4C84A

Zebrafish znrf3 ectodomain crystal form i
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
151
structure length
143
Chain Sequence
DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGLCNEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Danio rerio
molecule tags Ligase
total genus 37
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c84A00
4C84A 3ICUA 4MCSA 2XEGA 5ELYA 4MCQA 4OMEA 4TJXA 4P45A 4YN3A 2C6PA 3SJGA 3SJFA 3D7DA 2C6CA 2XEJA 4C85A 3FECA 4MCPA 4C86A 4C9RA 3D7HA 4MCRA 2XEFA 4P4JA 3BXMA 3D7GA 4OC2A 3SJXA 4C8CA 4C9UA 1CX8A 2C6GA 4C8PA 4P4IA 2EK9A 4C99A 3IIBA 2PVVA 3FF3A 4JYWA 4C8UA 4C9AA 3FEEA 5F09A 3VTAA 5IB9A 4JZ0A 4TWEA 1DE4C 1WVMA 4P4FA 2EK8A 2JBKA 4CDKA 4P44A 4NGTA 3EIFA 4OC4A 2OOTA 2XEIA 4X3RA 3RBUA 4C9VA 3FEDA 4OC3A 4W9YA 4C9EA 2CIJA 3BI0A 3IWWA 4C8AA 3S9NA 3D7FA 3BI1A 4OC1A 2JBJA 4NGQA 4OC0A 3S9MA 4P4EA 5D29A 4NGNA 3SJEA 4OC5A 4CDJA 4NGPA 3KASA 4TJVA 4KNGE 1V6CA 4P4DA 4NGMA 4C8FA 4NGSA 1Z8LA 3S9LA 1XF1A 4P4BA 3BHXA 4C8TA 3I6SA 4LQGA 4NGRA 2PVWA 2OR4A 1Y9ZA 3I74A
chains in the Genus database with same CATH superfamily
4C84A 1M6VB 3ICUA 1Q5XA 1VBGA 4MCSA 2XEGA 5ELYA 2GP4A 4MCQA 2D0PA 5JYBA 2FM4A 4OMEA 3TLEA 4TJXA 4P45A 1GGOA 1KBLA 4YN3A 4IIYA 2AUMA 2C6PA 3SJGA 3SJFA 3D7DA 3K9TA 1KEEB 2C6CA 3G23A 2R82A 2XEJA 5FD8A 4COGA 2EZBA 4C85A 4MI1A 2MP0A 3TLYA 1R61A 3EZEA 1ZL0A 3FECA 5F9MA 4MCPA 4C86A 4C9RA 4INJA 3D7HA 4MCRA 2E28A 5IR2A 2B0AA 2XEFA 4P4JA 4E94A 3BXMA 4EYSA 3T5MA 1EZBA 3KRVA 3D7GA 4OC2A 1A9XB 3SJXA 4C8CA 1KC7A 1VBHA 2EZCA 4C9UA 2HWGA 2AUNA 1T36B 1CX8A 4IIXA 2C6GA 4C8PA 2D0OA 4P4IA 2EK9A 4C99A 4M8DA 2C5QA 1VI4A 1NBWA 3TLGB 2EZAA 3IIBA 2PVVA 3T07A 3FF3A 4COBA 4E5SA 4JYWA 4C8UA 4C9AA 1CS0B 3FEEA 1J3LA 5F09A 3EZBA 5F1YA 1ZYMA 3VTAA 5IB9A 2OLSA 4JZ0A 4TWEA 3T0TA 3EZAA 1DE4C 1WVMA 3GJZA 1C3OB 4P4FA 2EK8A 2JBKA 4CDKA 4P44A 4CO9A 4MJXA 4NGTA 3TLAA 3EIFA 3U1BA 1JDBC 4OC4A 2OOTA 3NOJA 2XEIA 4X3RA 3RBUA 4C9VA 3FEDA 3K4IA 2DIKA 4OC3A 3C8OA 2HROA 1NXJA 4H1HA 3T05A 3TLGA 5JVLA 4W9YA 1CE8B 4CZ1A 4C9EA 1DIKA 3TLBA 2CIJA 3BI0A 1EZAA 3IWWA 5F5XA 4C8AA 3S9NA 3D7FA 3BI1A 4OC1A 2JBJA 4NGQA 4OC0A 3S9MA 2X0SA 4P4EA 5D29A 4J0NA 4NGNA 1C30B 3SJEA 1ZRSA 2YJTA 4OC5A 3SR3A 4CDJA 4NGPA 3KASA 4TJVA 4KNGE 1V6CA 4P4DA 4NGMA 4C8FA 4NGSA 3TLCA 1Z8LA 2PCNA 3S9LA 1XF1A 3TYXA 2HI6A 4P4BA 3BHXA 4C8TA 3I6SA 1BXRB 1JDEA 2YJVA 4LQGA 3TLZA 5K99A 4NGRA 2PVWA 2OR4A 1Y9ZA 4JVOA 3I74A
chains in the Genus database with same CATH topology
