4M8DA

Crystal structure of an isatin hydrolase bound to product analogue thioisatinate
Total Genus 78
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
262
structure length
262
Chain Sequence
MSAQSALSGLGAKLLSGEVEVVDCTGVLGPNTPILQLPPDFAKNTPKVEIHKISEYDSDGPFFAWNWMVLGEHSGTHFDAPHHWITGKDYSDGFTDTLDVQRLIAPVNVIDCSKESAADPDFLLTADLIKAWEAEHGEIGAGEWVVMRTDWDKRAGDEAAFLNADETGPHSPGPTPDAIEYLLSKKIVGWGSQCIGTDAGQAGGMEPPFPAHNLLHRDNCFGLASLANLDKLPAKGAILIAAPLKIERGTGSPIRALALVPK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Putative uncharacterized protein
publication title A proton wire and water channel revealed in the crystal structure of isatin hydrolase.
pubmed doi rcsb
source organism Labrenzia aggregata
total genus 78
structure length 262
sequence length 262
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 3.5.2.20: Isatin hydrolase.
pdb deposition date 2013-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 4m8dA00
4M8DA 4J0NA 4CO9A 4COGA 1R61A 4CZ1A 4COBA 3KRVA 2B0AA
chains in the Genus database with same CATH superfamily
2HI6A 4CO9A 2YJTA 4P4JA 4JVOA 1BXRB 4KNGE 4P4EA 4P4IA 1NXJA 3KRVA 2C5QA 3EZAA 4NGSA 1KBLA 4MI1A 4P4BA 3IIBA 2XEJA 3I6SA 3TLEA 4C8TA 2PVVA 1CE8B 4OC4A 5JVLA 3TLBA 4NGPA 1JDEA 4NGRA 4EYSA 3U1BA 1VBHA 4NGNA 3S9MA 4E94A 2CIJA 1DE4C 3EZBA 4C86A 3D7DA 4OC5A 3TLGB 2C6GA 1C3OB 3TLGA 2PCNA 3K9TA 4OC3A 4OC2A 2DIKA 4TWEA 2PVWA 3ICUA 4C99A 3FEDA 3SJXA 1GGOA 2EK9A 2EZBA 1ZRSA 2C6CA 3C8OA 3T5MA 3TYXA 5K99A 4INJA 3VTAA 5IR2A 4CZ1A 4C8FA 2AUMA 3TLZA 4M8DA 2EK8A 4COGA 4E5SA 1V6CA 3IWWA 2OLSA 4C9RA 1VBGA 3KASA 3EZEA 3FEEA 4C8UA 4MCSA 3I74A 4JZ0A 1JDBC 3SJEA 4C9EA 4CDKA 3SR3A 1J3LA 2JBJA 3D7HA 3BXMA 3T0TA 3BHXA 5ELYA 4MCRA 3SJGA 3S9LA 2D0PA 4IIYA 2R82A 1VI4A 1CX8A 2GP4A 3GJZA 2AUNA 5FD8A 2D0OA 5D29A 4C9VA 2XEFA 4C84A 5F09A 4CDJA 3D7FA 2OR4A 1KEEB 2MP0A 5F1YA 1EZAA 2FM4A 4W9YA 3T07A 3RBUA 4MCPA 1EZBA 5F5XA 4NGMA 5IB9A 4COBA 2B0AA 4C9AA 4LQGA 3BI1A 4P4DA 4MCQA 3NOJA 3T05A 2HWGA 3S9NA 2C6PA 3BI0A 2E28A 2EZCA 2HROA 4P44A 1ZYMA 4NGQA 4IIXA 2EZAA 1C30B 4NGTA 3TLYA 2XEIA 4C9UA 3EIFA 1DIKA 1M6VB 1Y9ZA 1CS0B 4MJXA 4JYWA 3D7GA 4OC1A 5JYBA 1Z8LA 5F9MA 3TLCA 4C8CA 3FF3A 2OOTA 2JBKA 3FECA 4OMEA 4J0NA 1Q5XA 1WVMA 1ZL0A 1KC7A 1R61A 3TLAA 4C85A 3K4IA 1A9XB 4H1HA 4X3RA 4C8PA 2X0SA 4TJVA 4C8AA 4P45A 4TJXA 1XF1A 1T36B 2YJVA 4P4FA 4YN3A 3SJFA 3G23A 1NBWA 2XEGA 4OC0A
chains in the Genus database with same CATH topology
