4C84A

Zebrafish znrf3 ectodomain crystal form i
Total Genus 37
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
151
structure length
143
Chain Sequence
DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGLCNEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Danio rerio
molecule tags Ligase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
total genus 37
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c84A00
3I74A 4P4EA 4TJXA 4JZ0A 4C9EA 4OC5A 5ELYA 4NGPA 4TJVA 4NGSA 3SJXA 4TWEA 3BI0A 4OMEA 2XEJA 4C85A 4C8FA 3EIFA 3D7HA 4NGTA 3KASA 4MCSA 3BI1A 4CDJA 4LQGA 3D7FA 4W9YA 1Y9ZA 4CDKA 4NGQA 1V6CA 2OR4A 2CIJA 2EK9A 4C9VA 4C9RA 3S9LA 2XEIA 2XEGA 3D7DA 3IIBA 1DE4C 4C9UA 3SJEA 4C86A 4C8CA 4NGMA 1WVMA 4C84A 3FEEA 2EK8A 4C8TA 3S9MA 4OC3A 4P4IA 4P4DA 3RBUA 4NGRA 4KNGE 4OC0A 4C8UA 4C8AA 2C6PA 2C6CA 3D7GA 2PVWA 2JBJA 4YN3A 4OC1A 4MCQA 3S9NA 2XEFA 5F09A 1CX8A 3VTAA 2OOTA 2PVVA 4C99A 4MCRA 3FF3A 3IWWA 4P4FA 5D29A 4MCPA 3SJFA 4NGNA 3BHXA 3I6SA 4P4BA 3FEDA 3SJGA 1Z8LA 4C8PA 4P45A 4P4JA 4OC4A 4JYWA 1XF1A 2C6GA 3BXMA 4P44A 5IB9A 4X3RA 2JBKA 3FECA 3ICUA 4OC2A 4C9AA
chains in the Genus database with same CATH superfamily
3I74A 4J0NA 4P4EA 2YJVA 4TJXA 4JZ0A 2X0SA 4EYSA 1C30B 4C9EA 4OC5A 3EZBA 5ELYA 4NGPA 4INJA 4TJVA 3TYXA 3TLCA 4NGSA 3SJXA 1VBGA 3BI0A 4OMEA 4TWEA 3C8OA 1NXJA 1R61A 1JDEA 2XEJA 4C85A 4C8FA 1ZYMA 3TLYA 3EIFA 1BXRB 1A9XB 3D7HA 3K4IA 4NGTA 2OLSA 1VI4A 3KASA 4MCSA 1EZBA 4IIYA 3BI1A 4E5SA 5IR2A 2YJTA 4CDJA 4LQGA 3D7FA 4W9YA 1Y9ZA 1C3OB 2HI6A 4CDKA 4NGQA 1V6CA 2OR4A 3GJZA 2CIJA 2EK9A 4C9VA 4MJXA 4C9RA 3S9LA 3TLGA 2XEIA 4CZ1A 2XEGA 3D7DA 3IIBA 1DE4C 4C9UA 1DIKA 3SJEA 4IIXA 4C86A 2EZBA 2HWGA 3NOJA 4C8CA 4MI1A 4H1HA 4NGMA 3EZEA 1JDBC 1WVMA 4C84A 2C5QA 2EK8A 2HROA 3FEEA 3SR3A 1M6VB 2PCNA 4M8DA 4C8TA 2DIKA 2FM4A 3S9MA 4OC3A 4P4IA 3EZAA 5FD8A 4P4DA 1ZL0A 3TLZA 3RBUA 4NGRA 1EZAA 4KNGE 4OC0A 3T05A 2B0AA 4C8UA 4C8AA 2C6PA 2C6CA 3D7GA 3K9TA 2PVWA 2JBJA 2D0OA 4YN3A 1KEEB 3TLAA 2R82A 2MP0A 1KC7A 4OC1A 4MCQA 3G23A 3KRVA 3T07A 3S9NA 2E28A 2XEFA 1ZRSA 5F09A 5JYBA 5F9MA 3T0TA 1CX8A 3VTAA 3T5MA 2OOTA 2PVVA 5F1YA 1NBWA 2AUNA 3TLBA 4C99A 1KBLA 4COBA 3U1BA 4JVOA 4MCRA 3FF3A 1GGOA 3IWWA 4P4FA 1CE8B 4MCPA 5D29A 2D0PA 4NGNA 3SJFA 3BHXA 3TLGB 4CO9A 5K99A 3I6SA 1T36B 1J3LA 3FEDA 4P4BA 3SJGA 1VBHA 1Z8LA 3TLEA 4C8PA 4P45A 5F5XA 5JVLA 2EZCA 4P4JA 4OC4A 4JYWA 1XF1A 2C6GA 3BXMA 4P44A 4E94A 5IB9A 2GP4A 2AUMA 1CS0B 4X3RA 2JBKA 3FECA 3ICUA 2EZAA 4OC2A 1Q5XA 4COGA 4C9AA
