4C85A

Zebrafish znrf3 ectodomain crystal form ii
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
151
structure length
143
Chain Sequence
b'DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGDLYEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Danio rerio
molecule tags Ligase
total genus 36
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c85A00
4C8TA 4C86A 3S9NA 2C6CA 3I74A 4OC5A 2OR4A 3FEDA 4NGTA 3BI0A 4TWEA 4C9VA 4TJVA 4OC0A 3BHXA 4KNGE 4NGSA 4NGPA 4C84A 4P4FA 4OMEA 4C8UA 1CX8A 4C9UA 3IWWA 4TJXA 1XF1A 2XEJA 3SJXA 4NGRA 4OC3A 4NGNA 4C8PA 4C9EA 4CDKA 4C8CA 1Y9ZA 3D7GA 3BI1A 4MCQA 2JBJA 3VTAA 4JYWA 4C8FA 1WVMA 1V6CA 4P45A 4P4JA 3S9LA 2XEGA 4LQGA 3SJGA 4CDJA 3D7HA 4YN3A 2CIJA 4P44A 4P4DA 1DE4C 5ELYA 3SJEA 3EIFA 4NGQA 2C6GA 3IIBA 4OC2A 2PVWA 3FEEA 2EK8A 4MCRA 4C99A 4C9RA 2XEIA 4MCSA 4P4EA 2JBKA 3RBUA 4C9AA 5F09A 5D29A 4NGMA 1Z8LA 2C6PA 3D7FA 4W9YA 3BXMA 3KASA 3FECA 2EK9A 3FF3A 4MCPA 4C85A 3ICUA 2OOTA 4X3RA 4C8AA 3S9MA 2XEFA 2PVVA 4OC1A 3I6SA 4OC4A 4P4IA 3SJFA 5IB9A 3D7DA 4P4BA 4JZ0A
chains in the Genus database with same CATH superfamily
3K4IA 4C8TA 4C86A 3S9NA 2C6CA 3I74A 4OC5A 2OR4A 3FEDA 4NGTA 3BI0A 3G23A 4TWEA 4C9VA 4TJVA 1GGOA 4OC0A 3BHXA 2OLSA 4KNGE 1CS0B 4NGSA 4NGPA 4C84A 4P4FA 4OMEA 2HROA 4C8UA 1C3OB 3TYXA 1CX8A 2EZCA 5IR2A 4C9UA 1ZRSA 3EZEA 4EYSA 3IWWA 4TJXA 1J3LA 1VBHA 3KRVA 1XF1A 3TLCA 1NXJA 2XEJA 3T5MA 3SJXA 1ZYMA 1T36B 1M6VB 4NGRA 4OC3A 4NGNA 1R61A 3EZAA 4C8PA 4C9EA 4CDKA 3NOJA 4C8CA 4E5SA 1VI4A 1Y9ZA 1ZL0A 3D7GA 3SR3A 3BI1A 4MCQA 2AUMA 2MP0A 4JVOA 2JBJA 3VTAA 2FM4A 1KBLA 5FD8A 4MI1A 4JYWA 4C8FA 3T07A 1WVMA 1V6CA 2X0SA 4P45A 4P4JA 4CO9A 3S9LA 2XEGA 5F1YA 5F5XA 2R82A 4LQGA 3SJGA 4CDJA 1EZBA 2HWGA 2AUNA 1JDEA 3D7HA 2C5QA 4YN3A 4E94A 2CIJA 2EZAA 2EZBA 4P44A 1BXRB 1DE4C 4P4DA 1DIKA 5ELYA 3SJEA 5JVLA 3EIFA 5K99A 3GJZA 4NGQA 2C6GA 3IIBA 4OC2A 2PVWA 3FEEA 1CE8B 1JDBC 3EZBA 3TLAA 2EK8A 4IIYA 4MCRA 4C99A 4C9RA 4COBA 4M8DA 2YJVA 2GP4A 2XEIA 4MCSA 2E28A 4P4EA 2JBKA 1EZAA 3RBUA 4C9AA 5F09A 5D29A 2YJTA 4NGMA 2PCNA 1Z8LA 3C8OA 1A9XB 2C6PA 4COGA 1Q5XA 3D7FA 1KC7A 4W9YA 4INJA 4CZ1A 3T0TA 3BXMA 3KASA 3TLGB 3FECA 2EK9A 3FF3A 4MCPA 4C85A 1C30B 2DIKA 5JYBA 3K9TA 3ICUA 2OOTA 4H1HA 4X3RA 3TLGA 3TLYA 3U1BA 4IIXA 4C8AA 3S9MA 2XEFA 2B0AA 2PVVA 4J0NA 4MJXA 4OC1A 3I6SA 3TLZA 5F9MA 3TLBA 4OC4A 4P4IA 3SJFA 1KEEB 2HI6A 5IB9A 3TLEA 2D0OA 2D0PA 3D7DA 3T05A 1NBWA 4P4BA 4JZ0A 1VBGA
chains in the Genus database with same CATH topology
