1NXJA

Structure of rv3853 from mycobacterium tuberculosis
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
156
structure length
156
Chain Sequence
AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable S-adenosylmethionine:2-demethylmenaquinone methyltr
publication title Crystal Structure of a Putative Methyltransferase from Mycobacterium tuberculosis: Misannotation of a Genome Clarified by Protein Structural Analysis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Unknown function
total genus 53
structure length 156
sequence length 156
chains with identical sequence B, C
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2003-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 1nxjA00
2PCNA 3C8OA 2YJVA 1Q5XA 3K4IA 1NXJA 1J3LA 1VI4A 2YJTA 3NOJA
chains in the Genus database with same CATH superfamily
1CX8A 2OR4A 4OC3A 2YJVA 4P4BA 2OLSA 4NGRA 3TLCA 4M8DA 2R82A 1WVMA 3BHXA 2C6CA 2EZAA 3T05A 4P4DA 2X0SA 4NGPA 2EZBA 4OC0A 1ZYMA 4J0NA 4P44A 4C8CA 4CDKA 3S9NA 4P4IA 1NBWA 4C9EA 4JVOA 1KBLA 4EYSA 2E28A 1EZBA 4C9UA 4C9RA 3K9TA 3S9LA 2YJTA 3NOJA 2HWGA 2MP0A 2XEFA 4CDJA 3FEDA 1VBGA 1BXRB 3EZEA 4NGMA 1T36B 1EZAA 1XF1A 2HI6A 4MCSA 4OC2A 4TJXA 3SJEA 4TJVA 4C8TA 4H1HA 2C5QA 2FM4A 1ZRSA 3TLZA 4P4FA 1R61A 5D29A 3K4IA 5IR2A 4NGNA 1CE8B 2JBKA 3FEEA 1JDBC 3EZAA 3TYXA 1CS0B 3TLAA 1ZL0A 1JDEA 1Y9ZA 1Z8LA 5ELYA 1Q5XA 1M6VB 4CZ1A 1VI4A 2XEIA 2EK8A 5F1YA 5F5XA 3T0TA 3ICUA 1KC7A 3I74A 2C6GA 4C9VA 3G23A 3GJZA 4YN3A 3TLYA 1C30B 2EK9A 4E94A 5FD8A 3KRVA 2XEGA 3I6SA 4C8PA 3D7GA 4KNGE 3EIFA 4OC4A 3BI0A 3D7FA 5IB9A 4INJA 4COBA 2HROA 4X3RA 2DIKA 5K99A 2GP4A 4JZ0A 2OOTA 1C3OB 3U1BA 3D7DA 3C8OA 3VTAA 3IIBA 4OMEA 3SJFA 3SR3A 2D0PA 3D7HA 4NGSA 3SJGA 3BI1A 4IIYA 4MCPA 3TLGB 2AUMA 4CO9A 3TLBA 4C8UA 1VBHA 4OC5A 4C84A 4COGA 4C85A 1V6CA 4MJXA 3T5MA 5F09A 2XEJA 2CIJA 1GGOA 2PVVA 4JYWA 4C8AA 4C8FA 3BXMA 4P4EA 1J3LA 2PVWA 4OC1A 3SJXA 4MCQA 4C99A 4LQGA 3TLGA 4C9AA 4TWEA 2D0OA 1KEEB 2PCNA 4MI1A 2AUNA 2JBJA 1DIKA 4MCRA 5F9MA 5JYBA 4NGQA 5JVLA 1A9XB 3T07A 4C86A 3TLEA 4P4JA 3EZBA 3IWWA 4P45A 4E5SA 3S9MA 1DE4C 2C6PA 4IIXA 3KASA 2B0AA 1NXJA 2EZCA 3RBUA 4W9YA 3FECA 4NGTA 3FF3A
chains in the Genus database with same CATH topology
2PCNA 3C8OA 2YJVA 1Q5XA 3K4IA 1NXJA 1J3LA 1VI4A 2YJTA 3NOJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCN A;  3C8O A;  2YJV A;  1Q5X A;  3K4I A;  1NXJ A;  1J3L A;  1VI4 A;  2YJT A;  3NOJ A; 
