1NXJA

Structure of rv3853 from mycobacterium tuberculosis
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
156
structure length
156
Chain Sequence
AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable S-adenosylmethionine:2-demethylmenaquinone methyltr
publication title Crystal Structure of a Putative Methyltransferase from Mycobacterium tuberculosis: Misannotation of a Genome Clarified by Protein Structural Analysis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Unknown function
total genus 53
structure length 156
sequence length 156
chains with identical sequence B, C
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2003-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 1nxjA00
1NXJA 3K4IA 3C8OA 2PCNA 1J3LA 1VI4A 3NOJA 2YJTA 2YJVA 1Q5XA
chains in the Genus database with same CATH superfamily
4EYSA 1Z8LA 3U1BA 2XEIA 4P4DA 2YJTA 2C6GA 2D0PA 5JVLA 2PVWA 1EZAA 4E5SA 3FF3A 3TLEA 1R61A 4C9AA 1A9XB 2D0OA 3BI1A 3TLBA 4NGMA 4MJXA 1DE4C 3FECA 3FEDA 3D7HA 3K4IA 4P45A 4C84A 4CDKA 1C30B 2AUMA 3S9NA 3S9LA 2EK9A 4YN3A 3TLAA 1ZRSA 3T07A 4P4JA 4TWEA 5FD8A 4C8TA 4NGRA 2R82A 3GJZA 4NGPA 3SJFA 4C9RA 2EZAA 4CZ1A 1KEEB 4MCSA 4NGQA 5D29A 3D7GA 4NGSA 1CE8B 2PCNA 1DIKA 3S9MA 3NOJA 4COGA 4NGNA 2E28A 2CIJA 2JBKA 1M6VB 3TLCA 1VBGA 3IIBA 4C8CA 2XEFA 2B0AA 4INJA 4OC4A 1WVMA 3D7FA 4KNGE 3ICUA 5JYBA 3TLGA 4P4FA 4TJXA 4E94A 2JBJA 3I74A 4C86A 3I6SA 1VI4A 2C6CA 1GGOA 1ZL0A 4OC0A 4OMEA 3EZAA 3KRVA 3TLGB 4C8FA 3D7DA 3RBUA 1CX8A 2MP0A 2GP4A 1J3LA 4JVOA 5F1YA 2XEGA 5ELYA 4J0NA 3EZBA 4CO9A 4JZ0A 2PVVA 4OC3A 2OOTA 4C99A 5IB9A 3K9TA 3EZEA 4C8AA 1C3OB 1EZBA 4P44A 1VBHA 2HROA 3C8OA 1NBWA 1JDEA 2EZBA 1JDBC 1CS0B 3FEEA 3VTAA 2OLSA 4IIXA 4MCQA 2EK8A 1Y9ZA 3KASA 1V6CA 3SR3A 3TYXA 4COBA 3BI0A 2HI6A 2XEJA 4MCPA 1T36B 4OC2A 2FM4A 4IIYA 4C9VA 3BHXA 3IWWA 3SJXA 3T0TA 1Q5XA 2DIKA 5F09A 4OC5A 3SJGA 4W9YA 1BXRB 4MCRA 4JYWA 4TJVA 4CDJA 4C8UA 5IR2A 4C9UA 3T5MA 2YJVA 4P4BA 3BXMA 4C85A 2HWGA 4X3RA 5K99A 1KC7A 3G23A 3T05A 2C5QA 3TLYA 5F5XA 4C8PA 1KBLA 3EIFA 4OC1A 4M8DA 4H1HA 2EZCA 2X0SA 4P4IA 4LQGA 4C9EA 4NGTA 1NXJA 5F9MA 2C6PA 4P4EA 2OR4A 3SJEA 2AUNA 1XF1A 3TLZA 4MI1A 1ZYMA
chains in the Genus database with same CATH topology
1NXJA 3K4IA 3C8OA 2PCNA 1J3LA 1VI4A 3NOJA 2YJTA 2YJVA 1Q5XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NXJ A;  3K4I A;  3C8O A;  2PCN A;  1J3L A;  1VI4 A;  3NOJ A;  2YJT A;  2YJV A;  1Q5X A; 