4C8TA 4C86A 3S9NA 2C6CA 3I74A 4OC5A 2OR4A 3FEDA 4NGTA 3BI0A 4TWEA 4C9VA 4TJVA 4OC0A 3BHXA 4KNGE 4NGSA 4NGPA 4C84A 4P4FA 4OMEA 4C8UA 1CX8A 5IR2A 4C9UA 3IWWA 4TJXA 1XF1A 2XEJA 3SJXA 4NGRA 4OC3A 4NGNA 4C8PA 4C9EA 4CDKA 4C8CA 1Y9ZA 3D7GA 3BI1A 4MCQA 2JBJA 3VTAA 4JYWA 4C8FA 1WVMA 1V6CA 4P45A 4P4JA 3S9LA 2XEGA 4LQGA 3SJGA 4CDJA 2C5QA 3D7HA 4YN3A 2CIJA 4P44A 4P4DA 1DE4C 5ELYA 3SJEA 3EIFA 4NGQA 2C6GA 3IIBA 4OC2A 2PVWA 3FEEA 2EK8A 4MCRA 4C99A 4C9RA 2GP4A 2XEIA 4MCSA 4P4EA 2JBKA 3RBUA 4C9AA 5F09A 5D29A 4NGMA 1Z8LA 2C6PA 3D7FA 4W9YA 3BXMA 3KASA 3FECA 2EK9A 3FF3A 4MCPA 4C85A 3K9TA 3ICUA 2OOTA 4X3RA 4C8AA 3S9MA 2XEFA 2PVVA 4OC1A 3I6SA 4OC4A 4P4IA 3SJFA 5IB9A 3D7DA 4P4BA 4JZ0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C8T A;  4C86 A;  3S9N A;  2C6C A;  3I74 A;  4OC5 A;  2OR4 A;  3FED A;  4NGT A;  3BI0 A;  4TWE A;  4C9V A;  4TJV A;  4OC0 A;  3BHX A;  4KNG E;  4NGS A;  4NGP A;  4C84 A;  4P4F A;  4OME A;  4C8U A;  1CX8 A;  4C9U A;  3IWW A;  4TJX A;  1XF1 A;  2XEJ A;  3SJX A;  4NGR A;  4OC3 A;  4NGN A;  4C8P A;  4C9E A;  4CDK A;  4C8C A;  1Y9Z A;  3D7G A;  3BI1 A;  4MCQ A;  2JBJ A;  3VTA A;  4JYW A;  4C8F A;  1WVM A;  1V6C A;  4P45 A;  4P4J A;  3S9L A;  2XEG A;  4LQG A;  3SJG A;  4CDJ A;  3D7H A;  4YN3 A;  2CIJ A;  4P44 A;  4P4D A;  1DE4 C;  5ELY A;  3SJE A;  3EIF A;  4NGQ A;  2C6G A;  3IIB A;  4OC2 A;  2PVW A;  3FEE A;  2EK8 A;  4MCR A;  4C99 A;  4C9R A;  2XEI A;  4MCS A;  4P4E A;  2JBK A;  3RBU A;  4C9A A;  5F09 A;  5D29 A;  4NGM A;  1Z8L A;  2C6P A;  3D7F A;  4W9Y A;  3BXM A;  3KAS A;  3FEC A;  2EK9 A;  3FF3 A;  4MCP A;  4C85 A;  3ICU A;  2OOT A;  4X3R A;  4C8A A;  3S9M A;  2XEF A;  2PVV A;  4OC1 A;  3I6S A;  4OC4 A;  4P4I A;  3SJF A;  5IB9 A;  3D7D A;  4P4B A;  4JZ0 A; 
#chains in the Genus database with same CATH topology
 3K4I A;  4C8T A;  4C86 A;  3S9N A;  2C6C A;  3I74 A;  4OC5 A;  2OR4 A;  3FED A;  4NGT A;  3BI0 A;  3G23 A;  4TWE A;  4C9V A;  4TJV A;  1GGO A;  4OC0 A;  3BHX A;  2OLS A;  4KNG E;  1CS0 B;  4NGS A;  4NGP A;  4C84 A;  4P4F A;  4OME A;  2HRO A;  4C8U A;  1C3O B;  3TYX A;  1CX8 A;  2EZC A;  5IR2 A;  4C9U A;  1ZRS A;  3EZE A;  4EYS A;  3IWW A;  4TJX A;  1J3L A;  1VBH A;  3KRV A;  1XF1 A;  3TLC A;  1NXJ A;  2XEJ A;  3T5M A;  3SJX A;  1ZYM A;  1T36 B;  1M6V B;  4NGR A;  4OC3 A;  4NGN A;  1R61 A;  3EZA A;  4C8P A;  4C9E A;  4CDK A;  3NOJ A;  4C8C A;  4E5S A;  1VI4 A;  1Y9Z A;  1ZL0 A;  3D7G A;  3SR3 A;  3BI1 A;  4MCQ A;  2AUM A;  2MP0 A;  4JVO A;  2JBJ A;  3VTA A;  2FM4 A;  1KBL A;  5FD8 A;  4MI1 A;  4JYW A;  4C8F A;  3T07 A;  1WVM A;  1V6C A;  2X0S A;  4P45 A;  4P4J A;  4CO9 A;  3S9L A;  2XEG A;  5F1Y A;  5F5X A;  2R82 A;  4LQG A;  3SJG A;  4CDJ A;  1EZB A;  2HWG A;  2AUN A;  1JDE A;  3D7H A;  2C5Q A;  4YN3 A;  4E94 A;  2CIJ A;  2EZA A;  2EZB A;  4P44 A;  1BXR B;  1DE4 C;  4P4D A;  1DIK A;  5ELY A;  3SJE A;  5JVL A;  3EIF A;  5K99 A;  3GJZ A;  4NGQ A;  2C6G A;  3IIB A;  4OC2 A;  2PVW A;  3FEE A;  1CE8 B;  1JDB C;  3EZB A;  3TLA A;  2EK8 A;  4IIY A;  4MCR A;  4C99 A;  4C9R A;  4COB A;  4M8D A;  2YJV A;  2GP4 A;  2XEI A;  4MCS A;  2E28 A;  4P4E A;  2JBK A;  1EZA A;  3RBU A;  4C9A A;  5F09 A;  5D29 A;  2YJT A;  4NGM A;  2PCN A;  1Z8L A;  3C8O A;  1A9X B;  2C6P A;  4COG A;  1Q5X A;  3D7F A;  1KC7 A;  4W9Y A;  4INJ A;  4CZ1 A;  3T0T A;  3BXM A;  3KAS A;  3TLG B;  3FEC A;  2EK9 A;  3FF3 A;  4MCP A;  4C85 A;  1C30 B;  2DIK A;  5JYB A;  3K9T A;  3ICU A;  2OOT A;  4H1H A;  4X3R A;  3TLG A;  3TLY A;  3U1B A;  4IIX A;  4C8A A;  3S9M A;  2XEF A;  2B0A A;  2PVV A;  4J0N A;  4MJX A;  4OC1 A;  3I6S A;  3TLZ A;  5F9M A;  3TLB A;  4OC4 A;  4P4I A;  3SJF A;  1KEE B;  2HI6 A;  5IB9 A;  3TLE A;  2D0O A;  2D0P A;  3D7D A;  3T05 A;  1NBW A;  4P4B A;  4JZ0 A;  1VBG A; 
#chains in the Genus database with same CATH homology
 4C8T A;  4C86 A;  3S9N A;  2C6C A;  3I74 A;  4OC5 A;  2OR4 A;  3FED A;  4NGT A;  3BI0 A;  4TWE A;  4C9V A;  4TJV A;  4OC0 A;  3BHX A;  4KNG E;  4NGS A;  4NGP A;  4C84 A;  4P4F A;  4OME A;  4C8U A;  1CX8 A;  5IR2 A;  4C9U A;  3IWW A;  4TJX A;  1XF1 A;  2XEJ A;  3SJX A;  4NGR A;  4OC3 A;  4NGN A;  4C8P A;  4C9E A;  4CDK A;  4C8C A;  1Y9Z A;  3D7G A;  3BI1 A;  4MCQ A;  2JBJ A;  3VTA A;  4JYW A;  4C8F A;  1WVM A;  1V6C A;  4P45 A;  4P4J A;  3S9L A;  2XEG A;  4LQG A;  3SJG A;  4CDJ A;  2C5Q A;  3D7H A;  4YN3 A;  2CIJ A;  4P44 A;  4P4D A;  1DE4 C;  5ELY A;  3SJE A;  3EIF A;  4NGQ A;  2C6G A;  3IIB A;  4OC2 A;  2PVW A;  3FEE A;  2EK8 A;  4MCR A;  4C99 A;  4C9R A;  2GP4 A;  2XEI A;  4MCS A;  4P4E A;  2JBK A;  3RBU A;  4C9A A;  5F09 A;  5D29 A;  4NGM A;  1Z8L A;  2C6P A;  3D7F A;  4W9Y A;  3BXM A;  3KAS A;  3FEC A;  2EK9 A;  3FF3 A;  4MCP A;  4C85 A;  3K9T A;  3ICU A;  2OOT A;  4X3R A;  4C8A A;  3S9M A;  2XEF A;  2PVV A;  4OC1 A;  3I6S A;  4OC4 A;  4P4I A;  3SJF A;  5IB9 A;  3D7D A;  4P4B A;  4JZ0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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