#chains in the Genus database with same CATH topology
 1CX8 A;  2OR4 A;  4OC3 A;  2YJV A;  4P4B A;  2OLS A;  4NGR A;  3TLC A;  4M8D A;  2R82 A;  1WVM A;  3BHX A;  2C6C A;  2EZA A;  3T05 A;  4P4D A;  2X0S A;  4NGP A;  2EZB A;  4OC0 A;  1ZYM A;  4J0N A;  4P44 A;  4C8C A;  4CDK A;  3S9N A;  4P4I A;  1NBW A;  4C9E A;  4JVO A;  1KBL A;  4EYS A;  2E28 A;  1EZB A;  4C9U A;  4C9R A;  3K9T A;  3S9L A;  2YJT A;  3NOJ A;  2HWG A;  2MP0 A;  2XEF A;  4CDJ A;  3FED A;  1VBG A;  1BXR B;  3EZE A;  4NGM A;  1T36 B;  1EZA A;  1XF1 A;  2HI6 A;  4MCS A;  4OC2 A;  4TJX A;  3SJE A;  4TJV A;  4C8T A;  4H1H A;  2C5Q A;  2FM4 A;  1ZRS A;  3TLZ A;  4P4F A;  1R61 A;  5D29 A;  3K4I A;  5IR2 A;  4NGN A;  1CE8 B;  2JBK A;  3FEE A;  1JDB C;  3EZA A;  3TYX A;  1CS0 B;  3TLA A;  1ZL0 A;  1JDE A;  1Y9Z A;  1Z8L A;  5ELY A;  1Q5X A;  1M6V B;  4CZ1 A;  1VI4 A;  2XEI A;  2EK8 A;  5F1Y A;  5F5X A;  3T0T A;  3ICU A;  1KC7 A;  3I74 A;  2C6G A;  4C9V A;  3G23 A;  3GJZ A;  4YN3 A;  3TLY A;  1C30 B;  2EK9 A;  4E94 A;  5FD8 A;  3KRV A;  2XEG A;  3I6S A;  4C8P A;  3D7G A;  4KNG E;  3EIF A;  4OC4 A;  3BI0 A;  3D7F A;  5IB9 A;  4INJ A;  4COB A;  2HRO A;  4X3R A;  2DIK A;  5K99 A;  2GP4 A;  4JZ0 A;  2OOT A;  1C3O B;  3U1B A;  3D7D A;  3C8O A;  3VTA A;  3IIB A;  4OME A;  3SJF A;  3SR3 A;  2D0P A;  3D7H A;  4NGS A;  3SJG A;  3BI1 A;  4IIY A;  4MCP A;  3TLG B;  2AUM A;  4CO9 A;  3TLB A;  4C8U A;  1VBH A;  4OC5 A;  4C84 A;  4COG A;  4C85 A;  1V6C A;  4MJX A;  3T5M A;  5F09 A;  2XEJ A;  2CIJ A;  1GGO A;  2PVV A;  4JYW A;  4C8A A;  4C8F A;  3BXM A;  4P4E A;  1J3L A;  2PVW A;  4OC1 A;  3SJX A;  4MCQ A;  4C99 A;  4LQG A;  3TLG A;  4C9A A;  4TWE A;  2D0O A;  1KEE B;  2PCN A;  4MI1 A;  2AUN A;  2JBJ A;  1DIK A;  4MCR A;  5F9M A;  5JYB A;  4NGQ A;  5JVL A;  1A9X B;  3T07 A;  4C86 A;  3TLE A;  4P4J A;  3EZB A;  3IWW A;  4P45 A;  4E5S A;  3S9M A;  1DE4 C;  2C6P A;  4IIX A;  3KAS A;  2B0A A;  1NXJ A;  2EZC A;  3RBU A;  4W9Y A;  3FEC A;  4NGT A;  3FF3 A; 
#chains in the Genus database with same CATH homology
 2PCN A;  3C8O A;  2YJV A;  1Q5X A;  3K4I A;  1NXJ A;  1J3L A;  1VI4 A;  2YJT A;  3NOJ A; 
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similar chains in the Genus database (?% sequence similarity)
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