4C85A

Zebrafish znrf3 ectodomain crystal form ii
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
151
structure length
143
Chain Sequence
DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGDLYEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Danio rerio
molecule tags Ligase
total genus 36
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c85A00
3FEDA 4C9AA 1XF1A 4NGPA 4MCRA 4OMEA 3BXMA 4CDKA 4C8PA 3VTAA 3RBUA 5F09A 4YN3A 4OC1A 3S9MA 2XEIA 2XEGA 4P4JA 4P4DA 3BHXA 5ELYA 4OC2A 4C9RA 4C84A 3FECA 4TJXA 3SJFA 4MCQA 4MCSA 4W9YA 3EIFA 2OOTA 2JBJA 4C9VA 4JYWA 3KASA 4NGQA 4C8AA 4NGTA 4C99A 3BI0A 3ICUA 3D7DA 3D7GA 3I74A 4C9UA 4KNGE 3FF3A 2JBKA 4TWEA 2OR4A 5D29A 4C8UA 4TJVA 3I6SA 4MCPA 1CX8A 2EK9A 3SJGA 1V6CA 4P4IA 2XEJA 3SJEA 1DE4C 2XEFA 2CIJA 3BI1A 3SJXA 3FEEA 4P4FA 4C8CA 4OC0A 3D7FA 4P44A 3IWWA 4NGNA 4JZ0A 4OC4A 4P45A 4NGMA 3IIBA 1WVMA 4C86A 2PVVA 5IB9A 2EK8A 4C8TA 4OC5A 2C6PA 2PVWA 4X3RA 4NGRA 4C9EA 3S9NA 4NGSA 4C8FA 4OC3A 4P4BA 1Y9ZA 4P4EA 4LQGA 4CDJA 2C6GA 3S9LA 4C85A 1Z8LA 3D7HA 2C6CA
chains in the Genus database with same CATH superfamily
3FEDA 4C9AA 1R61A 1J3LA 1XF1A 4NGPA 2AUNA 4MCRA 4OMEA 2AUMA 3BXMA 4CDKA 4C8PA 3VTAA 1NBWA 2R82A 4COBA 3RBUA 2X0SA 1DIKA 5JYBA 3TLGB 5F09A 2EZCA 4YN3A 4OC1A 3S9MA 3EZEA 3SR3A 2XEIA 1VBGA 2XEGA 4P4JA 5F1YA 4P4DA 1EZBA 3K4IA 1GGOA 3TYXA 3BHXA 5ELYA 4OC2A 4C9RA 3T05A 4C84A 3FECA 2C5QA 4TJXA 5F9MA 3SJFA 1VBHA 4MCQA 4MCSA 3TLEA 4W9YA 3EIFA 3U1BA 1ZL0A 3T0TA 3KRVA 2OOTA 2JBJA 3TLYA 4C9VA 2HROA 1KC7A 4J0NA 4JYWA 3TLBA 3TLGA 4MJXA 3KASA 4NGQA 2HI6A 5F5XA 4COGA 4C8AA 1A9XB 4NGTA 2YJVA 1M6VB 4C99A 1C30B 3BI0A 3ICUA 3NOJA 4INJA 2PCNA 3D7DA 3D7GA 3I74A 4C9UA 2YJTA 4KNGE 3TLZA 1Q5XA 3FF3A 2JBKA 4TWEA 2OR4A 5D29A 4C8UA 4TJVA 3I6SA 1EZAA 4MCPA 4JVOA 2E28A 1BXRB 5IR2A 1CX8A 2EK9A 3SJGA 3T5MA 2GP4A 3T07A 1V6CA 4P4IA 2XEJA 2EZBA 4E5SA 1T36B 3SJEA 1DE4C 3TLCA 1C3OB 2XEFA 2CIJA 4EYSA 3BI1A 3SJXA 5K99A 3FEEA 5JVLA 3G23A 2D0OA 4P4FA 4C8CA 4M8DA 3GJZA 4OC0A 5FD8A 2OLSA 3D7FA 4CZ1A 1VI4A 4P44A 3IWWA 4CO9A 4H1HA 4NGNA 4JZ0A 4OC4A 4P45A 4NGMA 1ZRSA 3IIBA 1JDEA 1WVMA 4C86A 1CS0B 2PVVA 5IB9A 1ZYMA 2EK8A 4C8TA 4OC5A 2C6PA 2DIKA 2PVWA 3EZBA 4X3RA 3K9TA 4NGRA 4E94A 2B0AA 1JDBC 4C9EA 4IIXA 4MI1A 2MP0A 3S9NA 1KBLA 4NGSA 1KEEB 4OC3A 2D0PA 4C8FA 4P4BA 1Y9ZA 4P4EA 4IIYA 4LQGA 2EZAA 4CDJA 1CE8B 2C6GA 2FM4A 3S9LA 2HWGA 4C85A 1Z8LA 3EZAA 1NXJA 3D7HA 3TLAA 2C6CA 3C8OA
chains in the Genus database with same CATH topology
