4C84A

Zebrafish znrf3 ectodomain crystal form i
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
151
structure length
143
Chain Sequence
DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGLCNEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Danio rerio
molecule tags Ligase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
total genus 37
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c84A00
3SJEA 3S9MA 4P4BA 4P4DA 4P4JA 3BI0A 4OC5A 2CIJA 3KASA 2EK8A 3FEDA 3BXMA 2XEGA 4YN3A 4NGQA 3SJXA 4OMEA 4TWEA 4OC0A 4NGNA 2PVWA 4CDKA 3S9LA 1V6CA 1CX8A 4C9EA 2PVVA 2C6CA 3D7FA 2XEJA 4TJXA 4C8CA 4P4FA 3EIFA 4OC3A 4C8PA 4JYWA 4P4IA 1WVMA 2OR4A 4C9RA 5F09A 4C8UA 1XF1A 2XEIA 3S9NA 5IB9A 4NGPA 3D7DA 4NGMA 4C85A 4CDJA 2XEFA 1Z8LA 4C8TA 3FECA 5ELYA 4C86A 1Y9ZA 2JBKA 3BHXA 4MCRA 3ICUA 4C8AA 4MCSA 4P44A 4C9VA 3FF3A 4NGRA 4MCQA 4C8FA 5D29A 4X3RA 4C99A 2JBJA 4OC4A 3BI1A 4P45A 4C84A 4NGSA 3RBUA 3D7GA 3SJGA 4OC2A 4OC1A 1DE4C 2C6PA 3SJFA 3IWWA 4TJVA 4NGTA 2OOTA 4LQGA 4C9UA 4JZ0A 2EK9A 3IIBA 4W9YA 3D7HA 3VTAA 4KNGE 3FEEA 4MCPA 4P4EA 3I6SA 3I74A 4C9AA 2C6GA
chains in the Genus database with same CATH superfamily
4J0NA 3SJEA 1VBGA 3TLZA 1BXRB 3S9MA 2FM4A 4P4BA 4P4DA 1JDEA 4P4JA 3BI0A 4OC5A 4IIXA 3TLEA 1T36B 2B0AA 2CIJA 3TLGB 3KASA 2EK8A 1CS0B 3FEDA 5JYBA 2C5QA 1KC7A 1EZBA 3T5MA 4CO9A 3BXMA 2XEGA 4YN3A 4NGQA 3SJXA 4OMEA 1M6VB 4CZ1A 4TWEA 4E5SA 4OC0A 4NGNA 1KEEB 2PVWA 4CDKA 3S9LA 1V6CA 1CX8A 4COBA 3T07A 3NOJA 3TLYA 4C9EA 2PVVA 3TLBA 2C6CA 3D7FA 5K99A 2XEJA 4TJXA 1NBWA 4C8CA 4P4FA 3EIFA 2GP4A 4OC3A 4JYWA 4P4IA 4C8PA 1JDBC 3K9TA 1A9XB 3U1BA 1WVMA 4COGA 3C8OA 2OR4A 4C9RA 5F09A 3G23A 5FD8A 4C8UA 1XF1A 2XEIA 5F9MA 2YJTA 5IB9A 3S9NA 2DIKA 4M8DA 2OLSA 3EZEA 4NGPA 4MI1A 5JVLA 2AUNA 3D7DA 4NGMA 4C85A 4CDJA 2R82A 2XEFA 2YJVA 4H1HA 1Z8LA 4C8TA 3FECA 1GGOA 5ELYA 4IIYA 4C86A 3TLGA 3KRVA 1Y9ZA 1ZL0A 3GJZA 2JBKA 3BHXA 4MCRA 3ICUA 4C8AA 4MCSA 4E94A 1CE8B 4P44A 4C9VA 3T0TA 3FF3A 4NGRA 2AUMA 1Q5XA 4MCQA 4C8FA 4X3RA 5D29A 3SR3A 4C99A 2JBJA 1ZRSA 4OC4A 4JVOA 2D0OA 3BI1A 3TYXA 1KBLA 4INJA 4P45A 4C84A 4NGSA 3RBUA 1J3LA 1ZYMA 3D7GA 3SJGA 3EZBA 4MJXA 4OC2A 4OC1A 2D0PA 1R61A 1DE4C 2C6PA 3SJFA 2EZCA 3TLAA 3IWWA 5F1YA 4TJVA 4NGTA 2OOTA 4LQGA 4C9UA 3T05A 4JZ0A 1C30B 2EK9A 3EZAA 1DIKA 1NXJA 2EZBA 2EZAA 2MP0A 2E28A 3IIBA 3D7HA 4W9YA 5F5XA 3TLCA 3VTAA 2HROA 4KNGE 1VBHA 2HWGA 3FEEA 4MCPA 4P4EA 2PCNA 3I6SA 3K4IA 3I74A 2X0SA 4C9AA 4EYSA 5IR2A 2HI6A 1C3OB 1EZAA 1VI4A 2C6GA
chains in the Genus database with same CATH topology
