3KRVA

The structure of potential metal-dependent hydrolase with cyclase activity
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
204
structure length
201
Chain Sequence
AMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVETFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hydrolase
publication title The Structure Of Potential Metal-Dependent Hydrolase With Cyclase Activity
rcsb
source organism Geobacillus stearothermophilus
molecule tags Hydrolase
total genus 56
structure length 201
sequence length 204
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 3krvA00
1R61A 3KRVA 4COBA 4CZ1A 2B0AA 4M8DA 4J0NA 4CO9A 4COGA
chains in the Genus database with same CATH superfamily
1Z8LA 1R61A 2C6PA 2GP4A 3D7GA 1XF1A 2HWGA 2XEGA 2YJTA 4YN3A 4C8AA 4MI1A 3FF3A 4C8PA 3D7DA 3TLZA 2E28A 2OR4A 4C9UA 4OC2A 2D0OA 3SJGA 4CZ1A 2DIKA 1BXRB 2R82A 4M8DA 3TYXA 4MCSA 2PVVA 4TWEA 2XEJA 1T36B 1VBHA 2AUMA 2YJVA 3S9MA 4C9RA 2C6GA 4COBA 3EZEA 4C85A 5ELYA 5FD8A 1CS0B 4MCRA 3ICUA 1WVMA 4W9YA 3BHXA 2HROA 5F9MA 4P4IA 3D7FA 1A9XB 4C8CA 2EZBA 5JVLA 3S9NA 5F09A 4OC0A 4TJVA 3G23A 4MCQA 1ZRSA 4CO9A 3T07A 4P4FA 3KASA 3GJZA 4CDJA 3BI1A 1ZL0A 5JYBA 3IIBA 1VBGA 1KEEB 1VI4A 4C9VA 3FECA 3KRVA 2XEIA 2OLSA 2D0PA 4LQGA 3SJXA 1J3LA 1C3OB 3C8OA 4C84A 4EYSA 3SJEA 3S9LA 2JBKA 1CX8A 4P4BA 1Y9ZA 2MP0A 4KNGE 3TLAA 4E5SA 3BXMA 4JZ0A 4MJXA 1KBLA 4NGMA 1V6CA 4OC4A 3SJFA 1Q5XA 4NGPA 2HI6A 3FEEA 1C30B 3FEDA 4OC1A 4C86A 1DE4C 3EIFA 2JBJA 3TLCA 3TLEA 4NGNA 1DIKA 3I74A 5F1YA 3TLGB 2PCNA 4P4JA 5D29A 4COGA 1KC7A 3K9TA 3BI0A 4JVOA 4P4EA 4IIXA 4P4DA 3T0TA 3EZAA 3K4IA 3U1BA 4OC3A 4X3RA 4NGTA 4TJXA 4H1HA 4P45A 3VTAA 5IB9A 2XEFA 3SR3A 2C5QA 3TLGA 4IIYA 3T5MA 1NBWA 2FM4A 4JYWA 5F5XA 1EZBA 3NOJA 2C6CA 1CE8B 4C9AA 4CDKA 4NGSA 3I6SA 4C8FA 5K99A 1JDBC 3IWWA 2PVWA 4C8UA 2B0AA 4INJA 4OC5A 2OOTA 3EZBA 4E94A 2EZAA 4NGQA 4P44A 1EZAA 2EZCA 1ZYMA 2CIJA 4NGRA 1NXJA 2EK8A 4J0NA 4C8TA 2AUNA 3RBUA 3TLYA 4C99A 1GGOA 2EK9A 3T05A 4C9EA 1JDEA 1M6VB 2X0SA 3TLBA 4MCPA 5IR2A 3D7HA 4OMEA
chains in the Genus database with same CATH topology
1R61A 3KRVA 4COBA 4CZ1A 2B0AA 4M8DA 4J0NA 4CO9A 4COGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R61 A;  3KRV A;  4COB A;  4CZ1 A;  2B0A A;  4M8D A;  4J0N A;  4CO9 A;  4COG A; 