3FEDA 4C9AA 1XF1A 4NGPA 4MCRA 4OMEA 3BXMA 4CDKA 4C8PA 3VTAA 3RBUA 5F09A 4YN3A 4OC1A 3S9MA 2XEIA 2XEGA 4P4JA 4P4DA 3BHXA 5ELYA 4OC2A 4C9RA 4C84A 3FECA 2C5QA 4TJXA 3SJFA 4MCQA 4MCSA 4W9YA 3EIFA 2OOTA 2JBJA 4C9VA 4JYWA 3KASA 4NGQA 4C8AA 4NGTA 4C99A 3BI0A 3ICUA 3D7DA 3D7GA 3I74A 4C9UA 4KNGE 3FF3A 2JBKA 4TWEA 2OR4A 5D29A 4C8UA 4TJVA 3I6SA 4MCPA 5IR2A 1CX8A 2EK9A 3SJGA 2GP4A 1V6CA 4P4IA 2XEJA 3SJEA 1DE4C 2XEFA 2CIJA 3BI1A 3SJXA 3FEEA 4P4FA 4C8CA 4OC0A 3D7FA 4P44A 3IWWA 4NGNA 4JZ0A 4OC4A 4P45A 4NGMA 3IIBA 1WVMA 4C86A 2PVVA 5IB9A 2EK8A 4C8TA 4OC5A 2C6PA 2PVWA 4X3RA 3K9TA 4NGRA 4C9EA 3S9NA 4NGSA 4C8FA 4OC3A 4P4BA 1Y9ZA 4P4EA 4LQGA 4CDJA 2C6GA 3S9LA 4C85A 1Z8LA 3D7HA 2C6CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FED A;  4C9A A;  1XF1 A;  4NGP A;  4MCR A;  4OME A;  3BXM A;  4CDK A;  4C8P A;  3VTA A;  3RBU A;  5F09 A;  4YN3 A;  4OC1 A;  3S9M A;  2XEI A;  2XEG A;  4P4J A;  4P4D A;  3BHX A;  5ELY A;  4OC2 A;  4C9R A;  4C84 A;  3FEC A;  4TJX A;  3SJF A;  4MCQ A;  4MCS A;  4W9Y A;  3EIF A;  2OOT A;  2JBJ A;  4C9V A;  4JYW A;  3KAS A;  4NGQ A;  4C8A A;  4NGT A;  4C99 A;  3BI0 A;  3ICU A;  3D7D A;  3D7G A;  3I74 A;  4C9U A;  4KNG E;  3FF3 A;  2JBK A;  4TWE A;  2OR4 A;  5D29 A;  4C8U A;  4TJV A;  3I6S A;  4MCP A;  1CX8 A;  2EK9 A;  3SJG A;  1V6C A;  4P4I A;  2XEJ A;  3SJE A;  1DE4 C;  2XEF A;  2CIJ A;  3BI1 A;  3SJX A;  3FEE A;  4P4F A;  4C8C A;  4OC0 A;  3D7F A;  4P44 A;  3IWW A;  4NGN A;  4JZ0 A;  4OC4 A;  4P45 A;  4NGM A;  3IIB A;  1WVM A;  4C86 A;  2PVV A;  5IB9 A;  2EK8 A;  4C8T A;  4OC5 A;  2C6P A;  2PVW A;  4X3R A;  4NGR A;  4C9E A;  3S9N A;  4NGS A;  4C8F A;  4OC3 A;  4P4B A;  1Y9Z A;  4P4E A;  4LQG A;  4CDJ A;  2C6G A;  3S9L A;  4C85 A;  1Z8L A;  3D7H A;  2C6C A; 
#chains in the Genus database with same CATH topology
 3FED A;  4C9A A;  1R61 A;  1J3L A;  1XF1 A;  4NGP A;  2AUN A;  4MCR A;  4OME A;  2AUM A;  3BXM A;  4CDK A;  4C8P A;  3VTA A;  1NBW A;  2R82 A;  4COB A;  3RBU A;  2X0S A;  1DIK A;  5JYB A;  3TLG B;  5F09 A;  2EZC A;  4YN3 A;  4OC1 A;  3S9M A;  3EZE A;  3SR3 A;  2XEI A;  1VBG A;  2XEG A;  4P4J A;  5F1Y A;  4P4D A;  1EZB A;  3K4I A;  1GGO A;  3TYX A;  3BHX A;  5ELY A;  4OC2 A;  4C9R A;  3T05 A;  4C84 A;  3FEC A;  2C5Q A;  4TJX A;  5F9M A;  3SJF A;  1VBH A;  4MCQ A;  4MCS A;  3TLE A;  4W9Y A;  3EIF A;  3U1B A;  1ZL0 A;  3T0T A;  3KRV A;  2OOT A;  2JBJ A;  3TLY A;  4C9V A;  2HRO A;  1KC7 A;  4J0N A;  4JYW A;  3TLB A;  3TLG A;  4MJX A;  3KAS A;  4NGQ A;  2HI6 A;  5F5X A;  4COG A;  4C8A A;  1A9X B;  4NGT A;  2YJV A;  1M6V B;  4C99 A;  1C30 B;  3BI0 A;  3ICU A;  3NOJ A;  4INJ A;  2PCN A;  3D7D A;  3D7G A;  3I74 A;  4C9U A;  2YJT A;  4KNG E;  3TLZ A;  1Q5X A;  3FF3 A;  2JBK A;  4TWE A;  2OR4 A;  5D29 A;  4C8U A;  4TJV A;  3I6S A;  1EZA A;  4MCP A;  4JVO A;  2E28 A;  1BXR B;  5IR2 A;  1CX8 A;  2EK9 A;  3SJG A;  3T5M A;  2GP4 A;  3T07 A;  1V6C A;  4P4I A;  2XEJ A;  2EZB A;  4E5S A;  1T36 B;  3SJE A;  1DE4 C;  3TLC A;  1C3O B;  2XEF A;  2CIJ A;  4EYS A;  3BI1 A;  3SJX A;  5K99 A;  3FEE A;  5JVL A;  3G23 A;  2D0O A;  4P4F A;  4C8C A;  4M8D A;  3GJZ A;  4OC0 A;  5FD8 A;  2OLS A;  3D7F A;  4CZ1 A;  1VI4 A;  4P44 A;  3IWW A;  4CO9 A;  4H1H A;  4NGN A;  4JZ0 A;  4OC4 A;  4P45 A;  4NGM A;  1ZRS A;  3IIB A;  1JDE A;  1WVM A;  4C86 A;  1CS0 B;  2PVV A;  5IB9 A;  1ZYM A;  2EK8 A;  4C8T A;  4OC5 A;  2C6P A;  2DIK A;  2PVW A;  3EZB A;  4X3R A;  3K9T A;  4NGR A;  4E94 A;  2B0A A;  1JDB C;  4C9E A;  4IIX A;  4MI1 A;  2MP0 A;  3S9N A;  1KBL A;  4NGS A;  1KEE B;  4OC3 A;  2D0P A;  4C8F A;  4P4B A;  1Y9Z A;  4P4E A;  4IIY A;  4LQG A;  2EZA A;  4CDJ A;  1CE8 B;  2C6G A;  2FM4 A;  3S9L A;  2HWG A;  4C85 A;  1Z8L A;  3EZA A;  1NXJ A;  3D7H A;  3TLA A;  2C6C A;  3C8O A; 
#chains in the Genus database with same CATH homology
 3FED A;  4C9A A;  1XF1 A;  4NGP A;  4MCR A;  4OME A;  3BXM A;  4CDK A;  4C8P A;  3VTA A;  3RBU A;  5F09 A;  4YN3 A;  4OC1 A;  3S9M A;  2XEI A;  2XEG A;  4P4J A;  4P4D A;  3BHX A;  5ELY A;  4OC2 A;  4C9R A;  4C84 A;  3FEC A;  2C5Q A;  4TJX A;  3SJF A;  4MCQ A;  4MCS A;  4W9Y A;  3EIF A;  2OOT A;  2JBJ A;  4C9V A;  4JYW A;  3KAS A;  4NGQ A;  4C8A A;  4NGT A;  4C99 A;  3BI0 A;  3ICU A;  3D7D A;  3D7G A;  3I74 A;  4C9U A;  4KNG E;  3FF3 A;  2JBK A;  4TWE A;  2OR4 A;  5D29 A;  4C8U A;  4TJV A;  3I6S A;  4MCP A;  5IR2 A;  1CX8 A;  2EK9 A;  3SJG A;  2GP4 A;  1V6C A;  4P4I A;  2XEJ A;  3SJE A;  1DE4 C;  2XEF A;  2CIJ A;  3BI1 A;  3SJX A;  3FEE A;  4P4F A;  4C8C A;  4OC0 A;  3D7F A;  4P44 A;  3IWW A;  4NGN A;  4JZ0 A;  4OC4 A;  4P45 A;  4NGM A;  3IIB A;  1WVM A;  4C86 A;  2PVV A;  5IB9 A;  2EK8 A;  4C8T A;  4OC5 A;  2C6P A;  2PVW A;  4X3R A;  3K9T A;  4NGR A;  4C9E A;  3S9N A;  4NGS A;  4C8F A;  4OC3 A;  4P4B A;  1Y9Z A;  4P4E A;  4LQG A;  4CDJ A;  2C6G A;  3S9L A;  4C85 A;  1Z8L A;  3D7H A;  2C6C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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