4C85A

Zebrafish znrf3 ectodomain crystal form ii
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
151
structure length
143
Chain Sequence
DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGDLYEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Danio rerio
total genus 36
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c85A00
2EK9A 4X3RA 2EK8A 4OC1A 3D7GA 1WVMA 4NGMA 3FECA 4W9YA 4C9RA 4P4IA 4C99A 3I74A 4P45A 1DE4C 2XEGA 4MCSA 4TJVA 3S9MA 4P44A 2XEIA 1CX8A 2C6GA 4P4JA 1V6CA 4C8PA 4C9UA 4P4BA 4C8TA 3S9NA 4NGNA 4JZ0A 4C84A 4NGQA 3I6SA 1XF1A 4TWEA 4CDJA 2XEFA 4C9EA 4C8AA 3S9LA 2CIJA 3EIFA 4C8CA 3BI1A 4MCQA 3IWWA 3SJEA 4OC5A 4P4EA 4MCPA 3KASA 4OMEA 4C8FA 4LQGA 4OC4A 3D7HA 3BHXA 4P4FA 2OR4A 4NGSA 4C86A 3SJXA 3FEDA 4OC3A 4CDKA 5ELYA 5F09A 4OC2A 3D7FA 2C6PA 2OOTA 4C8UA 2C6CA 2JBJA 4OC0A 5IB9A 2PVWA 3RBUA 4YN3A 3FEEA 2JBKA 4NGTA 4C9AA 4C85A 4TJXA 4P4DA 2XEJA 3FF3A 3BI0A 4NGRA 2PVVA 4C9VA 3SJGA 3IIBA 4NGPA 3BXMA 1Y9ZA 3D7DA 3SJFA 4KNGE 3VTAA 3ICUA 5D29A 4JYWA 1Z8LA 4MCRA
chains in the Genus database with same CATH superfamily
2EK9A 4X3RA 2MP0A 2EK8A 4OC1A 4MI1A 3D7GA 3EZEA 3TYXA 4JVOA 1WVMA 4NGMA 3T0TA 3FECA 3C8OA 3KRVA 4W9YA 4C9RA 4P4IA 4C99A 3I74A 4IIXA 3T5MA 4P45A 1DE4C 2XEGA 4MCSA 2R82A 4TJVA 3G23A 3S9MA 2E28A 3SR3A 4P44A 2XEIA 1CX8A 2C6GA 4IIYA 1JDBC 5F1YA 1EZBA 4E94A 4M8DA 1V6CA 4P4JA 4C8PA 3EZAA 4C9UA 4P4BA 4C8TA 3S9NA 4NGNA 4JZ0A 1ZL0A 3NOJA 4C84A 2EZBA 2D0PA 4NGQA 3I6SA 1XF1A 4TWEA 3T07A 2X0SA 4CDJA 2OLSA 1C30B 2XEFA 4C9EA 3TLCA 4C8AA 2B0AA 3S9LA 5IR2A 2CIJA 3EIFA 1VI4A 3TLBA 1JDEA 1R61A 3U1BA 1NXJA 5F5XA 3EZBA 4C8CA 3BI1A 1A9XB 4MCQA 1T36B 2YJTA 2D0OA 4MJXA 1EZAA 4INJA 3IWWA 1Q5XA 1BXRB 4OC5A 3SJEA 5FD8A 4P4EA 3TLGA 4MCPA 1CE8B 3KASA 4OMEA 4C8FA 2AUNA 4LQGA 1KEEB 4OC4A 3D7HA 3BHXA 4P4FA 2OR4A 3T05A 4NGSA 4C86A 4CZ1A 3SJXA 3TLEA 3FEDA 1J3LA 4COBA 4E5SA 2EZAA 4OC3A 4CDKA 5ELYA 2C5QA 4CO9A 1ZRSA 1M6VB 5F09A 4OC2A 4EYSA 3D7FA 4H1HA 2C6PA 2OOTA 1ZYMA 4C8UA 2C6CA 3TLAA 5K99A 2YJVA 4COGA 2GP4A 2JBJA 4OC0A 5IB9A 2PVWA 3RBUA 4YN3A 1KBLA 3FEEA 2JBKA 4NGTA 2DIKA 2HWGA 1DIKA 3TLZA 1CS0B 4C9AA 5JVLA 4C85A 2FM4A 1C3OB 4TJXA 4J0NA 1GGOA 2PCNA 2XEJA 3FF3A 4P4DA 5F9MA 3TLGB 1VBGA 3BI0A 1KC7A 4NGRA 5JYBA 2EZCA 2PVVA 1VBHA 3TLYA 3K4IA 2HROA 4C9VA 3SJGA 3GJZA 3IIBA 2AUMA 4NGPA 2HI6A 3K9TA 3BXMA 1Y9ZA 3D7DA 3SJFA 4KNGE 3VTAA 3ICUA 5D29A 1NBWA 4JYWA 1Z8LA 4MCRA
chains in the Genus database with same CATH topology
