2C5QA

Crystal structure of yeast yer010cp
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
232
structure length
231
Chain Sequence
SDLQKLQRFSTCDISDGLLNVYNIPTGGYFPNLTAISPPQNSSIVGTAYTVLFAPIDDPRPAVNYIDSVPPNSILVLALEPHLQSQFHPFIKITQAMYGGLMSTRAQYLKSNGTVVFGRIRDVDEHRTLNHPVFAYGVGSCAPKAVVKAVGTNVQLKILTSDGVTQTIPGDYIAGDNNGIVRIPVQETDISKLVTYIEKSIEVDLLVSEDIKNGIPAKQAQNDRRSVLKKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics,unknown function
source organism Saccharomyces cerevisiae
publication title Crystal Structure of Yeast Yer010Cp, a Knotable Member of the Rraa Protein Family.
pubmed doi rcsb
molecule keywords RRAA-LIKE PROTEIN YER010C
total genus 74
structure length 231
sequence length 232
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2005-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.100 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 2c5qA00
5IR2A 2C5QA
chains in the Genus database with same CATH superfamily
3ICUA 3IIBA 2EZBA 5JYBA 3I74A 4M8DA 4NGTA 2HWGA 3FEEA 3TLZA 1CE8B 2D0OA 2EK8A 4P4JA 3EZEA 4YN3A 4P4FA 3K9TA 2C6PA 4OC5A 3TLEA 3EIFA 5ELYA 4NGPA 4P4IA 3TYXA 2EK9A 1DE4C 2XEIA 2E28A 3BI0A 5F9MA 4W9YA 3SJGA 1VBGA 2AUNA 1NBWA 2HROA 3K4IA 2AUMA 3C8OA 4C86A 2C6GA 4C84A 2PVVA 3S9LA 5IB9A 1A9XB 4C8UA 3BI1A 3RBUA 3SJXA 4P4DA 2FM4A 3EZBA 4TJVA 4C85A 1EZBA 4MCRA 1BXRB 2PCNA 1ZL0A 1KBLA 1J3LA 4CDJA 4COBA 2YJTA 3SR3A 1KEEB 4C8CA 2OR4A 3FF3A 3G23A 2X0SA 2OOTA 4NGNA 2GP4A 1EZAA 4NGQA 3S9NA 1VBHA 4MCSA 4OC0A 2MP0A 4C99A 4C8AA 1T36B 2C6CA 4TJXA 5F5XA 1WVMA 3SJEA 1Q5XA 3VTAA 2XEFA 1ZRSA 3T0TA 4P44A 4COGA 4IIXA 4OMEA 5JVLA 2JBJA 2JBKA 1JDEA 2XEGA 2B0AA 3BXMA 4OC4A 2PVWA 3I6SA 2DIKA 2EZCA 3FEDA 1CX8A 3TLBA 4CO9A 3BHXA 3KRVA 5F1YA 4C8TA 3IWWA 1KC7A 4NGMA 4MCQA 4OC3A 2HI6A 2YJVA 3SJFA 2D0PA 4X3RA 4C9VA 3TLGA 1R61A 1NXJA 4KNGE 1DIKA 4TWEA 2CIJA 3KASA 3T5MA 2R82A 1VI4A 3GJZA 4P4BA 3D7FA 4MCPA 3D7HA 3NOJA 1CS0B 1V6CA 2C5QA 4C8FA 4C9EA 4CZ1A 4MJXA 3TLGB 4NGRA 4OC1A 1Z8LA 1ZYMA 4P45A 3D7GA 4CDKA 1GGOA 3TLAA 2OLSA 1M6VB 3FECA 4NGSA 4MI1A 4OC2A 5D29A 5K99A 4LQGA 4JZ0A 3T07A 3EZAA 3TLCA 1JDBC 4C9RA 1Y9ZA 4C8PA 4EYSA 1XF1A 5IR2A 3U1BA 4C9UA 1C3OB 4JYWA 3TLYA 4P4EA 5FD8A 4C9AA 4H1HA 2EZAA 3T05A 4E5SA 5F09A 3D7DA 4IIYA 4INJA 1C30B 2XEJA 3S9MA 4JVOA 4J0NA 4E94A
