2C5QA

Crystal structure of yeast yer010cp
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
232
structure length
231
Chain Sequence
SDLQKLQRFSTCDISDGLLNVYNIPTGGYFPNLTAISPPQNSSIVGTAYTVLFAPIDDPRPAVNYIDSVPPNSILVLALEPHLQSQFHPFIKITQAMYGGLMSTRAQYLKSNGTVVFGRIRDVDEHRTLNHPVFAYGVGSCAPKAVVKAVGTNVQLKILTSDGVTQTIPGDYIAGDNNGIVRIPVQETDISKLVTYIEKSIEVDLLVSEDIKNGIPAKQAQNDRRSVLKKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics,unknown function
molecule keywords RRAA-LIKE PROTEIN YER010C
publication title Crystal Structure of Yeast Yer010Cp, a Knotable Member of the Rraa Protein Family.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 74
structure length 231
sequence length 232
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2005-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.100 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 2c5qA00
2C5QA 5IR2A
chains in the Genus database with same CATH superfamily
4MCPA 4P45A 4TJVA 4MI1A 4OC4A 1Z8LA 4LQGA 2OLSA 3TLZA 4EYSA 2JBJA 2B0AA 4NGTA 1NXJA 5IR2A 5IB9A 1ZL0A 2C6CA 3IWWA 3KRVA 3TYXA 2PCNA 1JDBC 1T36B 3S9LA 3TLGA 4CZ1A 4CDJA 2DIKA 1DE4C 3FECA 3EZBA 4OMEA 1CE8B 5D29A 5F1YA 3VTAA 2FM4A 4YN3A 1M6VB 3TLCA 4P4DA 3T5MA 4E94A 1DIKA 4NGPA 3FEEA 3BXMA 3FF3A 4OC1A 2C6GA 3IIBA 1Y9ZA 2C5QA 4C8CA 3ICUA 4J0NA 2EK8A 5F09A 1VI4A 2XEGA 3T0TA 3KASA 4X3RA 3NOJA 3T05A 5ELYA 1C30B 4OC5A 4OC2A 1A9XB 4C9UA 1KEEB 2R82A 4IIYA 4P4FA 3C8OA 4NGQA 1XF1A 2HI6A 3K4IA 4INJA 3TLEA 3S9NA 4C9VA 2YJVA 3D7HA 2CIJA 4TWEA 4NGSA 1WVMA 3TLYA 4JVOA 3EIFA 1EZAA 4MCSA 5FD8A 1J3LA 1V6CA 4MJXA 3BI1A 1C3OB 3SJEA 2D0PA 3BI0A 1CX8A 4C9EA 1NBWA 1VBHA 4CDKA 4P4IA 3TLAA 4H1HA 1R61A 2AUNA 3BHXA 3T07A 4W9YA 4COBA 4P4EA 3I6SA 2HROA 2HWGA 5F5XA 2PVWA 1VBGA 4TJXA 3SJGA 1KC7A 2X0SA 4JZ0A 4C8UA 2EZCA 2EK9A 4OC0A 2XEFA 3RBUA 4P44A 2OOTA 3SJXA 3SR3A 4C8FA 4E5SA 3D7DA 3G23A 4C86A 4JYWA 2MP0A 4C99A 4C9RA 3GJZA 1Q5XA 4C84A 4CO9A 2EZBA 2GP4A 4IIXA 4C8PA 4P4BA 4KNGE 1CS0B 4COGA 4MCRA 3K9TA 3D7GA 1GGOA 3TLBA 2OR4A 3I74A 2XEJA 3EZEA 1BXRB 2C6PA 1ZRSA 4NGNA 4NGMA 2JBKA 2XEIA 3TLGB 4C8TA 3SJFA 1JDEA 4NGRA 3S9MA 5K99A 2AUMA 4OC3A 4P4JA 4C85A 1ZYMA 5JVLA 3FEDA 4C9AA 2D0OA 1EZBA 2PVVA 5F9MA 5JYBA 2E28A 2EZAA 4MCQA 1KBLA 3D7FA 3EZAA 4C8AA 3U1BA 4M8DA 2YJTA