2EK9A 4X3RA 2EK8A 4OC1A 3D7GA 1WVMA 4NGMA 3FECA 4W9YA 4C9RA 4P4IA 4C99A 3I74A 4P45A 1DE4C 2XEGA 4MCSA 4TJVA 3S9MA 4P44A 2XEIA 1CX8A 2C6GA 4P4JA 1V6CA 4C8PA 4C9UA 4P4BA 4C8TA 3S9NA 4NGNA 4JZ0A 4C84A 4NGQA 3I6SA 1XF1A 4TWEA 4CDJA 2XEFA 4C9EA 4C8AA 3S9LA 5IR2A 2CIJA 3EIFA 4C8CA 3BI1A 4MCQA 3IWWA 3SJEA 4OC5A 4P4EA 4MCPA 3KASA 4OMEA 4C8FA 4LQGA 4OC4A 3D7HA 3BHXA 4P4FA 2OR4A 4NGSA 4C86A 3SJXA 3FEDA 4OC3A 4CDKA 5ELYA 2C5QA 5F09A 4OC2A 3D7FA 2C6PA 2OOTA 4C8UA 2C6CA 2GP4A 2JBJA 4OC0A 5IB9A 2PVWA 3RBUA 4YN3A 3FEEA 2JBKA 4NGTA 4C9AA 4C85A 4TJXA 4P4DA 2XEJA 3FF3A 3BI0A 4NGRA 2PVVA 4C9VA 3SJGA 3IIBA 4NGPA 3K9TA 3BXMA 1Y9ZA 3D7DA 3SJFA 4KNGE 3VTAA 3ICUA 5D29A 4JYWA 1Z8LA 4MCRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EK9 A;  4X3R A;  2EK8 A;  4OC1 A;  3D7G A;  1WVM A;  4NGM A;  3FEC A;  4W9Y A;  4C9R A;  4P4I A;  4C99 A;  3I74 A;  4P45 A;  1DE4 C;  2XEG A;  4MCS A;  4TJV A;  3S9M A;  4P44 A;  2XEI A;  1CX8 A;  2C6G A;  4P4J A;  1V6C A;  4C8P A;  4C9U A;  4P4B A;  4C8T A;  3S9N A;  4NGN A;  4JZ0 A;  4C84 A;  4NGQ A;  3I6S A;  1XF1 A;  4TWE A;  4CDJ A;  2XEF A;  4C9E A;  4C8A A;  3S9L A;  2CIJ A;  3EIF A;  4C8C A;  3BI1 A;  4MCQ A;  3IWW A;  3SJE A;  4OC5 A;  4P4E A;  4MCP A;  3KAS A;  4OME A;  4C8F A;  4LQG A;  4OC4 A;  3D7H A;  3BHX A;  4P4F A;  2OR4 A;  4NGS A;  4C86 A;  3SJX A;  3FED A;  4OC3 A;  4CDK A;  5ELY A;  5F09 A;  4OC2 A;  3D7F A;  2C6P A;  2OOT A;  4C8U A;  2C6C A;  2JBJ A;  4OC0 A;  5IB9 A;  2PVW A;  3RBU A;  4YN3 A;  3FEE A;  2JBK A;  4NGT A;  4C9A A;  4C85 A;  4TJX A;  4P4D A;  2XEJ A;  3FF3 A;  3BI0 A;  4NGR A;  2PVV A;  4C9V A;  3SJG A;  3IIB A;  4NGP A;  3BXM A;  1Y9Z A;  3D7D A;  3SJF A;  4KNG E;  3VTA A;  3ICU A;  5D29 A;  4JYW A;  1Z8L A;  4MCR A; 
#chains in the Genus database with same CATH topology
 2EK9 A;  4X3R A;  2MP0 A;  2EK8 A;  4OC1 A;  4MI1 A;  3D7G A;  3EZE A;  3TYX A;  4JVO A;  1WVM A;  4NGM A;  3T0T A;  3FEC A;  3C8O A;  3KRV A;  4W9Y A;  4C9R A;  4P4I A;  4C99 A;  3I74 A;  4IIX A;  3T5M A;  4P45 A;  1DE4 C;  2XEG A;  4MCS A;  2R82 A;  4TJV A;  3G23 A;  3S9M A;  2E28 A;  3SR3 A;  4P44 A;  2XEI A;  1CX8 A;  2C6G A;  4IIY A;  1JDB C;  5F1Y A;  1EZB A;  4E94 A;  4M8D A;  1V6C A;  4P4J A;  4C8P A;  3EZA A;  4C9U A;  4P4B A;  4C8T A;  3S9N A;  4NGN A;  4JZ0 A;  1ZL0 A;  3NOJ A;  4C84 A;  2EZB A;  2D0P A;  4NGQ A;  3I6S A;  1XF1 A;  4TWE A;  3T07 A;  2X0S A;  4CDJ A;  2OLS A;  1C30 B;  2XEF A;  4C9E A;  3TLC A;  4C8A A;  2B0A A;  3S9L A;  