chains in the Genus database with same CATH topology
3ICUA 3IIBA 3I74A 4NGTA 3FEEA 2EK8A 4P4JA 4YN3A 4P4FA 3K9TA 2C6PA 4OC5A 3EIFA 5ELYA 4NGPA 4P4IA 2EK9A 1DE4C 2XEIA 3BI0A 4W9YA 3SJGA 4C86A 2C6GA 4C84A 2PVVA 3S9LA 5IB9A 4C8UA 3BI1A 3RBUA 3SJXA 4P4DA 4TJVA 4C85A 4MCRA 4CDJA 4C8CA 2OR4A 3FF3A 2OOTA 4NGNA 2GP4A 4NGQA 3S9NA 4MCSA 4OC0A 4C8AA 4C99A 2C6CA 4TJXA 1WVMA 3SJEA 3VTAA 2XEFA 4P44A 4OMEA 2JBJA 2JBKA 2XEGA 3BXMA 4OC4A 3I6SA 2PVWA 3FEDA 1CX8A 3BHXA 4C8TA 3IWWA 4NGMA 4MCQA 4OC3A 3SJFA 4X3RA 4C9VA 4KNGE 4TWEA 2CIJA 3KASA 4P4BA 3D7FA 4MCPA 3D7HA 1V6CA 2C5QA 4C8FA 4C9EA 4NGRA 4OC1A 1Z8LA 4P45A 4CDKA 3D7GA 3FECA 4NGSA 4OC2A 5D29A 4LQGA 4JZ0A 4C9RA 4C8PA 1Y9ZA 1XF1A 5IR2A 4C9UA 4JYWA 4P4EA 4C9AA 5F09A 3D7DA 2XEJA 3S9MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IR2 A;  2C5Q A; 
#chains in the Genus database with same CATH topology
 3ICU A;  3IIB A;  2EZB A;  5JYB A;  3I74 A;  4M8D A;  4NGT A;  2HWG A;  3FEE A;  3TLZ A;  1CE8 B;  2D0O A;  2EK8 A;  4P4J A;  3EZE A;  4YN3 A;  4P4F A;  3K9T A;  2C6P A;  4OC5 A;  3TLE A;  3EIF A;  5ELY A;  4NGP A;  4P4I A;  3TYX A;  2EK9 A;  1DE4 C;  2XEI A;  2E28 A;  3BI0 A;  5F9M A;  4W9Y A;  3SJG A;  1VBG A;  2AUN A;  1NBW A;  2HRO A;  3K4I A;  2AUM A;  3C8O A;  4C86 A;  2C6G A;  4C84 A;  2PVV A;  3S9L A;  5IB9 A;  1A9X B;  4C8U A;  3BI1 A;  3RBU A;  3SJX A;  4P4D A;  2FM4 A;  3EZB A;  4TJV A;  4C85 A;  1EZB A;  4MCR A;  1BXR B;  2PCN A;  1ZL0 A;  1KBL A;  1J3L A;  4CDJ A;  4COB A;  2YJT A;  3SR3 A;  1KEE B;  4C8C A;  2OR4 A;  3FF3 A;  3G23 A;  2X0S A;  2OOT A;  4NGN A;  2GP4 A;  1EZA A;  4NGQ A;  3S9N A;  1VBH A;  4MCS A;  4OC0 A;  2MP0 A;  4C99 A;  4C8A A;  1T36 B;  2C6C A;  4TJX A;  5F5X A;  1WVM A;  3SJE A;  1Q5X A;  3VTA A;  2XEF A;  1ZRS A;  3T0T A;  4P44 A;  4COG A;  4IIX A;  4OME A;  5JVL A;  2JBJ A;  2JBK A;  1JDE A;  2XEG A;  2B0A A;  3BXM A;  4OC4 A;  2PVW A;  3I6S A;  2DIK A;  