1NXJA

Structure of rv3853 from mycobacterium tuberculosis
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
156
structure length
156
Chain Sequence
AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Probable S-adenosylmethionine:2-demethylmenaquinone methyltr
publication title Crystal Structure of a Putative Methyltransferase from Mycobacterium tuberculosis: Misannotation of a Genome Clarified by Protein Structural Analysis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 53
structure length 156
sequence length 156
chains with identical sequence B, C
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2003-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 1nxjA00
2YJVA 1J3LA 1NXJA 1VI4A 2YJTA 3K4IA 1Q5XA 3NOJA 2PCNA 3C8OA
chains in the Genus database with same CATH superfamily
4P4JA 4NGSA 3TLEA 3TLYA 1JDEA 4OC1A 4OC0A 5F9MA 2X0SA 1R61A 3NOJA 4LQGA 3VTAA 3I6SA 3SR3A 1DIKA 2HI6A 2XEIA 3D7HA 1EZBA 3D7DA 4MJXA 2JBJA 4MCPA 5F1YA 1KBLA 1EZAA 4OC3A 3D7GA 2EZCA 2PVWA 4OC2A 3S9NA 2D0PA 2C6GA 3S9MA 4E5SA 4C85A 4NGQA 5FD8A 5IR2A 2C6CA 4INJA 1Z8LA 1Y9ZA 2C6PA 4KNGE 4OMEA 1CS0B 3IIBA 5JVLA 4P4EA 2E28A 4C84A 4TJXA 1JDBC 5D29A 3IWWA 4NGRA 4YN3A 4P4BA 4C8AA 4P4DA 4MCSA 4NGNA 4OC5A 4C8TA 2GP4A 4P4IA 2C5QA 1VI4A 3K4IA 3RBUA 1A9XB 1KEEB 4P44A 3SJGA 2CIJA 4CO9A 3BHXA 3KRVA 3ICUA 3S9LA 2XEFA 4P4FA 3TLGB 2PCNA 4COBA 2XEJA 1DE4C 3TYXA 1XF1A 3TLZA 1WVMA 4C9AA 1BXRB 1NXJA 4J0NA 4TJVA 3EIFA 4X3RA 3TLAA 3T07A 4C9RA 3KASA 3T5MA 2R82A 4IIYA 4C9UA 4OC4A 2FM4A 2AUNA 3SJXA 2JBKA 1Q5XA 1GGOA 1C3OB 1CE8B 1VBGA 5ELYA 3SJFA 4MCQA 1J3LA 3TLBA 4CDKA 3EZBA 2YJTA 1NBWA 4P45A 4C8FA 3FECA 1VBHA 2D0OA 4C99A 1CX8A 4NGTA 4TWEA 3GJZA 3FF3A 4MI1A 2EK8A 3BXMA 4E94A 3EZAA 1ZRSA 2EZBA 3BI1A 4CDJA 4C9EA 2OR4A 4C8CA 4NGPA 1T36B 2PVVA 5K99A 4MCRA 4EYSA 4IIXA 2OLSA 4CZ1A 5IB9A 3T0TA 1KC7A 2OOTA 1C30B 4C86A 4NGMA 1V6CA 2EZAA 3FEDA 5JYBA 3TLGA 3BI0A 1ZYMA 5F5XA 3SJEA 3I74A 2HWGA 3C8OA 3TLCA 4COGA 2YJVA 2DIKA 4W9YA 4JYWA 4C8UA 3EZEA 2EK9A 2XEGA 4JZ0A 4M8DA 2MP0A 2B0AA 2HROA 3K9TA 4C8PA 4H1HA 1M6VB 4JVOA 3G23A 2AUMA 1ZL0A 3D7FA 3U1BA 5F09A 4C9VA 3FEEA 3T05A
chains in the Genus database with same CATH topology
2YJVA 1J3LA 1NXJA 1VI4A 2YJTA 3K4IA 1Q5XA 3NOJA 2PCNA 3C8OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YJV A;  1J3L A;  1NXJ A;  1VI4 A;  2YJT A;  3K4I A;  1Q5X A;  3NOJ A;  2PCN A;  3C8O A; 