4C84A 3ICUA 4MCSA 2XEGA 5ELYA 2GP4A 4MCQA 4OMEA 4TJXA 4P45A 4YN3A 2C6PA 3SJGA 3SJFA 3D7DA 3K9TA 2C6CA 2XEJA 4C85A 3FECA 4MCPA 4C86A 4C9RA 3D7HA 4MCRA 5IR2A 2XEFA 4P4JA 3BXMA 3D7GA 4OC2A 3SJXA 4C8CA 4C9UA 1CX8A 2C6GA 4C8PA 4P4IA 2EK9A 4C99A 2C5QA 3IIBA 2PVVA 3FF3A 4JYWA 4C8UA 4C9AA 3FEEA 5F09A 3VTAA 5IB9A 4JZ0A 4TWEA 1DE4C 1WVMA 4P4FA 2EK8A 2JBKA 4CDKA 4P44A 4NGTA 3EIFA 4OC4A 2OOTA 2XEIA 4X3RA 3RBUA 4C9VA 3FEDA 4OC3A 4W9YA 4C9EA 2CIJA 3BI0A 3IWWA 4C8AA 3S9NA 3D7FA 3BI1A 4OC1A 2JBJA 4NGQA 4OC0A 3S9MA 4P4EA 5D29A 4NGNA 3SJEA 4OC5A 4CDJA 4NGPA 3KASA 4TJVA 4KNGE 1V6CA 4P4DA 4NGMA 4C8FA 4NGSA 1Z8LA 3S9LA 1XF1A 4P4BA 3BHXA 4C8TA 3I6SA 4LQGA 4NGRA 2PVWA 2OR4A 1Y9ZA 3I74A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C84 A;  3ICU A;  4MCS A;  2XEG A;  5ELY A;  4MCQ A;  4OME A;  4TJX A;  4P45 A;  4YN3 A;  2C6P A;  3SJG A;  3SJF A;  3D7D A;  2C6C A;  2XEJ A;  4C85 A;  3FEC A;  4MCP A;  4C86 A;  4C9R A;  3D7H A;  4MCR A;  2XEF A;  4P4J A;  3BXM A;  3D7G A;  4OC2 A;  3SJX A;  4C8C A;  4C9U A;  1CX8 A;  2C6G A;  4C8P A;  4P4I A;  2EK9 A;  4C99 A;  3IIB A;  2PVV A;  3FF3 A;  4JYW A;  4C8U A;  4C9A A;  3FEE A;  5F09 A;  3VTA A;  5IB9 A;  4JZ0 A;  4TWE A;  1DE4 C;  1WVM A;  4P4F A;  2EK8 A;  2JBK A;  4CDK A;  4P44 A;  4NGT A;  3EIF A;  4OC4 A;  2OOT A;  2XEI A;  4X3R A;  3RBU A;  4C9V A;  3FED A;  4OC3 A;  4W9Y A;  4C9E A;  2CIJ A;  3BI0 A;  3IWW A;  4C8A A;  3S9N A;  3D7F A;  3BI1 A;  4OC1 A;  2JBJ A;  4NGQ A;  4OC0 A;  3S9M A;  4P4E A;  5D29 A;  4NGN A;  3SJE A;  4OC5 A;  4CDJ A;  4NGP A;  3KAS A;  4TJV A;  4KNG E;  1V6C A;  4P4D A;  4NGM A;  4C8F A;  4NGS A;  1Z8L A;  3S9L A;  1XF1 A;  4P4B A;  3BHX A;  4C8T A;  3I6S A;  4LQG A;  4NGR A;  2PVW A;  2OR4 A;  1Y9Z A;  3I74 A; 
#chains in the Genus database with same CATH topology
 4C84 A;  1M6V B;  3ICU A;  1Q5X A;  1VBG A;  4MCS A;  2XEG A;  5ELY A;  2GP4 A;  4MCQ A;  2D0P A;  5JYB A;  2FM4 A;  4OME A;  3TLE A;  4TJX A;  4P45 A;  1GGO A;  1KBL A;  4YN3 A;  4IIY A;  2AUM A;  2C6P A;  3SJG A;  3SJF A;  3D7D A;  3K9T A;  1KEE B;  2C6C A;  3G23 A;  2R82 A;  2XEJ A;  5FD8 A;  4COG A;  2EZB A;  4C85 A;  4MI1 A;  2MP0 A;  3TLY A;  1R61 A;  3EZE A;  1ZL0 A;  3FEC A;  5F9M A;  4MCP A;  4C86 A;  4C9R A;  4INJ A;  3D7H A;  4MCR A;  2E28 A;  5IR2 A;  2B0A A;  2XEF A;  4P4J A;  4E94 A;  3BXM A;  4EYS A;  3T5M A;  1EZB A;  3KRV A;  3D7G A;  4OC2 A;  1A9X B;  3SJX A;  4C8C A;  1KC7 A;  1VBH A;  2EZC A;  4C9U A;  2HWG A;  2AUN A;  1T36 