4M8DA 4J0NA 4CO9A 4COGA 1R61A 4CZ1A 4COBA 3KRVA 2B0AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4M8D A;  4J0N A;  4CO9 A;  4COG A;  1R61 A;  4CZ1 A;  4COB A;  3KRV A;  2B0A A; 
#chains in the Genus database with same CATH topology
 2HI6 A;  4CO9 A;  2YJT A;  4P4J A;  4JVO A;  1BXR B;  4KNG E;  4P4E A;  4P4I A;  1NXJ A;  3KRV A;  2C5Q A;  3EZA A;  4NGS A;  1KBL A;  4MI1 A;  4P4B A;  3IIB A;  2XEJ A;  3I6S A;  3TLE A;  4C8T A;  2PVV A;  1CE8 B;  4OC4 A;  5JVL A;  3TLB A;  4NGP A;  1JDE A;  4NGR A;  4EYS A;  3U1B A;  1VBH A;  4NGN A;  3S9M A;  4E94 A;  2CIJ A;  1DE4 C;  3EZB A;  4C86 A;  3D7D A;  4OC5 A;  3TLG B;  2C6G A;  1C3O B;  3TLG A;  2PCN A;  3K9T A;  4OC3 A;  4OC2 A;  2DIK A;  4TWE A;  2PVW A;  3ICU A;  4C99 A;  3FED A;  3SJX A;  1GGO A;  2EK9 A;  2EZB A;  1ZRS A;  2C6C A;  3C8O A;  3T5M A;  3TYX A;  5K99 A;  4INJ A;  3VTA A;  5IR2 A;  4CZ1 A;  4C8F A;  2AUM A;  3TLZ A;  4M8D A;  2EK8 A;  4COG A;  4E5S A;  1V6C A;  3IWW A;  2OLS A;  4C9R A;  1VBG A;  3KAS A;  3EZE A;  3FEE A;  4C8U A;  4MCS A;  3I74 A;  4JZ0 A;  1JDB C;  3SJE A;  4C9E A;  4CDK A;  3SR3 A;  1J3L A;  2JBJ A;  3D7H A;  3BXM A;  3T0T A;  3BHX A;  5ELY A;  4MCR A;  3SJG A;  3S9L A;  2D0P A;  4IIY A;  2R82 A;  1VI4 A;  1CX8 A;  2GP4 A;  3GJZ A;  2AUN A;  5FD8 A;  2D0O A;  5D29 A;  4C9V A;  2XEF A;  4C84 A;  5F09 A;  4CDJ A;  3D7F A;  2OR4 A;  1KEE B;  2MP0 A;  5F1Y A;  1EZA A;  2FM4 A;  4W9Y A;  3T07 A;  3RBU A;  4MCP A;  1EZB A;  5F5X A;  4NGM A;  5IB9 A;  4COB A;  2B0A A;  4C9A A;  4LQG A;  3BI1 A;  4P4D A;  4MCQ A;  3NOJ A;  3T05 A;  2HWG A;  3S9N A;  2C6P A;  3BI0 A;  2E28 A;  2EZC A;  2HRO A;  4P44 A;  1ZYM A;  4NGQ A;  4IIX A;  2EZA A;  1C30 B;  4NGT A;  3TLY A;  2XEI A;  4C9U A;  3EIF A;  1DIK A;  1M6V B;  1Y9Z A;  1CS0 B;  4MJX A;  4JYW A;  3D7G A;  4OC1 A;  5JYB A;  1Z8L A;  5F9M A;  3TLC A;  4C8C A;  3FF3 A;  2OOT A;  2JBK A;  3FEC A;  4OME A;  4J0N A;  1Q5X A;  1WVM A;  1ZL0 A;  1KC7 A;  1R61 A;  3TLA A;  4C85 A;  3K4I A;  1A9X B;  4H1H A;  4X3R A;  4C8P A;  2X0S A;  4TJV A;  4C8A A;  4P45 A;  4TJX A;  1XF1 A;  1T36 B;  2YJV A;  4P4F A;  4YN3 A;  3SJF A;  3G23 A;  1NBW A;  2XEG A;  4OC0 A; 
#chains in the Genus database with same CATH homology
 4M8D A;  4J0N A;  4CO9 A;  4COG A;  1R61 A;  4CZ1 A;  4COB A;  3KRV A;  2B0A A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...