4C85A

Zebrafish znrf3 ectodomain crystal form ii
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
151
structure length
143
Chain Sequence
DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGDLYEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Danio rerio
molecule tags Ligase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
total genus 36
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c85A00
4TWEA 3FEDA 2C6GA 4NGNA 4C8PA 3SJEA 3S9NA 4P4IA 2OOTA 4C8FA 3FF3A 3IIBA 4CDJA 2CIJA 2XEFA 3S9LA 3BI0A 4X3RA 3D7FA 4P4BA 4C9AA 2XEJA 1XF1A 4C9VA 4NGRA 2XEIA 4OC4A 4P4JA 3VTAA 3BXMA 3I74A 4NGSA 4OC2A 3SJFA 4P44A 1CX8A 2XEGA 4C8TA 3EIFA 4JZ0A 4CDKA 3SJXA 4OC5A 4OMEA 2PVVA 4KNGE 2PVWA 4TJXA 4MCPA 2OR4A 4C9EA 4P45A 3S9MA 4C8CA 5ELYA 4C84A 2C6PA 3FEEA 4C8UA 4OC1A 3BI1A 4C86A 3RBUA 4C8AA 2JBKA 3BHXA 2JBJA 4P4EA 4W9YA 4P4FA 3D7HA 4C9UA 3KASA 4OC0A 4LQGA 5IB9A 4TJVA 4NGQA 3ICUA 1V6CA 1Z8LA 4C85A 4P4DA 2C6CA 3D7DA 4MCRA 3D7GA 3IWWA 4MCSA 4OC3A 4JYWA 5D29A 2EK9A 4NGMA 1WVMA 4C9RA 4NGPA 1DE4C 3FECA 4NGTA 3SJGA 2EK8A 4C99A 1Y9ZA 3I6SA 4YN3A 4MCQA 5F09A
chains in the Genus database with same CATH superfamily
1JDBC 4TWEA 3G23A 2X0SA 1VI4A 4IIXA 3FEDA 2C6GA 4NGNA 4C8PA 3SJEA 3S9NA 4CO9A 3K9TA 1ZYMA 4P4IA 4J0NA 1EZBA 1NXJA 2OOTA 4C8FA 3FF3A 3IIBA 1R61A 4CDJA 3T5MA 4E5SA 2CIJA 2EZBA 5F5XA 3T05A 1JDEA 2XEFA 1A9XB 3S9LA 3BI0A 1ZRSA 4X3RA 3D7FA 4P4BA 4C9AA 1VBGA 2XEJA 4COBA 1XF1A 3EZEA 1KBLA 3GJZA 4C9VA 2XEIA 4NGRA 4OC4A 4P4JA 4MI1A 4EYSA 3EZBA 3VTAA 4E94A 5F09A 2PCNA 3BXMA 3I74A 2FM4A 4NGSA 1VBHA 4OC2A 3SJFA 2E28A 4P44A 3TLBA 1T36B 1C30B 5F9MA 3TLZA 1CX8A 3NOJA 2D0PA 2XEGA 4C8TA 3TLYA 2GP4A 1M6VB 5IR2A 1ZL0A 3EIFA 4JZ0A 3TLGA 4JVOA 3SJXA 2EZAA 3KRVA 4CDKA 4OC5A 4MJXA 4OMEA 2PVVA 5JYBA 2HI6A 4KNGE 1EZAA 2PVWA 4H1HA 4TJXA 2AUMA 2OR4A 4MCPA 5FD8A 4C9EA 3TYXA 4P45A 3S9MA 4C8CA 2YJTA 5ELYA 4INJA 1Q5XA 4C84A 3EZAA 2C6PA 1DIKA 3FEEA 4C8UA 2AUNA 4OC1A 2B0AA 3BI1A 1BXRB 4C86A 3RBUA 4C8AA 5F1YA 2D0OA 2JBKA 1C3OB 3BHXA 1CE8B 2YJVA 2JBJA 4P4EA 4W9YA 4P4FA 1NBWA 3D7HA 4C9UA 3U1BA 3KASA 4OC0A 3TLCA 4LQGA 5IB9A 1GGOA 2C5QA 4NGQA 3ICUA 1V6CA 4TJVA 1Z8LA 4CZ1A 4C85A 3T07A 3TLAA 4P4DA 3T0TA 2C6CA 3D7DA 2EZCA 2HWGA 4MCRA 3TLEA 3D7GA 3IWWA 4MCSA 2OLSA 4OC3A 4JYWA 5D29A 1J3LA 3TLGB 2EK9A 1KC7A 3SR3A 4NGMA 2MP0A 1WVMA 4C9RA 4NGPA 1DE4C 3FECA 3K4IA 1CS0B 2DIKA 4NGTA 5K99A 4IIYA 2EK8A 3SJGA 1KEEB 2HROA 4C99A 2R82A 3C8OA 1Y9ZA 3I6SA 4YN3A 4MCQA 5JVLA 4M8DA 4COGA
chains in the Genus database with same CATH topology
