4C84A

Zebrafish znrf3 ectodomain crystal form i
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
151
structure length
143
Chain Sequence
DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGLCNEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Danio rerio
total genus 37
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c84A00
2C6CA 3BI0A 5D29A 4X3RA 4TWEA 1WVMA 4P4JA 4C85A 4C86A 3ICUA 2EK9A 4NGTA 3IIBA 4KNGE 4C84A 4C9VA 4MCQA 4TJXA 3VTAA 2EK8A 3EIFA 4MCPA 4NGMA 4OC3A 4P4DA 4TJVA 4C8UA 3D7DA 4P4FA 4CDJA 2XEIA 4C9UA 3S9LA 4C8FA 2C6GA 4C99A 1DE4C 5F09A 3I74A 4OC1A 1Y9ZA 3SJFA 4P4IA 3FECA 4OMEA 4P4EA 3BXMA 4OC0A 4P45A 1Z8LA 4NGRA 2XEJA 3S9MA 5ELYA 3BI1A 4C8TA 4NGNA 2JBKA 3KASA 3D7FA 3I6SA 1CX8A 3FEEA 3SJXA 4NGPA 4P4BA 1V6CA 3BHXA 4P44A 2JBJA 4JZ0A 4LQGA 2PVVA 5IB9A 4YN3A 4OC5A 2OR4A 3IWWA 3FEDA 4CDKA 4MCRA 2OOTA 4OC2A 3SJGA 4C9AA 4C8PA 4NGSA 4C8CA 2C6PA 2XEGA 3D7HA 4MCSA 4NGQA 4C8AA 2PVWA 4JYWA 2CIJA 3FF3A 3S9NA 2XEFA 3D7GA 3SJEA 3RBUA 4C9EA 1XF1A 4W9YA 4C9RA 4OC4A
chains in the Genus database with same CATH superfamily
2C6CA 4EYSA 2HI6A 3BI0A 5D29A 3TLYA 3TLAA 4X3RA 4TWEA 1WVMA 4P4JA 1C30B 4C85A 1ZRSA 4C86A 5F5XA 3ICUA 1CE8B 1T36B 2EK9A 4NGTA 3IIBA 1JDEA 4H1HA 4KNGE 4C84A 4C9VA 4MCQA 4TJXA 3VTAA 3GJZA 2EK8A 1C3OB 3EIFA 4MCPA 4NGMA 4OC3A 4P4DA 3TLGA 4TJVA 3TLEA 5IR2A 4C8UA 3D7DA 5JYBA 4P4FA 4CDJA 1VBHA 5JVLA 2E28A 2XEIA 2EZBA 1GGOA 2PCNA 1R61A 2EZAA 3T0TA 4C9UA 3S9LA 3K4IA 4C8FA 4COGA 2C6GA 4C99A 2MP0A 1DIKA 2DIKA 1DE4C 3SR3A 5F09A 2D0OA 2AUNA 4J0NA 3I74A 3TLGB 4OC1A 1J3LA 1Y9ZA 3K9TA 3SJFA 4P4IA 1ZL0A 3FECA 2D0PA 4OMEA 4P4EA 1KC7A 3BXMA 4OC0A 4P45A 2OLSA 4IIXA 4M8DA 4E94A 3T05A 3TYXA 1Z8LA 3EZEA 2AUMA 3EZAA 3U1BA 4NGRA 2XEJA 1NXJA 3S9MA 1BXRB 2B0AA 5ELYA 5F9MA 1KBLA 1VI4A 2X0SA 3BI1A 4MI1A 4C8TA 4NGNA 2JBKA 3KASA 3D7FA 3I6SA 3TLBA 1CX8A 3FEEA 3SJXA 1VBGA 4NGPA 4P4BA 4MJXA 1JDBC 1V6CA 3BHXA 2YJVA 2C5QA 4P44A 2JBJA 2FM4A 4JZ0A 4CO9A 4JVOA 4LQGA 2PVVA 4IIYA 3NOJA 5IB9A 3TLZA 1KEEB 4YN3A 1ZYMA 4E5SA 4OC5A 2OR4A 1CS0B 1M6VB 3FEDA 3IWWA 5F1YA 1Q5XA 2HROA 4CDKA 3T07A 4MCRA 2OOTA 4OC2A 3SJGA 5FD8A 4C9AA 4C8PA 4NGSA 4C8CA 2C6PA 2XEGA 4COBA 2GP4A 2HWGA 3D7HA 3EZBA 2EZCA 4MCSA 4NGQA 4C8AA 2R82A 2PVWA 1NBWA 4JYWA 2CIJA 4INJA 3KRVA 3FF3A 1A9XB 1EZAA 3S9NA 3G23A 2XEFA 3T5MA 3C8OA 3D7GA 3SJEA 5K99A 3RBUA 4C9EA 2YJTA 1XF1A 3TLCA 1EZBA 4W9YA 4C9RA 4CZ1A 4OC4A
chains in the Genus database with same CATH topology
