4C85A

Zebrafish znrf3 ectodomain crystal form ii
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
151
structure length
143
Chain Sequence
DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGDLYEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
source organism Danio rerio
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
total genus 36
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c85A00
2OOTA 4P4BA 4NGNA 4OC4A 4C85A 4C8CA 4OC0A 3BHXA 4C8TA 2JBKA 2CIJA 4C9EA 5IB9A 3I6SA 2XEIA 4OC2A 4MCRA 1Z8LA 3IIBA 4CDJA 4MCPA 4P4JA 4NGMA 2PVVA 1CX8A 4YN3A 4C8PA 4OMEA 4NGRA 3ICUA 3FECA 1WVMA 4P44A 4C9VA 4C86A 3KASA 4P4IA 4TJVA 3FEEA 2XEJA 4NGTA 4C9UA 5D29A 4NGPA 5F09A 4X3RA 2C6PA 3SJXA 4KNGE 4C8UA 3FEDA 3SJEA 4W9YA 4C8AA 2EK9A 4P45A 1XF1A 1DE4C 2XEFA 4C9RA 4CDKA 3VTAA 2C6GA 4C99A 3RBUA 3D7FA 5ELYA 4NGSA 4C8FA 4MCQA 3S9NA 2PVWA 3IWWA 3S9MA 4C84A 3S9LA 4OC3A 3BXMA 4JZ0A 4P4FA 4MCSA 3BI0A 3FF3A 3SJFA 3BI1A 3SJGA 4JYWA 4TWEA 3D7HA 3D7DA 2JBJA 4OC5A 2OR4A 2XEGA 4NGQA 1Y9ZA 4P4EA 4TJXA 3EIFA 3I74A 1V6CA 3D7GA 2EK8A 4P4DA 4C9AA 2C6CA 4LQGA 4OC1A
chains in the Genus database with same CATH superfamily
2OOTA 2FM4A 3TLAA 3U1BA 3K9TA 4NGNA 4P4BA 4OC4A 4C85A 4C8CA 4OC0A 4CO9A 3BHXA 3TLBA 4C8TA 2CIJA 2JBKA 4INJA 4C9EA 5IB9A 1ZYMA 2XEIA 3I6SA 5F9MA 1NBWA 2AUNA 4OC2A 4MCRA 2EZBA 1Z8LA 2E28A 3NOJA 4E94A 2YJTA 3IIBA 5JYBA 2GP4A 3TLCA 1J3LA 4MCPA 1JDEA 4NGMA 4P4JA 4CDJA 2PVVA 1EZAA 3T05A 1CX8A 4EYSA 2OLSA 4YN3A 1JDBC 4C8PA 4OMEA 4NGRA 3TLGA 4IIYA 3ICUA 3TLGB 1WVMA 3FECA 3EZEA 1VBHA 4P44A 4H1HA 4C9VA 2MP0A 1DIKA 2D0PA 4C86A 3KASA 1C3OB 4IIXA 1GGOA 3FEEA 4P4IA 4TJVA 2HI6A 2XEJA 1ZL0A 3TYXA 5IR2A 4NGTA 4C9UA 5D29A 4NGPA 5F09A 4X3RA 3C8OA 2C6PA 1ZRSA 2DIKA 3EZAA 4KNGE 3EZBA 2B0AA 3SJXA 4CZ1A 1NXJA 4C8UA 2HROA 3FEDA 3SJEA 4W9YA 4C8AA 2EK9A 3TLZA 4COBA 2C5QA 2R82A 1XF1A 4P45A 1DE4C 2XEFA 1Q5XA 3GJZA 4C9RA 2D0OA 3T0TA 4CDKA 4MI1A 3VTAA 2C6GA 4MJXA 3K4IA 4C99A 1VI4A 3RBUA 3D7FA 5ELYA 3TLYA 2AUMA 4COGA 4NGSA 1CS0B 4C8FA 1C30B 4MCQA 2EZCA 5K99A 5F1YA 1R61A 2PVWA 3IWWA 3S9MA 4C84A 3S9NA 3S9LA 4OC3A 2EZAA 3BXMA 3G23A 2YJVA 4M8DA 4JZ0A 4P4FA 1T36B 2HWGA 3BI0A 4MCSA 3SR3A 3FF3A 3SJFA 3BI1A 3SJGA 4JYWA 4J0NA 4TWEA 3D7HA 1A9XB 3D7DA 3KRVA 2JBJA 2X0SA 1VBGA 4OC5A 5F5XA 1BXRB 2OR4A 2XEGA 1M6VB 1KEEB 4NGQA 1Y9ZA 4P4EA 4TJXA 1KC7A 1CE8B 1EZBA 3EIFA 3I74A 2PCNA 1V6CA 5JVLA 3D7GA 2EK8A 5FD8A 4P4DA 4C9AA 2C6CA 4LQGA 1KBLA 4JVOA 4OC1A 4E5SA 3T07A 3TLEA 3T5MA
chains in the Genus database with same CATH topology