#chains in the Genus database with same CATH topology
 1Z8L A;  1R61 A;  2C6P A;  2GP4 A;  3D7G A;  1XF1 A;  2HWG A;  2XEG A;  2YJT A;  4YN3 A;  4C8A A;  4MI1 A;  3FF3 A;  4C8P A;  3D7D A;  3TLZ A;  2E28 A;  2OR4 A;  4C9U A;  4OC2 A;  2D0O A;  3SJG A;  4CZ1 A;  2DIK A;  1BXR B;  2R82 A;  4M8D A;  3TYX A;  4MCS A;  2PVV A;  4TWE A;  2XEJ A;  1T36 B;  1VBH A;  2AUM A;  2YJV A;  3S9M A;  4C9R A;  2C6G A;  4COB A;  3EZE A;  4C85 A;  5ELY A;  5FD8 A;  1CS0 B;  4MCR A;  3ICU A;  1WVM A;  4W9Y A;  3BHX A;  2HRO A;  5F9M A;  4P4I A;  3D7F A;  1A9X B;  4C8C A;  2EZB A;  5JVL A;  3S9N A;  5F09 A;  4OC0 A;  4TJV A;  3G23 A;  4MCQ A;  1ZRS A;  4CO9 A;  3T07 A;  4P4F A;  3KAS A;  3GJZ A;  4CDJ A;  3BI1 A;  1ZL0 A;  5JYB A;  3IIB A;  1VBG A;  1KEE B;  1VI4 A;  4C9V A;  3FEC A;  3KRV A;  2XEI A;  2OLS A;  2D0P A;  4LQG A;  3SJX A;  1J3L A;  1C3O B;  3C8O A;  4C84 A;  4EYS A;  3SJE A;  3S9L A;  2JBK A;  1CX8 A;  4P4B A;  1Y9Z A;  2MP0 A;  4KNG E;  3TLA A;  4E5S A;  3BXM A;  4JZ0 A;  4MJX A;  1KBL A;  4NGM A;  1V6C A;  4OC4 A;  3SJF A;  1Q5X A;  4NGP A;  2HI6 A;  3FEE A;  1C30 B;  3FED A;  4OC1 A;  4C86 A;  1DE4 C;  3EIF A;  2JBJ A;  3TLC A;  3TLE A;  4NGN A;  1DIK A;  3I74 A;  5F1Y A;  3TLG B;  2PCN A;  4P4J A;  5D29 A;  4COG A;  1KC7 A;  3K9T A;  3BI0 A;  4JVO A;  4P4E A;  4IIX A;  4P4D A;  3T0T A;  3EZA A;  3K4I A;  3U1B A;  4OC3 A;  4X3R A;  4NGT A;  4TJX A;  4H1H A;  4P45 A;  3VTA A;  5IB9 A;  2XEF A;  3SR3 A;  2C5Q A;  3TLG A;  4IIY A;  3T5M A;  1NBW A;  2FM4 A;  4JYW A;  5F5X A;  1EZB A;  3NOJ A;  2C6C A;  1CE8 B;  4C9A A;  4CDK A;  4NGS A;  3I6S A;  4C8F A;  5K99 A;  1JDB C;  3IWW A;  2PVW A;  4C8U A;  2B0A A;  4INJ A;  4OC5 A;  2OOT A;  3EZB A;  4E94 A;  2EZA A;  4NGQ A;  4P44 A;  1EZA A;  2EZC A;  1ZYM A;  2CIJ A;  4NGR A;  1NXJ A;  2EK8 A;  4J0N A;  4C8T A;  2AUN A;  3RBU A;  3TLY A;  4C99 A;  1GGO A;  2EK9 A;  3T05 A;  4C9E A;  1JDE A;  1M6V B;  2X0S A;  3TLB A;  4MCP A;  5IR2 A;  3D7H A;  4OME A; 
#chains in the Genus database with same CATH homology
 1R61 A;  3KRV A;  4COB A;  4CZ1 A;  2B0A A;  4M8D A;  4J0N A;  4CO9 A;  4COG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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