2C6CA 3BI0A 5D29A 4X3RA 4TWEA 1WVMA 4P4JA 4C85A 4C86A 3ICUA 2EK9A 4NGTA 3IIBA 4KNGE 4C84A 4C9VA 4MCQA 4TJXA 3VTAA 2EK8A 3EIFA 4MCPA 4NGMA 4OC3A 4P4DA 4TJVA 5IR2A 4C8UA 3D7DA 4P4FA 4CDJA 2XEIA 4C9UA 3S9LA 4C8FA 2C6GA 4C99A 1DE4C 5F09A 3I74A 4OC1A 1Y9ZA 3K9TA 3SJFA 4P4IA 3FECA 4OMEA 4P4EA 3BXMA 4OC0A 4P45A 1Z8LA 4NGRA 2XEJA 3S9MA 5ELYA 3BI1A 4C8TA 4NGNA 2JBKA 3KASA 3D7FA 3I6SA 1CX8A 3FEEA 3SJXA 4NGPA 4P4BA 1V6CA 3BHXA 2C5QA 4P44A 2JBJA 4JZ0A 4LQGA 2PVVA 5IB9A 4YN3A 4OC5A 2OR4A 3IWWA 3FEDA 4CDKA 4MCRA 2OOTA 4OC2A 3SJGA 4C9AA 4C8PA 4NGSA 4C8CA 2C6PA 2XEGA 2GP4A 3D7HA 4MCSA 4NGQA 4C8AA 2PVWA 4JYWA 2CIJA 3FF3A 3S9NA 2XEFA 3D7GA 3SJEA 3RBUA 4C9EA 1XF1A 4W9YA 4C9RA 4OC4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C6C A;  3BI0 A;  5D29 A;  4X3R A;  4TWE A;  1WVM A;  4P4J A;  4C85 A;  4C86 A;  3ICU A;  2EK9 A;  4NGT A;  3IIB A;  4KNG E;  4C84 A;  4C9V A;  4MCQ A;  4TJX A;  3VTA A;  2EK8 A;  3EIF A;  4MCP A;  4NGM A;  4OC3 A;  4P4D A;  4TJV A;  4C8U A;  3D7D A;  4P4F A;  4CDJ A;  2XEI A;  4C9U A;  3S9L A;  4C8F A;  2C6G A;  4C99 A;  1DE4 C;  5F09 A;  3I74 A;  4OC1 A;  1Y9Z A;  3SJF A;  4P4I A;  3FEC A;  4OME A;  4P4E A;  3BXM A;  4OC0 A;  4P45 A;  1Z8L A;  4NGR A;  2XEJ A;  3S9M A;  5ELY A;  3BI1 A;  4C8T A;  4NGN A;  2JBK A;  3KAS A;  3D7F A;  3I6S A;  1CX8 A;  3FEE A;  3SJX A;  4NGP A;  4P4B A;  1V6C A;  3BHX A;  4P44 A;  2JBJ A;  4JZ0 A;  4LQG A;  2PVV A;  5IB9 A;  4YN3 A;  4OC5 A;  2OR4 A;  3IWW A;  3FED A;  4CDK A;  4MCR A;  2OOT A;  4OC2 A;  3SJG A;  4C9A A;  4C8P A;  4NGS A;  4C8C A;  2C6P A;  2XEG A;  3D7H A;  4MCS A;  4NGQ A;  4C8A A;  2PVW A;  4JYW A;  2CIJ A;  3FF3 A;  3S9N A;  2XEF A;  3D7G A;  3SJE A;  3RBU A;  4C9E A;  1XF1 A;  4W9Y A;  4C9R A;  4OC4 A; 
#chains in the Genus database with same CATH topology
 2C6C A;  4EYS A;  2HI6 A;  3BI0 A;  5D29 A;  3TLY A;  3TLA A;  4X3R A;  4TWE A;  1WVM A;  4P4J A;  1C30 B;  4C85 A;  1ZRS A;  4C86 A;  5F5X A;  3ICU A;  1CE8 B;  1T36 B;  2EK9 A;  4NGT A;  3IIB A;  1JDE A;  4H1H A;  4KNG E;  4C84 A;  4C9V A;  4MCQ A;  4TJX A;  3VTA A;  3GJZ A;  2EK8 A;  1C3O B;  3EIF A;  4MCP A;  4NGM A;  4OC3 A;  4P4D A;  3TLG A;  4TJV A;  3TLE A;  5IR2 A;  4C8U A;  3D7D A;  5JYB A;  4P4F A;  4CDJ A;  1VBH A;  5JVL A;  2E28 A;  2XEI A;  2EZB A;  1GGO A;  2PCN A;  1R61 A;  2EZA A;  3T0T A;  4C9U A;  3S9L A;  3K4I A;  4C8F A;  4COG A;  2C6G A;  4C99 A;  2MP0 A;  1DIK A;  2DIK A;  1DE4 C;  3SR3 A;  5F09 A;  2D0O A;  2AUN A;  4J0N A;  