2OOTA 3K9TA 4NGNA 4P4BA 4OC4A 4C85A 4C8CA 4OC0A 3BHXA 4C8TA 2JBKA 2CIJA 4C9EA 5IB9A 3I6SA 2XEIA 4OC2A 4MCRA 1Z8LA 3IIBA 2GP4A 4CDJA 4MCPA 4P4JA 4NGMA 2PVVA 1CX8A 4YN3A 4C8PA 4OMEA 4NGRA 3ICUA 3FECA 1WVMA 4P44A 4C9VA 4C86A 3KASA 4P4IA 4TJVA 3FEEA 2XEJA 5IR2A 4NGTA 4C9UA 5D29A 4NGPA 5F09A 4X3RA 2C6PA 3SJXA 4KNGE 4C8UA 3FEDA 3SJEA 4W9YA 4C8AA 2EK9A 2C5QA 4P45A 1XF1A 1DE4C 2XEFA 4C9RA 4CDKA 3VTAA 2C6GA 4C99A 3RBUA 3D7FA 5ELYA 4NGSA 4C8FA 4MCQA 3S9NA 2PVWA 3IWWA 3S9MA 4C84A 3S9LA 4OC3A 3BXMA 4JZ0A 4P4FA 4MCSA 3BI0A 3FF3A 3SJFA 3BI1A 3SJGA 4JYWA 4TWEA 3D7HA 3D7DA 2JBJA 4OC5A 2OR4A 2XEGA 4NGQA 1Y9ZA 4P4EA 4TJXA 3EIFA 3I74A 1V6CA 3D7GA 2EK8A 4P4DA 4C9AA 2C6CA 4LQGA 4OC1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OOT A;  4P4B A;  4NGN A;  4OC4 A;  4C85 A;  4C8C A;  4OC0 A;  3BHX A;  4C8T A;  2JBK A;  2CIJ A;  4C9E A;  5IB9 A;  3I6S A;  2XEI A;  4OC2 A;  4MCR A;  1Z8L A;  3IIB A;  4CDJ A;  4MCP A;  4P4J A;  4NGM A;  2PVV A;  1CX8 A;  4YN3 A;  4C8P A;  4OME A;  4NGR A;  3ICU A;  3FEC A;  1WVM A;  4P44 A;  4C9V A;  4C86 A;  3KAS A;  4P4I A;  4TJV A;  3FEE A;  2XEJ A;  4NGT A;  4C9U A;  5D29 A;  4NGP A;  5F09 A;  4X3R A;  2C6P A;  3SJX A;  4KNG E;  4C8U A;  3FED A;  3SJE A;  4W9Y A;  4C8A A;  2EK9 A;  4P45 A;  1XF1 A;  1DE4 C;  2XEF A;  4C9R A;  4CDK A;  3VTA A;  2C6G A;  4C99 A;  3RBU A;  3D7F A;  5ELY A;  4NGS A;  4C8F A;  4MCQ A;  3S9N A;  2PVW A;  3IWW A;  3S9M A;  4C84 A;  3S9L A;  4OC3 A;  3BXM A;  4JZ0 A;  4P4F A;  4MCS A;  3BI0 A;  3FF3 A;  3SJF A;  3BI1 A;  3SJG A;  4JYW A;  4TWE A;  3D7H A;  3D7D A;  2JBJ A;  4OC5 A;  2OR4 A;  2XEG A;  4NGQ A;  1Y9Z A;  4P4E A;  4TJX A;  3EIF A;  3I74 A;  1V6C A;  3D7G A;  2EK8 A;  4P4D A;  4C9A A;  2C6C A;  4LQG A;  4OC1 A; 
#chains in the Genus database with same CATH topology
 2OOT A;  2FM4 A;  3TLA A;  3U1B A;  3K9T A;  4NGN A;  4P4B A;  4OC4 A;  4C85 A;  4C8C A;  4OC0 A;  4CO9 A;  3BHX A;  3TLB A;  4C8T A;  2CIJ A;  2JBK A;  4INJ A;  4C9E A;  5IB9 A;  1ZYM A;  2XEI A;  3I6S A;  5F9M A;  1NBW A;  2AUN A;  4OC2 A;  4MCR A;  2EZB A;  1Z8L A;  2E28 A;  3NOJ A;  4E94 A;  2YJT A;  3IIB A;  5JYB A;  2GP4 A;  3TLC A;  1J3L A;  4MCP A;  1JDE A;  4NGM A;  4P4J A;  4CDJ A;  2PVV A;  1EZA A;  3T05 A;  1CX8 A;  4EYS A;  2OLS A;  4YN3 A;  1JDB C;  4C8P A;  4OME A;  4NGR A;  3TLG A;  4IIY A;  3ICU A;  3TLG B;  1WVM A;  3FEC A;  3EZE A;  1VBH A;  4P44 A;  4H1H A;  4C9V A;  2MP0 A;  1DIK A;  2D0P A;  4C86 A;  3KAS