chains in the Genus database with same CATH topology
3I74A 4P4EA 4TJXA 4JZ0A 4C9EA 4OC5A 5ELYA 4NGPA 4TJVA 4NGSA 3SJXA 4TWEA 3BI0A 4OMEA 2XEJA 4C85A 4C8FA 3EIFA 3D7HA 4NGTA 3KASA 4MCSA 3BI1A 5IR2A 4CDJA 4LQGA 3D7FA 4W9YA 1Y9ZA 4CDKA 4NGQA 1V6CA 2OR4A 2CIJA 2EK9A 4C9VA 4C9RA 3S9LA 2XEIA 2XEGA 3D7DA 3IIBA 1DE4C 4C9UA 3SJEA 4C86A 4C8CA 4NGMA 1WVMA 4C84A 2C5QA 2EK8A 3FEEA 4C8TA 3S9MA 4OC3A 4P4IA 4P4DA 3RBUA 4NGRA 4KNGE 4OC0A 4C8UA 4C8AA 2C6PA 2C6CA 3D7GA 3K9TA 2PVWA 2JBJA 4YN3A 4OC1A 4MCQA 3S9NA 2XEFA 5F09A 1CX8A 3VTAA 2OOTA 2PVVA 4C99A 4MCRA 3FF3A 3IWWA 4P4FA 5D29A 4MCPA 3SJFA 4NGNA 3BHXA 3I6SA 4P4BA 3FEDA 3SJGA 1Z8LA 4C8PA 4P45A 4P4JA 4OC4A 4JYWA 1XF1A 2C6GA 3BXMA 4P44A 5IB9A 2GP4A 4X3RA 2JBKA 3FECA 3ICUA 4OC2A 4C9AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I74 A;  4P4E A;  4TJX A;  4JZ0 A;  4C9E A;  4OC5 A;  5ELY A;  4NGP A;  4TJV A;  4NGS A;  3SJX A;  4TWE A;  3BI0 A;  4OME A;  2XEJ A;  4C85 A;  4C8F A;  3EIF A;  3D7H A;  4NGT A;  3KAS A;  4MCS A;  3BI1 A;  4CDJ A;  4LQG A;  3D7F A;  4W9Y A;  1Y9Z A;  4CDK A;  4NGQ A;  1V6C A;  2OR4 A;  2CIJ A;  2EK9 A;  4C9V A;  4C9R A;  3S9L A;  2XEI A;  2XEG A;  3D7D A;  3IIB A;  1DE4 C;  4C9U A;  3SJE A;  4C86 A;  4C8C A;  4NGM A;  1WVM A;  4C84 A;  3FEE A;  2EK8 A;  4C8T A;  3S9M A;  4OC3 A;  4P4I A;  4P4D A;  3RBU A;  4NGR A;  4KNG E;  4OC0 A;  4C8U A;  4C8A A;  2C6P A;  2C6C A;  3D7G A;  2PVW A;  2JBJ A;  4YN3 A;  4OC1 A;  4MCQ A;  3S9N A;  2XEF A;  5F09 A;  1CX8 A;  3VTA A;  2OOT A;  2PVV A;  4C99 A;  4MCR A;  3FF3 A;  3IWW A;  4P4F A;  5D29 A;  4MCP A;  3SJF A;  4NGN A;  3BHX A;  3I6S A;  4P4B A;  3FED A;  3SJG A;  1Z8L A;  4C8P A;  4P45 A;  4P4J A;  4OC4 A;  4JYW A;  1XF1 A;  2C6G A;  3BXM A;  4P44 A;  5IB9 A;  4X3R A;  2JBK A;  3FEC A;  3ICU A;  4OC2 A;  4C9A A; 
#chains in the Genus database with same CATH topology
 3I74 A;  4J0N A;  4P4E A;  2YJV A;  4TJX A;  4JZ0 A;  2X0S A;  4EYS A;  1C30 B;  4C9E A;  4OC5 A;  3EZB A;  5ELY A;  4NGP A;  4INJ A;  4TJV A;  3TYX A;  3TLC A;  4NGS A;  3SJX A;  1VBG A;  3BI0 A;  4OME A;  4TWE A;  3C8O A;  1NXJ A;  1R61 A;  1JDE A;  2XEJ A;  4C85 A;  4C8F A;  1ZYM A;  3TLY A;  3EIF A;  1BXR B;  1A9X B;  3D7H A;  3K4I A;  4NGT A;  2OLS A;  1VI4 A;  3KAS A;  4MCS A;  1EZB A;  4IIY A;  3BI1 A;  4E5S A;  5IR2 A;  2YJT A;  4CDJ A;  4LQG A;  3D7F A;  4W9Y A;  1Y9Z A;  1C3O B;  2HI6 A;  4CDK A;  4NGQ A;  1V6C A;  2OR4 A;  3GJZ A;  2CIJ A;  2EK9 A;  4C9V A;  4MJX A;  4C9R A;  3S9L