  4COG A;  4COB A;  3KRV A;  4CZ1 A;  4CO9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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