chains in the Genus database with same CATH topology
4MCPA 4P45A 4TJVA 4OC4A 1Z8LA 4LQGA 2JBJA 4NGTA 5IR2A 5IB9A 2C6CA 3IWWA 3S9LA 4CDJA 1DE4C 3FECA 4OMEA 5D29A 3VTAA 4YN3A 4P4DA 4NGPA 3FEEA 3BXMA 3FF3A 4OC1A 2C6GA 3IIBA 1Y9ZA 2C5QA 4C8CA 3ICUA 2EK8A 5F09A 2XEGA 3KASA 4X3RA 5ELYA 4OC2A 4OC5A 4C9UA 4P4FA 4NGQA 3S9NA 1XF1A 4C9VA 4TWEA 3D7HA 2CIJA 4NGSA 1WVMA 3EIFA 4MCSA 1V6CA 3BI1A 3SJEA 3BI0A 1CX8A 4C9EA 4CDKA 4P4IA 3BHXA 4W9YA 4P4EA 3I6SA 3SJGA 2PVWA 4TJXA 4C8UA 4JZ0A 2EK9A 4OC0A 2XEFA 3RBUA 4P44A 2OOTA 3SJXA 4C8FA 3D7DA 4C86A 4JYWA 4C99A 4C9RA 4C84A 2GP4A 4C8PA 4P4BA 4KNGE 4MCRA 3K9TA 3D7GA 2OR4A 3I74A 2XEJA 2C6PA 4NGMA 4NGNA 2JBKA 2XEIA 4C8TA 3SJFA 4NGRA 3S9MA 4OC3A 4P4JA 4C85A 3FEDA 4C9AA 2PVVA 4MCQA 3D7FA 4C8AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C5Q A;  5IR2 A; 
#chains in the Genus database with same CATH topology
 4MCP A;  4P45 A;  4TJV A;  4MI1 A;  4OC4 A;  1Z8L A;  4LQG A;  2OLS A;  3TLZ A;  4EYS A;  2JBJ A;  2B0A A;  4NGT A;  1NXJ A;  5IR2 A;  5IB9 A;  1ZL0 A;  2C6C A;  3IWW A;  3KRV A;  3TYX A;  2PCN A;  1JDB C;  1T36 B;  3S9L A;  3TLG A;  4CZ1 A;  4CDJ A;  2DIK A;  1DE4 C;  3FEC A;  3EZB A;  4OME A;  1CE8 B;  5D29 A;  5F1Y A;  3VTA A;  2FM4 A;  4YN3 A;  1M6V B;  3TLC A;  4P4D A;  3T5M A;  4E94 A;  1DIK A;  4NGP A;  3FEE A;  3BXM A;  3FF3 A;  4OC1 A;  2C6G A;  3IIB A;  1Y9Z A;  2C5Q A;  4C8C A;  3ICU A;  4J0N A;  2EK8 A;  5F09 A;  1VI4 A;  2XEG A;  3T0T A;  3KAS A;  4X3R A;  3NOJ A;  3T05 A;  5ELY A;  1C30 B;  4OC5 A;  4OC2 A;  1A9X B;  4C9U A;  1KEE B;  2R82 A;  4IIY A;  4P4F A;  3C8O A;  4NGQ A;  1XF1 A;  2HI6 A;  3K4I A;  4INJ A;  3TLE A;  3S9N A;  4C9V A;  2YJV A;  3D7H A;  2CIJ A;  4TWE A;  4NGS A;  1WVM A;  3TLY A;  4JVO A;  3EIF A;  1EZA A;  4MCS A;  5FD8 A;  1J3L A;  1V6C A;  4MJX A;  3BI1 A;  1C3O B;  3SJE A;  2D0P A;  3BI0 A;  1CX8 A;  4C9E A;  1NBW A;  1VBH A;  4CDK A;  4P4I A;  3TLA A;  4H1H A;  