A;  1C3O B;  4IIX A;  1GGO A;  3FEE A;  4P4I A;  4TJV A;  2HI6 A;  2XEJ A;  1ZL0 A;  3TYX A;  5IR2 A;  4NGT A;  4C9U A;  5D29 A;  4NGP A;  5F09 A;  4X3R A;  3C8O A;  2C6P A;  1ZRS A;  2DIK A;  3EZA A;  4KNG E;  3EZB A;  2B0A A;  3SJX A;  4CZ1 A;  1NXJ A;  4C8U A;  2HRO A;  3FED A;  3SJE A;  4W9Y A;  4C8A A;  2EK9 A;  3TLZ A;  4COB A;  2C5Q A;  2R82 A;  1XF1 A;  4P45 A;  1DE4 C;  2XEF A;  1Q5X A;  3GJZ A;  4C9R A;  2D0O A;  3T0T A;  4CDK A;  4MI1 A;  3VTA A;  2C6G A;  4MJX A;  3K4I A;  4C99 A;  1VI4 A;  3RBU A;  3D7F A;  5ELY A;  3TLY A;  2AUM A;  4COG A;  4NGS A;  1CS0 B;  4C8F A;  1C30 B;  4MCQ A;  2EZC A;  5K99 A;  5F1Y A;  1R61 A;  2PVW A;  3IWW A;  3S9M A;  4C84 A;  3S9N A;  3S9L A;  4OC3 A;  2EZA A;  3BXM A;  3G23 A;  2YJV A;  4M8D A;  4JZ0 A;  4P4F A;  1T36 B;  2HWG A;  3BI0 A;  4MCS A;  3SR3 A;  3FF3 A;  3SJF A;  3BI1 A;  3SJG A;  4JYW A;  4J0N A;  4TWE A;  3D7H A;  1A9X B;  3D7D A;  3KRV A;  2JBJ A;  2X0S A;  1VBG A;  4OC5 A;  5F5X A;  1BXR B;  2OR4 A;  2XEG A;  1M6V B;  1KEE B;  4NGQ A;  1Y9Z A;  4P4E A;  4TJX A;  1KC7 A;  1CE8 B;  1EZB A;  3EIF A;  3I74 A;  2PCN A;  1V6C A;  5JVL A;  3D7G A;  2EK8 A;  5FD8 A;  4P4D A;  4C9A A;  2C6C A;  4LQG A;  1KBL A;  4JVO A;  4OC1 A;  4E5S A;  3T07 A;  3TLE A;  3T5M A; 
#chains in the Genus database with same CATH homology
 2OOT A;  3K9T A;  4NGN A;  4P4B A;  4OC4 A;  4C85 A;  4C8C A;  4OC0 A;  3BHX A;  4C8T A;  2JBK A;  2CIJ A;  4C9E A;  5IB9 A;  3I6S A;  2XEI A;  4OC2 A;  4MCR A;  1Z8L A;  3IIB A;  2GP4 A;  4CDJ A;  4MCP A;  4P4J A;  4NGM A;  2PVV A;  1CX8 A;  4YN3 A;  4C8P A;  4OME A;  4NGR A;  3ICU A;  3FEC A;  1WVM A;  4P44 A;  4C9V A;  4C86 A;  3KAS A;  4P4I A;  4TJV A;  3FEE A;  2XEJ A;  5IR2 A;  4NGT A;  4C9U A;  5D29 A;  4NGP A;  5F09 A;  4X3R A;  2C6P A;  3SJX A;  4KNG E;  4C8U A;  3FED A;  3SJE A;  4W9Y A;  4C8A A;  2EK9 A;  2C5Q A;  4P45 A;  1XF1 A;  1DE4 C;  2XEF A;  4C9R A;  4CDK A;  3VTA A;  2C6G A;  4C99 A;  3RBU A;  3D7F A;  5ELY A;  4NGS A;  4C8F A;  4MCQ A;  3S9N A;  2PVW A;  3IWW A;  3S9M A;  4C84 A;  3S9L A;  4OC3 A;  3BXM A;  4JZ0 A;  4P4F A;  4MCS A;  3BI0 A;  3FF3 A;  3SJF A;  3BI1 A;  3SJG A;  4JYW A;  4TWE A;  3D7H A;  3D7D A;  2JBJ A;  4OC5 A;  2OR4 A;  2XEG A;  4NGQ A;  1Y9Z A;  4P4E A;  4TJX A;  3EIF A;  3I74 A;  1V6C A;  3D7G A;  2EK8 A;  4P4D A;  4C9A A;  2C6C A;  4LQG A;  4OC1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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