#chains in the Genus database with same CATH topology
 4P4J A;  4NGS A;  3TLE A;  3TLY A;  1JDE A;  4OC1 A;  4OC0 A;  5F9M A;  2X0S A;  1R61 A;  3NOJ A;  4LQG A;  3VTA A;  3I6S A;  3SR3 A;  1DIK A;  2HI6 A;  2XEI A;  3D7H A;  1EZB A;  3D7D A;  4MJX A;  2JBJ A;  4MCP A;  5F1Y A;  1KBL A;  1EZA A;  4OC3 A;  3D7G A;  2EZC A;  2PVW A;  4OC2 A;  3S9N A;  2D0P A;  2C6G A;  3S9M A;  4E5S A;  4C85 A;  4NGQ A;  5FD8 A;  5IR2 A;  2C6C A;  4INJ A;  1Z8L A;  1Y9Z A;  2C6P A;  4KNG E;  4OME A;  1CS0 B;  3IIB A;  5JVL A;  4P4E A;  2E28 A;  4C84 A;  4TJX A;  1JDB C;  5D29 A;  3IWW A;  4NGR A;  4YN3 A;  4P4B A;  4C8A A;  4P4D A;  4MCS A;  4NGN A;  4OC5 A;  4C8T A;  2GP4 A;  4P4I A;  2C5Q A;  1VI4 A;  3K4I A;  3RBU A;  1A9X B;  1KEE B;  4P44 A;  3SJG A;  2CIJ A;  4CO9 A;  3BHX A;  3KRV A;  3ICU A;  3S9L A;  2XEF A;  4P4F A;  3TLG B;  2PCN A;  4COB A;  2XEJ A;  1DE4 C;  3TYX A;  1XF1 A;  3TLZ A;  1WVM A;  4C9A A;  1BXR B;  1NXJ A;  4J0N A;  4TJV A;  3EIF A;  4X3R A;  3TLA A;  3T07 A;  4C9R A;  3KAS A;  3T5M A;  2R82 A;  4IIY A;  4C9U A;  4OC4 A;  2FM4 A;  2AUN A;  3SJX A;  2JBK A;  1Q5X A;  1GGO A;  1C3O B;  1CE8 B;  1VBG A;  5ELY A;  3SJF A;  4MCQ A;  1J3L A;  3TLB A;  4CDK A;  3EZB A;  2YJT A;  1NBW A;  4P45 A;  4C8F A;  3FEC A;  1VBH A;  2D0O A;  4C99 A;  1CX8 A;  4NGT A;  4TWE A;  3GJZ A;  3FF3 A;  4MI1 A;  2EK8 A;  3BXM A;  4E94 A;  3EZA A;  1ZRS A;  2EZB A;  3BI1 A;  4CDJ A;  4C9E A;  2OR4 A;  4C8C A;  4NGP A;  1T36 B;  2PVV A;  5K99 A;  4MCR A;  4EYS A;  4IIX A;  2OLS A;  4CZ1 A;  5IB9 A;  3T0T A;  1KC7 A;  2OOT A;  1C30 B;  4C86 A;  4NGM A;  1V6C A;  2EZA A;  3FED A;  5JYB A;  3TLG A;  3BI0 A;  1ZYM A;  5F5X A;  3SJE A;  3I74 A;  2HWG A;  3C8O A;  3TLC A;  4COG A;  2YJV A;  2DIK A;  4W9Y A;  4JYW A;  4C8U A;  3EZE A;  2EK9 A;  2XEG A;  4JZ0 A;  4M8D A;  2MP0 A;  2B0A A;  2HRO A;  3K9T A;  4C8P A;  4H1H A;  1M6V B;  4JVO A;  3G23 A;  2AUM A;  1ZL0 A;  3D7F A;  3U1B A;  5F09 A;  4C9V A;  3FEE A;  3T05 A; 
#chains in the Genus database with same CATH homology
 2YJV A;  1J3L A;  1NXJ A;  1VI4 A;  2YJT A;  3K4I A;  1Q5X A;  3NOJ A;  2PCN A;  3C8O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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