3KRVA

The structure of potential metal-dependent hydrolase with cyclase activity
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
204
structure length
201
Chain Sequence
AMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVETFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Hydrolase
publication title The Structure Of Potential Metal-Dependent Hydrolase With Cyclase Activity
rcsb
source organism Geobacillus stearothermophilus
total genus 56
structure length 201
sequence length 204
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 3krvA00
4CZ1A 4COBA 1R61A 4CO9A 4M8DA 3KRVA 4COGA 4J0NA 2B0AA
chains in the Genus database with same CATH superfamily
3TLBA 4P4JA 3EZEA 1Z8LA 2JBJA 4E5SA 3G23A 2D0PA 2EK9A 3VTAA 5IB9A 4C9RA 4CZ1A 1BXRB 3KASA 3T5MA 4J0NA 1EZBA 5F09A 3TLAA 1Q5XA 3D7GA 1M6VB 3K9TA 5D29A 1T36B 3BI1A 2JBKA 2HROA 3BXMA 1VBGA 4CDKA 3IWWA 4OC0A 3SJGA 4C9VA 3TLYA 3TLCA 4NGNA 4C8AA 2AUNA 2PCNA 3U1BA 2R82A 5K99A 4INJA 3EZBA 3FF3A 1ZL0A 3C8OA 4NGRA 1C30B 4C8TA 4TJVA 2D0OA 2HWGA 4C85A 3KRVA 4P44A 4JYWA 1JDEA 2DIKA 2GP4A 2FM4A 1C3OB 4P4BA 1VBHA 5IR2A 2CIJA 3FEDA 2XEGA 4C8UA 4JZ0A 4H1HA 2EZBA 2X0SA 4P4DA 4COGA 4P4EA 4MJXA 4NGPA 1ZRSA 1CE8B 2EK8A 2MP0A 3SJXA 2HI6A 4OMEA 3TLGB 2EZAA 2XEJA 4W9YA 3TLEA 1GGOA 2YJVA 4NGMA 2OLSA 4OC5A 2OR4A 1R61A 1WVMA 4NGSA 1ZYMA 4CDJA 3BHXA 3K4IA 4IIYA 4C84A 3EZAA 4OC1A 3I74A 2EZCA 2C6GA 3GJZA 3TYXA 3FECA 1VI4A 2XEFA 4P4FA 4C9UA 1JDBC 3S9LA 4MCSA 4TJXA 3SJFA 2B0AA 4C8FA 4EYSA 5F5XA 4MCPA 1DE4C 3BI0A 2C6CA 3NOJA 5ELYA 3ICUA 1J3LA 3D7HA 1CX8A 2OOTA 5JYBA 2YJTA 4COBA 2C6PA 4OC4A 3TLGA 3TLZA 3FEEA 4C9EA 4OC2A 5F1YA 3SR3A 2E28A 1NBWA 4YN3A 4M8DA 5F9MA 2C5QA 3D7DA 3IIBA 4MI1A 3RBUA 4C8CA 4JVOA 3T05A 1A9XB 4OC3A 4MCQA 1Y9ZA 3T07A 1EZAA 1XF1A 4NGQA 1KC7A 3I6SA 4KNGE 4IIXA 1V6CA 2PVWA 3EIFA 3S9MA 5JVLA 4TWEA 4E94A 5FD8A 4NGTA 1DIKA 1NXJA 4LQGA 1KBLA 3S9NA 4MCRA 4C8PA 3T0TA 4C99A 4C9AA 1KEEB 2PVVA 3SJEA 4X3RA 4CO9A 4P4IA 2XEIA 1CS0B 2AUMA 4P45A 3D7FA 4C86A
chains in the Genus database with same CATH topology
4CZ1A 4COBA 1R61A 4CO9A 4M8DA 3KRVA 4COGA 4J0NA 2B0AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CZ1 A;  4COB A;  1R61 A;  4CO9 A;  4M8D A;  3KRV A;  4COG A;  4J0N A;  2B0A A; 