1R61 A;  2AUN A;  3BHX A;  3T07 A;  4W9Y A;  4COB A;  4P4E A;  3I6S A;  2HRO A;  2HWG A;  5F5X A;  2PVW A;  1VBG A;  4TJX A;  3SJG A;  1KC7 A;  2X0S A;  4JZ0 A;  4C8U A;  2EZC A;  2EK9 A;  4OC0 A;  2XEF A;  3RBU A;  4P44 A;  2OOT A;  3SJX A;  3SR3 A;  4C8F A;  4E5S A;  3D7D A;  3G23 A;  4C86 A;  4JYW A;  2MP0 A;  4C99 A;  4C9R A;  3GJZ A;  1Q5X A;  4C84 A;  4CO9 A;  2EZB A;  2GP4 A;  4IIX A;  4C8P A;  4P4B A;  4KNG E;  1CS0 B;  4COG A;  4MCR A;  3K9T A;  3D7G A;  1GGO A;  3TLB A;  2OR4 A;  3I74 A;  2XEJ A;  3EZE A;  1BXR B;  2C6P A;  1ZRS A;  4NGN A;  4NGM A;  2JBK A;  2XEI A;  3TLG B;  4C8T A;  3SJF A;  1JDE A;  4NGR A;  3S9M A;  5K99 A;  2AUM A;  4OC3 A;  4P4J A;  4C85 A;  1ZYM A;  5JVL A;  3FED A;  4C9A A;  2D0O A;  1EZB A;  2PVV A;  5F9M A;  5JYB A;  2E28 A;  2EZA A;  4MCQ A;  1KBL A;  3D7F A;  3EZA A;  4C8A A;  3U1B A;  4M8D A;  2YJT A; 
#chains in the Genus database with same CATH homology
 4MCP A;  4P45 A;  4TJV A;  4OC4 A;  1Z8L A;  4LQG A;  2JBJ A;  4NGT A;  5IR2 A;  5IB9 A;  2C6C A;  3IWW A;  3S9L A;  4CDJ A;  1DE4 C;  3FEC A;  4OME A;  5D29 A;  3VTA A;  4YN3 A;  4P4D A;  4NGP A;  3FEE A;  3BXM A;  3FF3 A;  4OC1 A;  2C6G A;  3IIB A;  1Y9Z A;  2C5Q A;  4C8C A;  3ICU A;  2EK8 A;  5F09 A;  2XEG A;  3KAS A;  4X3R A;  5ELY A;  4OC2 A;  4OC5 A;  4C9U A;  4P4F A;  4NGQ A;  3S9N A;  1XF1 A;  4C9V A;  4TWE A;  3D7H A;  2CIJ A;  4NGS A;  1WVM A;  3EIF A;  4MCS A;  1V6C A;  3BI1 A;  3SJE A;  3BI0 A;  1CX8 A;  4C9E A;  4CDK A;  4P4I A;  3BHX A;  4W9Y A;  4P4E A;  3I6S A;  3SJG A;  2PVW A;  4TJX A;  4C8U A;  4JZ0 A;  2EK9 A;  4OC0 A;  2XEF A;  3RBU A;  4P44 A;  2OOT A;  3SJX A;  4C8F A;  3D7D A;  4C86 A;  4JYW A;  4C99 A;  4C9R A;  4C84 A;  2GP4 A;  4C8P A;  4P4B A;  4KNG E;  4MCR A;  3K9T A;  3D7G A;  2OR4 A;  3I74 A;  2XEJ A;  2C6P A;  4NGM A;  4NGN A;  2JBK A;  2XEI A;  4C8T A;  3SJF A;  4NGR A;  3S9M A;  4OC3 A;  4P4J A;  4C85 A;  3FED A;  4C9A A;  2PVV A;  4MCQ A;  3D7F A;  4C8A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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