3SJEA 3S9MA 4P4BA 4P4DA 4P4JA 3BI0A 4OC5A 2CIJA 3KASA 2EK8A 3FEDA 2C5QA 3BXMA 2XEGA 4YN3A 4NGQA 3SJXA 4OMEA 4TWEA 4OC0A 4NGNA 2PVWA 4CDKA 3S9LA 1V6CA 1CX8A 4C9EA 2PVVA 2C6CA 3D7FA 2XEJA 4TJXA 4C8CA 4P4FA 3EIFA 4OC3A 2GP4A 4JYWA 4P4IA 4C8PA 3K9TA 1WVMA 2OR4A 4C9RA 5F09A 4C8UA 1XF1A 2XEIA 3S9NA 5IB9A 4NGPA 3D7DA 4NGMA 4C85A 4CDJA 2XEFA 1Z8LA 4C8TA 3FECA 5ELYA 4C86A 1Y9ZA 2JBKA 3BHXA 4MCRA 3ICUA 4C8AA 4MCSA 4P44A 4C9VA 3FF3A 4NGRA 4MCQA 4C8FA 5D29A 4X3RA 4C99A 2JBJA 4OC4A 3BI1A 4P45A 4C84A 4NGSA 3RBUA 3D7GA 3SJGA 4OC2A 4OC1A 1DE4C 2C6PA 3SJFA 3IWWA 4TJVA 4NGTA 2OOTA 4LQGA 4C9UA 4JZ0A 2EK9A 3IIBA 4W9YA 3D7HA 3VTAA 4KNGE 3FEEA 4MCPA 4P4EA 3I6SA 3I74A 4C9AA 5IR2A 2C6GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SJE A;  3S9M A;  4P4B A;  4P4D A;  4P4J A;  3BI0 A;  4OC5 A;  2CIJ A;  3KAS A;  2EK8 A;  3FED A;  3BXM A;  2XEG A;  4YN3 A;  4NGQ A;  3SJX A;  4OME A;  4TWE A;  4OC0 A;  4NGN A;  2PVW A;  4CDK A;  3S9L A;  1V6C A;  1CX8 A;  4C9E A;  2PVV A;  2C6C A;  3D7F A;  2XEJ A;  4TJX A;  4C8C A;  4P4F A;  3EIF A;  4OC3 A;  4C8P A;  4JYW A;  4P4I A;  1WVM A;  2OR4 A;  4C9R A;  5F09 A;  4C8U A;  1XF1 A;  2XEI A;  3S9N A;  5IB9 A;  4NGP A;  3D7D A;  4NGM A;  4C85 A;  4CDJ A;  2XEF A;  1Z8L A;  4C8T A;  3FEC A;  5ELY A;  4C86 A;  1Y9Z A;  2JBK A;  3BHX A;  4MCR A;  3ICU A;  4C8A A;  4MCS A;  4P44 A;  4C9V A;  3FF3 A;  4NGR A;  4MCQ A;  4C8F A;  5D29 A;  4X3R A;  4C99 A;  2JBJ A;  4OC4 A;  3BI1 A;  4P45 A;  4C84 A;  4NGS A;  3RBU A;  3D7G A;  3SJG A;  4OC2 A;  4OC1 A;  1DE4 C;  2C6P A;  3SJF A;  3IWW A;  4TJV A;  4NGT A;  2OOT A;  4LQG A;  4C9U A;  4JZ0 A;  2EK9 A;  3IIB A;  4W9Y A;  3D7H A;  3VTA A;  4KNG E;  3FEE A;  4MCP A;  4P4E A;  3I6S A;  3I74 A;  4C9A A;  2C6G A; 
#chains in the Genus database with same CATH topology
 4J0N A;  3SJE A;  1VBG A;  3TLZ A;  1BXR B;  3S9M A;  2FM4 A;  4P4B A;  4P4D A;  1JDE A;  4P4J A;  3BI0 A;  4OC5 A;  4IIX A;  3TLE A;  1T36 B;  2B0A A;  2CIJ A;  3TLG B;  3KAS A;  2EK8 A;  1CS0 B;  3FED A;  5JYB A;  2C5Q A;  1KC7 A;  1EZB A;  3T5M A;  4CO9 A;  3BXM A;  2XEG A;  4YN3 A;  4NGQ A;  3SJX A;  4OME A;  1M6V B;  4CZ1 A;  4TWE A;  4E5S A;  4OC0 A;  4NGN A;  1KEE B;  2PVW A;  4CDK A;  3S9L A;  1V6C A;  1CX8 A;  4COB A;  3T07 A;  3NOJ A;  3TLY A;  4C9E A;  2PVV A;  3TLB A;  2C6C A;  3D7F A;  5K99 A;  2XEJ A;  4TJX A;  1NBW A;  4C8C A;  4P4F A;  3EIF A;  2GP4 A;  4OC3 A;  4JYW A;  4P4I A;  4C8P A;  1JDB C;  3K9T A;  1A9X