4TWEA 3FEDA 2C6GA 4NGNA 4C8PA 3SJEA 3S9NA 3K9TA 4P4IA 2OOTA 4C8FA 3FF3A 3IIBA 4CDJA 2CIJA 2XEFA 3S9LA 3BI0A 4X3RA 3D7FA 4P4BA 4C9AA 2XEJA 1XF1A 4C9VA 4NGRA 2XEIA 4OC4A 4P4JA 3VTAA 3BXMA 3I74A 4NGSA 4OC2A 3SJFA 4P44A 1CX8A 2XEGA 4C8TA 2GP4A 5IR2A 3EIFA 4JZ0A 4CDKA 3SJXA 4OC5A 4OMEA 2PVVA 4KNGE 2PVWA 4TJXA 4MCPA 2OR4A 4C9EA 4P45A 3S9MA 4C8CA 5ELYA 4C84A 2C6PA 3FEEA 4C8UA 4OC1A 3BI1A 4C86A 3RBUA 4C8AA 2JBKA 3BHXA 2JBJA 4P4EA 4W9YA 4P4FA 3D7HA 4C9UA 3KASA 4OC0A 4LQGA 5IB9A 4TJVA 4NGQA 2C5QA 3ICUA 1V6CA 1Z8LA 4C85A 4P4DA 2C6CA 3D7DA 4MCRA 3D7GA 3IWWA 4MCSA 4OC3A 4JYWA 5D29A 2EK9A 4NGMA 1WVMA 4C9RA 4NGPA 1DE4C 3FECA 4NGTA 3SJGA 2EK8A 4C99A 1Y9ZA 3I6SA 4YN3A 4MCQA 5F09A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TWE A;  3FED A;  2C6G A;  4NGN A;  4C8P A;  3SJE A;  3S9N A;  4P4I A;  2OOT A;  4C8F A;  3FF3 A;  3IIB A;  4CDJ A;  2CIJ A;  2XEF A;  3S9L A;  3BI0 A;  4X3R A;  3D7F A;  4P4B A;  4C9A A;  2XEJ A;  1XF1 A;  4C9V A;  4NGR A;  2XEI A;  4OC4 A;  4P4J A;  3VTA A;  3BXM A;  3I74 A;  4NGS A;  4OC2 A;  3SJF A;  4P44 A;  1CX8 A;  2XEG A;  4C8T A;  3EIF A;  4JZ0 A;  4CDK A;  3SJX A;  4OC5 A;  4OME A;  2PVV A;  4KNG E;  2PVW A;  4TJX A;  4MCP A;  2OR4 A;  4C9E A;  4P45 A;  3S9M A;  4C8C A;  5ELY A;  4C84 A;  2C6P A;  3FEE A;  4C8U A;  4OC1 A;  3BI1 A;  4C86 A;  3RBU A;  4C8A A;  2JBK A;  3BHX A;  2JBJ A;  4P4E A;  4W9Y A;  4P4F A;  3D7H A;  4C9U A;  3KAS A;  4OC0 A;  4LQG A;  5IB9 A;  4TJV A;  4NGQ A;  3ICU A;  1V6C A;  1Z8L A;  4C85 A;  4P4D A;  2C6C A;  3D7D A;  4MCR A;  3D7G A;  3IWW A;  4MCS A;  4OC3 A;  4JYW A;  5D29 A;  2EK9 A;  4NGM A;  1WVM A;  4C9R A;  4NGP A;  1DE4 C;  3FEC A;  4NGT A;  3SJG A;  2EK8 A;  4C99 A;  1Y9Z A;  3I6S A;  4YN3 A;  4MCQ A;  5F09 A; 
#chains in the Genus database with same CATH topology
 1JDB C;  4TWE A;  3G23 A;  2X0S A;  1VI4 A;  4IIX A;  3FED A;  2C6G A;  4NGN A;  4C8P A;  3SJE A;  3S9N A;  4CO9 A;  3K9T A;  1ZYM A;  4P4I A;  4J0N A;  1EZB A;  1NXJ A;  2OOT A;  4C8F A;  3FF3 A;  3IIB A;  1R61 A;  4CDJ A;  3T5M A;  4E5S A;  2CIJ A;  2EZB A;  5F5X A;  3T05 A;  1JDE A;  2XEF A;  1A9X B;  3S9L A;  3BI0 A;  1ZRS A;  4X3R A;  3D7F A;  4P4B A;  4C9A A;  1VBG A;  2XEJ A;  4COB A;  1XF1 A;  3EZE A;  1KBL A;  3GJZ A;  4C9V A;  2XEI A;  4NGR A;  4OC4 A;  4P4J A;  4MI1 A;  4EYS A;  3EZB A;  3VTA A;  4E94 A;  5F09 A;  2PCN A;  3BXM A;  3I74 A;  2FM4 A;  4NGS A;  1VBH A;  4OC2 A;  3SJF A;  2E28 A;  4P44 A;  3TLB A;  1T36 