#chains in the Genus database with same CATH topology
 3TLB A;  4P4J A;  3EZE A;  1Z8L A;  2JBJ A;  4E5S A;  3G23 A;  2D0P A;  2EK9 A;  3VTA A;  5IB9 A;  4C9R A;  4CZ1 A;  1BXR B;  3KAS A;  3T5M A;  4J0N A;  1EZB A;  5F09 A;  3TLA A;  1Q5X A;  3D7G A;  1M6V B;  3K9T A;  5D29 A;  1T36 B;  3BI1 A;  2JBK A;  2HRO A;  3BXM A;  1VBG A;  4CDK A;  3IWW A;  4OC0 A;  3SJG A;  4C9V A;  3TLY A;  3TLC A;  4NGN A;  4C8A A;  2AUN A;  2PCN A;  3U1B A;  2R82 A;  5K99 A;  4INJ A;  3EZB A;  3FF3 A;  1ZL0 A;  3C8O A;  4NGR A;  1C30 B;  4C8T A;  4TJV A;  2D0O A;  2HWG A;  4C85 A;  3KRV A;  4P44 A;  4JYW A;  1JDE A;  2DIK A;  2GP4 A;  2FM4 A;  1C3O B;  4P4B A;  1VBH A;  5IR2 A;  2CIJ A;  3FED A;  2XEG A;  4C8U A;  4JZ0 A;  4H1H A;  2EZB A;  2X0S A;  4P4D A;  4COG A;  4P4E A;  4MJX A;  4NGP A;  1ZRS A;  1CE8 B;  2EK8 A;  2MP0 A;  3SJX A;  2HI6 A;  4OME A;  3TLG B;  2EZA A;  2XEJ A;  4W9Y A;  3TLE A;  1GGO A;  2YJV A;  4NGM A;  2OLS A;  4OC5 A;  2OR4 A;  1R61 A;  1WVM A;  4NGS A;  1ZYM A;  4CDJ A;  3BHX A;  3K4I A;  4IIY A;  4C84 A;  3EZA A;  4OC1 A;  3I74 A;  2EZC A;  2C6G A;  3GJZ A;  3TYX A;  3FEC A;  1VI4 A;  2XEF A;  4P4F A;  4C9U A;  1JDB C;  3S9L A;  4MCS A;  4TJX A;  3SJF A;  2B0A A;  4C8F A;  4EYS A;  5F5X A;  4MCP A;  1DE4 C;  3BI0 A;  2C6C A;  3NOJ A;  5ELY A;  3ICU A;  1J3L A;  3D7H A;  1CX8 A;  2OOT A;  5JYB A;  2YJT A;  4COB A;  2C6P A;  4OC4 A;  3TLG A;  3TLZ A;  3FEE A;  4C9E A;  4OC2 A;  5F1Y A;  3SR3 A;  2E28 A;  1NBW A;  4YN3 A;  4M8D A;  5F9M A;  2C5Q A;  3D7D A;  3IIB A;  4MI1 A;  3RBU A;  4C8C A;  4JVO A;  3T05 A;  1A9X B;  4OC3 A;  4MCQ A;  1Y9Z A;  3T07 A;  1EZA A;  1XF1 A;  4NGQ A;  1KC7 A;  3I6S A;  4KNG E;  4IIX A;  1V6C A;  2PVW A;  3EIF A;  3S9M A;  5JVL A;  4TWE A;  4E94 A;  5FD8 A;  4NGT A;  1DIK A;  1NXJ A;  4LQG A;  1KBL A;  3S9N A;  4MCR A;  4C8P A;  3T0T A;  4C99 A;  4C9A A;  1KEE B;  2PVV A;  3SJE A;  4X3R A;  4CO9 A;  4P4I A;  2XEI A;  1CS0 B;  2AUM A;  4P45 A;  3D7F A;  4C86 A; 
#chains in the Genus database with same CATH homology
 4CZ1 A;  4COB A;  1R61 A;  4CO9 A;  4M8D A;  3KRV A;  4COG A;  4J0N A;  2B0A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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