B;  3U1B A;  1WVM A;  4COG A;  3C8O A;  2OR4 A;  4C9R A;  5F09 A;  3G23 A;  5FD8 A;  4C8U A;  1XF1 A;  2XEI A;  5F9M A;  2YJT A;  5IB9 A;  3S9N A;  2DIK A;  4M8D A;  2OLS A;  3EZE A;  4NGP A;  4MI1 A;  5JVL A;  2AUN A;  3D7D A;  4NGM A;  4C85 A;  4CDJ A;  2R82 A;  2XEF A;  2YJV A;  4H1H A;  1Z8L A;  4C8T A;  3FEC A;  1GGO A;  5ELY A;  4IIY A;  4C86 A;  3TLG A;  3KRV A;  1Y9Z A;  1ZL0 A;  3GJZ A;  2JBK A;  3BHX A;  4MCR A;  3ICU A;  4C8A A;  4MCS A;  4E94 A;  1CE8 B;  4P44 A;  4C9V A;  3T0T A;  3FF3 A;  4NGR A;  2AUM A;  1Q5X A;  4MCQ A;  4C8F A;  4X3R A;  5D29 A;  3SR3 A;  4C99 A;  2JBJ A;  1ZRS A;  4OC4 A;  4JVO A;  2D0O A;  3BI1 A;  3TYX A;  1KBL A;  4INJ A;  4P45 A;  4C84 A;  4NGS A;  3RBU A;  1J3L A;  1ZYM A;  3D7G A;  3SJG A;  3EZB A;  4MJX A;  4OC2 A;  4OC1 A;  2D0P A;  1R61 A;  1DE4 C;  2C6P A;  3SJF A;  2EZC A;  3TLA A;  3IWW A;  5F1Y A;  4TJV A;  4NGT A;  2OOT A;  4LQG A;  4C9U A;  3T05 A;  4JZ0 A;  1C30 B;  2EK9 A;  3EZA A;  1DIK A;  1NXJ A;  2EZB A;  2EZA A;  2MP0 A;  2E28 A;  3IIB A;  3D7H A;  4W9Y A;  5F5X A;  3TLC A;  3VTA A;  2HRO A;  4KNG E;  1VBH A;  2HWG A;  3FEE A;  4MCP A;  4P4E A;  2PCN A;  3I6S A;  3K4I A;  3I74 A;  2X0S A;  4C9A A;  4EYS A;  5IR2 A;  2HI6 A;  1C3O B;  1EZA A;  1VI4 A;  2C6G A; 
#chains in the Genus database with same CATH homology
 3SJE A;  3S9M A;  4P4B A;  4P4D A;  4P4J A;  3BI0 A;  4OC5 A;  2CIJ A;  3KAS A;  2EK8 A;  3FED A;  2C5Q A;  3BXM A;  2XEG A;  4YN3 A;  4NGQ A;  3SJX A;  4OME A;  4TWE A;  4OC0 A;  4NGN A;  2PVW A;  4CDK A;  3S9L A;  1V6C A;  1CX8 A;  4C9E A;  2PVV A;  2C6C A;  3D7F A;  2XEJ A;  4TJX A;  4C8C A;  4P4F A;  3EIF A;  4OC3 A;  2GP4 A;  4JYW A;  4P4I A;  4C8P A;  3K9T A;  1WVM A;  2OR4 A;  4C9R A;  5F09 A;  4C8U A;  1XF1 A;  2XEI A;  3S9N A;  5IB9 A;  4NGP A;  3D7D A;  4NGM A;  4C85 A;  4CDJ A;  2XEF A;  1Z8L A;  4C8T A;  3FEC A;  5ELY A;  4C86 A;  1Y9Z A;  2JBK A;  3BHX A;  4MCR A;  3ICU A;  4C8A A;  4MCS A;  4P44 A;  4C9V A;  3FF3 A;  4NGR A;  4MCQ A;  4C8F A;  5D29 A;  4X3R A;  4C99 A;  2JBJ A;  4OC4 A;  3BI1 A;  4P45 A;  4C84 A;  4NGS A;  3RBU A;  3D7G A;  3SJG A;  4OC2 A;  4OC1 A;  1DE4 C;  2C6P A;  3SJF A;  3IWW A;  4TJV A;  4NGT A;  2OOT A;  4LQG A;  4C9U A;  4JZ0 A;  2EK9 A;  3IIB A;  4W9Y A;  3D7H A;  3VTA A;  4KNG E;  3FEE A;  4MCP A;  4P4E A;  3I6S A;  3I74 A;  4C9A A;  5IR2 A;  2C6G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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