B;  1C30 B;  5F9M A;  3TLZ A;  1CX8 A;  3NOJ A;  2D0P A;  2XEG A;  4C8T A;  3TLY A;  2GP4 A;  1M6V B;  5IR2 A;  1ZL0 A;  3EIF A;  4JZ0 A;  3TLG A;  4JVO A;  3SJX A;  2EZA A;  3KRV A;  4CDK A;  4OC5 A;  4MJX A;  4OME A;  2PVV A;  5JYB A;  2HI6 A;  4KNG E;  1EZA A;  2PVW A;  4H1H A;  4TJX A;  2AUM A;  2OR4 A;  4MCP A;  5FD8 A;  4C9E A;  3TYX A;  4P45 A;  3S9M A;  4C8C A;  2YJT A;  5ELY A;  4INJ A;  1Q5X A;  4C84 A;  3EZA A;  2C6P A;  1DIK A;  3FEE A;  4C8U A;  2AUN A;  4OC1 A;  2B0A A;  3BI1 A;  1BXR B;  4C86 A;  3RBU A;  4C8A A;  5F1Y A;  2D0O A;  2JBK A;  1C3O B;  3BHX A;  1CE8 B;  2YJV A;  2JBJ A;  4P4E A;  4W9Y A;  4P4F A;  1NBW A;  3D7H A;  4C9U A;  3U1B A;  3KAS A;  4OC0 A;  3TLC A;  4LQG A;  5IB9 A;  1GGO A;  2C5Q A;  4NGQ A;  3ICU A;  1V6C A;  4TJV A;  1Z8L A;  4CZ1 A;  4C85 A;  3T07 A;  3TLA A;  4P4D A;  3T0T A;  2C6C A;  3D7D A;  2EZC A;  2HWG A;  4MCR A;  3TLE A;  3D7G A;  3IWW A;  4MCS A;  2OLS A;  4OC3 A;  4JYW A;  5D29 A;  1J3L A;  3TLG B;  2EK9 A;  1KC7 A;  3SR3 A;  4NGM A;  2MP0 A;  1WVM A;  4C9R A;  4NGP A;  1DE4 C;  3FEC A;  3K4I A;  1CS0 B;  2DIK A;  4NGT A;  5K99 A;  4IIY A;  2EK8 A;  3SJG A;  1KEE B;  2HRO A;  4C99 A;  2R82 A;  3C8O A;  1Y9Z A;  3I6S A;  4YN3 A;  4MCQ A;  5JVL A;  4M8D A;  4COG A; 
#chains in the Genus database with same CATH homology
 4TWE A;  3FED A;  2C6G A;  4NGN A;  4C8P A;  3SJE A;  3S9N A;  3K9T A;  4P4I A;  2OOT A;  4C8F A;  3FF3 A;  3IIB A;  4CDJ A;  2CIJ A;  2XEF A;  3S9L A;  3BI0 A;  4X3R A;  3D7F A;  4P4B A;  4C9A A;  2XEJ A;  1XF1 A;  4C9V A;  4NGR A;  2XEI A;  4OC4 A;  4P4J A;  3VTA A;  3BXM A;  3I74 A;  4NGS A;  4OC2 A;  3SJF A;  4P44 A;  1CX8 A;  2XEG A;  4C8T A;  2GP4 A;  5IR2 A;  3EIF A;  4JZ0 A;  4CDK A;  3SJX A;  4OC5 A;  4OME A;  2PVV A;  4KNG E;  2PVW A;  4TJX A;  4MCP A;  2OR4 A;  4C9E A;  4P45 A;  3S9M A;  4C8C A;  5ELY A;  4C84 A;  2C6P A;  3FEE A;  4C8U A;  4OC1 A;  3BI1 A;  4C86 A;  3RBU A;  4C8A A;  2JBK A;  3BHX A;  2JBJ A;  4P4E A;  4W9Y A;  4P4F A;  3D7H A;  4C9U A;  3KAS A;  4OC0 A;  4LQG A;  5IB9 A;  4TJV A;  4NGQ A;  2C5Q A;  3ICU A;  1V6C A;  1Z8L A;  4C85 A;  4P4D A;  2C6C A;  3D7D A;  4MCR A;  3D7G A;  3IWW A;  4MCS A;  4OC3 A;  4JYW A;  5D29 A;  2EK9 A;  4NGM A;  1WVM A;  4C9R A;  4NGP A;  1DE4 C;  3FEC A;  4NGT A;  3SJG A;  2EK8 A;  4C99 A;  1Y9Z A;  3I6S A;  4YN3 A;  4MCQ A;  5F09 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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