5IR2 A;  2CIJ A;  3EIF A;  1VI4 A;  3TLB A;  1JDE A;  1R61 A;  3U1B A;  1NXJ A;  5F5X A;  3EZB A;  4C8C A;  3BI1 A;  1A9X B;  4MCQ A;  1T36 B;  2YJT A;  2D0O A;  4MJX A;  1EZA A;  4INJ A;  3IWW A;  1Q5X A;  1BXR B;  4OC5 A;  3SJE A;  5FD8 A;  4P4E A;  3TLG A;  4MCP A;  1CE8 B;  3KAS A;  4OME A;  4C8F A;  2AUN A;  4LQG A;  1KEE B;  4OC4 A;  3D7H A;  3BHX A;  4P4F A;  2OR4 A;  3T05 A;  4NGS A;  4C86 A;  4CZ1 A;  3SJX A;  3TLE A;  3FED A;  1J3L A;  4COB A;  4E5S A;  2EZA A;  4OC3 A;  4CDK A;  5ELY A;  2C5Q A;  4CO9 A;  1ZRS A;  1M6V B;  5F09 A;  4OC2 A;  4EYS A;  3D7F A;  4H1H A;  2C6P A;  2OOT A;  1ZYM A;  4C8U A;  2C6C A;  3TLA A;  5K99 A;  2YJV A;  4COG A;  2GP4 A;  2JBJ A;  4OC0 A;  5IB9 A;  2PVW A;  3RBU A;  4YN3 A;  1KBL A;  3FEE A;  2JBK A;  4NGT A;  2DIK A;  2HWG A;  1DIK A;  3TLZ A;  1CS0 B;  4C9A A;  5JVL A;  4C85 A;  2FM4 A;  1C3O B;  4TJX A;  4J0N A;  1GGO A;  2PCN A;  2XEJ A;  3FF3 A;  4P4D A;  5F9M A;  3TLG B;  1VBG A;  3BI0 A;  1KC7 A;  4NGR A;  5JYB A;  2EZC A;  2PVV A;  1VBH A;  3TLY A;  3K4I A;  2HRO A;  4C9V A;  3SJG A;  3GJZ A;  3IIB A;  2AUM A;  4NGP A;  2HI6 A;  3K9T A;  3BXM A;  1Y9Z A;  3D7D A;  3SJF A;  4KNG E;  3VTA A;  3ICU A;  5D29 A;  1NBW A;  4JYW A;  1Z8L A;  4MCR A; 
#chains in the Genus database with same CATH homology
 2EK9 A;  4X3R A;  2EK8 A;  4OC1 A;  3D7G A;  1WVM A;  4NGM A;  3FEC A;  4W9Y A;  4C9R A;  4P4I A;  4C99 A;  3I74 A;  4P45 A;  1DE4 C;  2XEG A;  4MCS A;  4TJV A;  3S9M A;  4P44 A;  2XEI A;  1CX8 A;  2C6G A;  4P4J A;  1V6C A;  4C8P A;  4C9U A;  4P4B A;  4C8T A;  3S9N A;  4NGN A;  4JZ0 A;  4C84 A;  4NGQ A;  3I6S A;  1XF1 A;  4TWE A;  4CDJ A;  2XEF A;  4C9E A;  4C8A A;  3S9L A;  5IR2 A;  2CIJ A;  3EIF A;  4C8C A;  3BI1 A;  4MCQ A;  3IWW A;  3SJE A;  4OC5 A;  4P4E A;  4MCP A;  3KAS A;  4OME A;  4C8F A;  4LQG A;  4OC4 A;  3D7H A;  3BHX A;  4P4F A;  2OR4 A;  4NGS A;  4C86 A;  3SJX A;  3FED A;  4OC3 A;  4CDK A;  5ELY A;  2C5Q A;  5F09 A;  4OC2 A;  3D7F A;  2C6P A;  2OOT A;  4C8U A;  2C6C A;  2GP4 A;  2JBJ A;  4OC0 A;  5IB9 A;  2PVW A;  3RBU A;  4YN3 A;  3FEE A;  2JBK A;  4NGT A;  4C9A A;  4C85 A;  4TJX A;  4P4D A;  2XEJ A;  3FF3 A;  3BI0 A;  4NGR A;  2PVV A;  4C9V A;  3SJG A;  3IIB A;  4NGP A;  3K9T A;  3BXM A;  1Y9Z A;  3D7D A;  3SJF A;  4KNG E;  3VTA A;  3ICU A;  5D29 A;  4JYW A;  1Z8L A;  4MCR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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