B;  1CX8 A;  4IIX A;  2C6G A;  4C8P A;  2D0O A;  4P4I A;  2EK9 A;  4C99 A;  4M8D A;  2C5Q A;  1VI4 A;  1NBW A;  3TLG B;  2EZA A;  3IIB A;  2PVV A;  3T07 A;  3FF3 A;  4COB A;  4E5S A;  4JYW A;  4C8U A;  4C9A A;  1CS0 B;  3FEE A;  1J3L A;  5F09 A;  3EZB A;  5F1Y A;  1ZYM A;  3VTA A;  5IB9 A;  2OLS A;  4JZ0 A;  4TWE A;  3T0T A;  3EZA A;  1DE4 C;  1WVM A;  3GJZ A;  1C3O B;  4P4F A;  2EK8 A;  2JBK A;  4CDK A;  4P44 A;  4CO9 A;  4MJX A;  4NGT A;  3TLA A;  3EIF A;  3U1B A;  1JDB C;  4OC4 A;  2OOT A;  3NOJ A;  2XEI A;  4X3R A;  3RBU A;  4C9V A;  3FED A;  3K4I A;  2DIK A;  4OC3 A;  3C8O A;  2HRO A;  1NXJ A;  4H1H A;  3T05 A;  3TLG A;  5JVL A;  4W9Y A;  1CE8 B;  4CZ1 A;  4C9E A;  1DIK A;  3TLB A;  2CIJ A;  3BI0 A;  1EZA A;  3IWW A;  5F5X A;  4C8A A;  3S9N A;  3D7F A;  3BI1 A;  4OC1 A;  2JBJ A;  4NGQ A;  4OC0 A;  3S9M A;  2X0S A;  4P4E A;  5D29 A;  4J0N A;  4NGN A;  1C30 B;  3SJE A;  1ZRS A;  2YJT A;  4OC5 A;  3SR3 A;  4CDJ A;  4NGP A;  3KAS A;  4TJV A;  4KNG E;  1V6C A;  4P4D A;  4NGM A;  4C8F A;  4NGS A;  3TLC A;  1Z8L A;  2PCN A;  3S9L A;  1XF1 A;  3TYX A;  2HI6 A;  4P4B A;  3BHX A;  4C8T A;  3I6S A;  1BXR B;  1JDE A;  2YJV A;  4LQG A;  3TLZ A;  5K99 A;  4NGR A;  2PVW A;  2OR4 A;  1Y9Z A;  4JVO A;  3I74 A; 
#chains in the Genus database with same CATH homology
 4C84 A;  3ICU A;  4MCS A;  2XEG A;  5ELY A;  2GP4 A;  4MCQ A;  4OME A;  4TJX A;  4P45 A;  4YN3 A;  2C6P A;  3SJG A;  3SJF A;  3D7D A;  3K9T A;  2C6C A;  2XEJ A;  4C85 A;  3FEC A;  4MCP A;  4C86 A;  4C9R A;  3D7H A;  4MCR A;  5IR2 A;  2XEF A;  4P4J A;  3BXM A;  3D7G A;  4OC2 A;  3SJX A;  4C8C A;  4C9U A;  1CX8 A;  2C6G A;  4C8P A;  4P4I A;  2EK9 A;  4C99 A;  2C5Q A;  3IIB A;  2PVV A;  3FF3 A;  4JYW A;  4C8U A;  4C9A A;  3FEE A;  5F09 A;  3VTA A;  5IB9 A;  4JZ0 A;  4TWE A;  1DE4 C;  1WVM A;  4P4F A;  2EK8 A;  2JBK A;  4CDK A;  4P44 A;  4NGT A;  3EIF A;  4OC4 A;  2OOT A;  2XEI A;  4X3R A;  3RBU A;  4C9V A;  3FED A;  4OC3 A;  4W9Y A;  4C9E A;  2CIJ A;  3BI0 A;  3IWW A;  4C8A A;  3S9N A;  3D7F A;  3BI1 A;  4OC1 A;  2JBJ A;  4NGQ A;  4OC0 A;  3S9M A;  4P4E A;  5D29 A;  4NGN A;  3SJE A;  4OC5 A;  4CDJ A;  4NGP A;  3KAS A;  4TJV A;  4KNG E;  1V6C A;  4P4D A;  4NGM A;  4C8F A;  4NGS A;  1Z8L A;  3S9L A;  1XF1 A;  4P4B A;  3BHX A;  4C8T A;  3I6S A;  4LQG A;  4NGR A;  2PVW A;  2OR4 A;  1Y9Z A;  3I74 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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