A;  3TLG A;  2XEI A;  4CZ1 A;  2XEG A;  3D7D A;  3IIB A;  1DE4 C;  4C9U A;  1DIK A;  3SJE A;  4IIX A;  4C86 A;  2EZB A;  2HWG A;  3NOJ A;  4C8C A;  4MI1 A;  4H1H A;  4NGM A;  3EZE A;  1JDB C;  1WVM A;  4C84 A;  2C5Q A;  2EK8 A;  2HRO A;  3FEE A;  3SR3 A;  1M6V B;  2PCN A;  4M8D A;  4C8T A;  2DIK A;  2FM4 A;  3S9M A;  4OC3 A;  4P4I A;  3EZA A;  5FD8 A;  4P4D A;  1ZL0 A;  3TLZ A;  3RBU A;  4NGR A;  1EZA A;  4KNG E;  4OC0 A;  3T05 A;  2B0A A;  4C8U A;  4C8A A;  2C6P A;  2C6C A;  3D7G A;  3K9T A;  2PVW A;  2JBJ A;  2D0O A;  4YN3 A;  1KEE B;  3TLA A;  2R82 A;  2MP0 A;  1KC7 A;  4OC1 A;  4MCQ A;  3G23 A;  3KRV A;  3T07 A;  3S9N A;  2E28 A;  2XEF A;  1ZRS A;  5F09 A;  5JYB A;  5F9M A;  3T0T A;  1CX8 A;  3VTA A;  3T5M A;  2OOT A;  2PVV A;  5F1Y A;  1NBW A;  2AUN A;  3TLB A;  4C99 A;  1KBL A;  4COB A;  3U1B A;  4JVO A;  4MCR A;  3FF3 A;  1GGO A;  3IWW A;  4P4F A;  1CE8 B;  4MCP A;  5D29 A;  2D0P A;  4NGN A;  3SJF A;  3BHX A;  3TLG B;  4CO9 A;  5K99 A;  3I6S A;  1T36 B;  1J3L A;  3FED A;  4P4B A;  3SJG A;  1VBH A;  1Z8L A;  3TLE A;  4C8P A;  4P45 A;  5F5X A;  5JVL A;  2EZC A;  4P4J A;  4OC4 A;  4JYW A;  1XF1 A;  2C6G A;  3BXM A;  4P44 A;  4E94 A;  5IB9 A;  2GP4 A;  2AUM A;  1CS0 B;  4X3R A;  2JBK A;  3FEC A;  3ICU A;  2EZA A;  4OC2 A;  1Q5X A;  4COG A;  4C9A A; 
#chains in the Genus database with same CATH homology
 3I74 A;  4P4E A;  4TJX A;  4JZ0 A;  4C9E A;  4OC5 A;  5ELY A;  4NGP A;  4TJV A;  4NGS A;  3SJX A;  4TWE A;  3BI0 A;  4OME A;  2XEJ A;  4C85 A;  4C8F A;  3EIF A;  3D7H A;  4NGT A;  3KAS A;  4MCS A;  3BI1 A;  5IR2 A;  4CDJ A;  4LQG A;  3D7F A;  4W9Y A;  1Y9Z A;  4CDK A;  4NGQ A;  1V6C A;  2OR4 A;  2CIJ A;  2EK9 A;  4C9V A;  4C9R A;  3S9L A;  2XEI A;  2XEG A;  3D7D A;  3IIB A;  1DE4 C;  4C9U A;  3SJE A;  4C86 A;  4C8C A;  4NGM A;  1WVM A;  4C84 A;  2C5Q A;  2EK8 A;  3FEE A;  4C8T A;  3S9M A;  4OC3 A;  4P4I A;  4P4D A;  3RBU A;  4NGR A;  4KNG E;  4OC0 A;  4C8U A;  4C8A A;  2C6P A;  2C6C A;  3D7G A;  3K9T A;  2PVW A;  2JBJ A;  4YN3 A;  4OC1 A;  4MCQ A;  3S9N A;  2XEF A;  5F09 A;  1CX8 A;  3VTA A;  2OOT A;  2PVV A;  4C99 A;  4MCR A;  3FF3 A;  3IWW A;  4P4F A;  5D29 A;  4MCP A;  3SJF A;  4NGN A;  3BHX A;  3I6S A;  4P4B A;  3FED A;  3SJG A;  1Z8L A;  4C8P A;  4P45 A;  4P4J A;  4OC4 A;  4JYW A;  1XF1 A;  2C6G A;  3BXM A;  4P44 A;  5IB9 A;  2GP4 A;  4X3R A;  2JBK A;  3FEC A;  3ICU A;  4OC2 A;  4C9A A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...