2EZC A;  3FED A;  1CX8 A;  3TLB A;  4CO9 A;  3BHX A;  3KRV A;  5F1Y A;  4C8T A;  3IWW A;  1KC7 A;  4NGM A;  4MCQ A;  4OC3 A;  2HI6 A;  2YJV A;  3SJF A;  2D0P A;  4X3R A;  4C9V A;  3TLG A;  1R61 A;  1NXJ A;  4KNG E;  1DIK A;  4TWE A;  2CIJ A;  3KAS A;  3T5M A;  2R82 A;  1VI4 A;  3GJZ A;  4P4B A;  3D7F A;  4MCP A;  3D7H A;  3NOJ A;  1CS0 B;  1V6C A;  2C5Q A;  4C8F A;  4C9E A;  4CZ1 A;  4MJX A;  3TLG B;  4NGR A;  4OC1 A;  1Z8L A;  1ZYM A;  4P45 A;  3D7G A;  4CDK A;  1GGO A;  3TLA A;  2OLS A;  1M6V B;  3FEC A;  4NGS A;  4MI1 A;  4OC2 A;  5D29 A;  5K99 A;  4LQG A;  4JZ0 A;  3T07 A;  3EZA A;  3TLC A;  1JDB C;  4C9R A;  1Y9Z A;  4C8P A;  4EYS A;  1XF1 A;  5IR2 A;  3U1B A;  4C9U A;  1C3O B;  4JYW A;  3TLY A;  4P4E A;  5FD8 A;  4C9A A;  4H1H A;  2EZA A;  3T05 A;  4E5S A;  5F09 A;  3D7D A;  4IIY A;  4INJ A;  1C30 B;  2XEJ A;  3S9M A;  4JVO A;  4J0N A;  4E94 A; 
#chains in the Genus database with same CATH homology
 3ICU A;  3IIB A;  3I74 A;  4NGT A;  3FEE A;  2EK8 A;  4P4J A;  4YN3 A;  4P4F A;  3K9T A;  2C6P A;  4OC5 A;  3EIF A;  5ELY A;  4NGP A;  4P4I A;  2EK9 A;  1DE4 C;  2XEI A;  3BI0 A;  4W9Y A;  3SJG A;  4C86 A;  2C6G A;  4C84 A;  2PVV A;  3S9L A;  5IB9 A;  4C8U A;  3BI1 A;  3RBU A;  3SJX A;  4P4D A;  4TJV A;  4C85 A;  4MCR A;  4CDJ A;  4C8C A;  2OR4 A;  3FF3 A;  2OOT A;  4NGN A;  2GP4 A;  4NGQ A;  3S9N A;  4MCS A;  4OC0 A;  4C8A A;  4C99 A;  2C6C A;  4TJX A;  1WVM A;  3SJE A;  3VTA A;  2XEF A;  4P44 A;  4OME A;  2JBJ A;  2JBK A;  2XEG A;  3BXM A;  4OC4 A;  3I6S A;  2PVW A;  3FED A;  1CX8 A;  3BHX A;  4C8T A;  3IWW A;  4NGM A;  4MCQ A;  4OC3 A;  3SJF A;  4X3R A;  4C9V A;  4KNG E;  4TWE A;  2CIJ A;  3KAS A;  4P4B A;  3D7F A;  4MCP A;  3D7H A;  1V6C A;  2C5Q A;  4C8F A;  4C9E A;  4NGR A;  4OC1 A;  1Z8L A;  4P45 A;  4CDK A;  3D7G A;  3FEC A;  4NGS A;  4OC2 A;  5D29 A;  4LQG A;  4JZ0 A;  4C9R A;  4C8P A;  1Y9Z A;  1XF1 A;  5IR2 A;  4C9U A;  4JYW A;  4P4E A;  4C9A A;  5F09 A;  3D7D A;  2XEJ A;  3S9M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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