3I74 A;  3TLG B;  4OC1 A;  1J3L A;  1Y9Z A;  3K9T A;  3SJF A;  4P4I A;  1ZL0 A;  3FEC A;  2D0P A;  4OME A;  4P4E A;  1KC7 A;  3BXM A;  4OC0 A;  4P45 A;  2OLS A;  4IIX A;  4M8D A;  4E94 A;  3T05 A;  3TYX A;  1Z8L A;  3EZE A;  2AUM A;  3EZA A;  3U1B A;  4NGR A;  2XEJ A;  1NXJ A;  3S9M A;  1BXR B;  2B0A A;  5ELY A;  5F9M A;  1KBL A;  1VI4 A;  2X0S A;  3BI1 A;  4MI1 A;  4C8T A;  4NGN A;  2JBK A;  3KAS A;  3D7F A;  3I6S A;  3TLB A;  1CX8 A;  3FEE A;  3SJX A;  1VBG A;  4NGP A;  4P4B A;  4MJX A;  1JDB C;  1V6C A;  3BHX A;  2YJV A;  2C5Q A;  4P44 A;  2JBJ A;  2FM4 A;  4JZ0 A;  4CO9 A;  4JVO A;  4LQG A;  2PVV A;  4IIY A;  3NOJ A;  5IB9 A;  3TLZ A;  1KEE B;  4YN3 A;  1ZYM A;  4E5S A;  4OC5 A;  2OR4 A;  1CS0 B;  1M6V B;  3FED A;  3IWW A;  5F1Y A;  1Q5X A;  2HRO A;  4CDK A;  3T07 A;  4MCR A;  2OOT A;  4OC2 A;  3SJG A;  5FD8 A;  4C9A A;  4C8P A;  4NGS A;  4C8C A;  2C6P A;  2XEG A;  4COB A;  2GP4 A;  2HWG A;  3D7H A;  3EZB A;  2EZC A;  4MCS A;  4NGQ A;  4C8A A;  2R82 A;  2PVW A;  1NBW A;  4JYW A;  2CIJ A;  4INJ A;  3KRV A;  3FF3 A;  1A9X B;  1EZA A;  3S9N A;  3G23 A;  2XEF A;  3T5M A;  3C8O A;  3D7G A;  3SJE A;  5K99 A;  3RBU A;  4C9E A;  2YJT A;  1XF1 A;  3TLC A;  1EZB A;  4W9Y A;  4C9R A;  4CZ1 A;  4OC4 A; 
#chains in the Genus database with same CATH homology
 2C6C A;  3BI0 A;  5D29 A;  4X3R A;  4TWE A;  1WVM A;  4P4J A;  4C85 A;  4C86 A;  3ICU A;  2EK9 A;  4NGT A;  3IIB A;  4KNG E;  4C84 A;  4C9V A;  4MCQ A;  4TJX A;  3VTA A;  2EK8 A;  3EIF A;  4MCP A;  4NGM A;  4OC3 A;  4P4D A;  4TJV A;  5IR2 A;  4C8U A;  3D7D A;  4P4F A;  4CDJ A;  2XEI A;  4C9U A;  3S9L A;  4C8F A;  2C6G A;  4C99 A;  1DE4 C;  5F09 A;  3I74 A;  4OC1 A;  1Y9Z A;  3K9T A;  3SJF A;  4P4I A;  3FEC A;  4OME A;  4P4E A;  3BXM A;  4OC0 A;  4P45 A;  1Z8L A;  4NGR A;  2XEJ A;  3S9M A;  5ELY A;  3BI1 A;  4C8T A;  4NGN A;  2JBK A;  3KAS A;  3D7F A;  3I6S A;  1CX8 A;  3FEE A;  3SJX A;  4NGP A;  4P4B A;  1V6C A;  3BHX A;  2C5Q A;  4P44 A;  2JBJ A;  4JZ0 A;  4LQG A;  2PVV A;  5IB9 A;  4YN3 A;  4OC5 A;  2OR4 A;  3IWW A;  3FED A;  4CDK A;  4MCR A;  2OOT A;  4OC2 A;  3SJG A;  4C9A A;  4C8P A;  4NGS A;  4C8C A;  2C6P A;  2XEG A;  2GP4 A;  3D7H A;  4MCS A;  4NGQ A;  4C8A A;  2PVW A;  4JYW A;  2CIJ A;  3FF3 A;  3S9N A;  2XEF A;  3D7G A;  3SJE A;  3RBU A;  4C9E A;  1XF1 A;  4W9Y A;  4C9R A;  4OC4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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