#chains in the Genus database with same CATH topology
 4EYS A;  1Z8L A;  3U1B A;  2XEI A;  4P4D A;  2YJT A;  2C6G A;  2D0P A;  5JVL A;  2PVW A;  1EZA A;  4E5S A;  3FF3 A;  3TLE A;  1R61 A;  4C9A A;  1A9X B;  2D0O A;  3BI1 A;  3TLB A;  4NGM A;  4MJX A;  1DE4 C;  3FEC A;  3FED A;  3D7H A;  3K4I A;  4P45 A;  4C84 A;  4CDK A;  1C30 B;  2AUM A;  3S9N A;  3S9L A;  2EK9 A;  4YN3 A;  3TLA A;  1ZRS A;  3T07 A;  4P4J A;  4TWE A;  5FD8 A;  4C8T A;  4NGR A;  2R82 A;  3GJZ A;  4NGP A;  3SJF A;  4C9R A;  2EZA A;  4CZ1 A;  1KEE B;  4MCS A;  4NGQ A;  5D29 A;  3D7G A;  4NGS A;  1CE8 B;  2PCN A;  1DIK A;  3S9M A;  3NOJ A;  4COG A;  4NGN A;  2E28 A;  2CIJ A;  2JBK A;  1M6V B;  3TLC A;  1VBG A;  3IIB A;  4C8C A;  2XEF A;  2B0A A;  4INJ A;  4OC4 A;  1WVM A;  3D7F A;  4KNG E;  3ICU A;  5JYB A;  3TLG A;  4P4F A;  4TJX A;  4E94 A;  2JBJ A;  3I74 A;  4C86 A;  3I6S A;  1VI4 A;  2C6C A;  1GGO A;  1ZL0 A;  4OC0 A;  4OME A;  3EZA A;  3KRV A;  3TLG B;  4C8F A;  3D7D A;  3RBU A;  1CX8 A;  2MP0 A;  2GP4 A;  1J3L A;  4JVO A;  5F1Y A;  2XEG A;  5ELY A;  4J0N A;  3EZB A;  4CO9 A;  4JZ0 A;  2PVV A;  4OC3 A;  2OOT A;  4C99 A;  5IB9 A;  3K9T A;  3EZE A;  4C8A A;  1C3O B;  1EZB A;  4P44 A;  1VBH A;  2HRO A;  3C8O A;  1NBW A;  1JDE A;  2EZB A;  1JDB C;  1CS0 B;  3FEE A;  3VTA A;  2OLS A;  4IIX A;  4MCQ A;  2EK8 A;  1Y9Z A;  3KAS A;  1V6C A;  3SR3 A;  3TYX A;  4COB A;  3BI0 A;  2HI6 A;  2XEJ A;  4MCP A;  1T36 B;  4OC2 A;  2FM4 A;  4IIY A;  4C9V A;  3BHX A;  3IWW A;  3SJX A;  3T0T A;  1Q5X A;  2DIK A;  5F09 A;  4OC5 A;  3SJG A;  4W9Y A;  1BXR B;  4MCR A;  4JYW A;  4TJV A;  4CDJ A;  4C8U A;  5IR2 A;  4C9U A;  3T5M A;  2YJV A;  4P4B A;  3BXM A;  4C85 A;  2HWG A;  4X3R A;  5K99 A;  1KC7 A;  3G23 A;  3T05 A;  2C5Q A;  3TLY A;  5F5X A;  4C8P A;  1KBL A;  3EIF A;  4OC1 A;  4M8D A;  4H1H A;  2EZC A;  2X0S A;  4P4I A;  4LQG A;  4C9E A;  4NGT A;  1NXJ A;  5F9M A;  2C6P A;  4P4E A;  2OR4 A;  3SJE A;  2AUN A;  1XF1 A;  3TLZ A;  4MI1 A;  1ZYM A; 
#chains in the Genus database with same CATH homology
 1NXJ A;  3K4I A;  3C8O A;  2PCN A;  1J3L A;  1VI4 A;  3NOJ A;  2YJT A;  2YJV A;  1Q5X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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