2HI6A

Solution nmr structure of upf0107 protein af_0055, northeast structural genomics consortium target gr101
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
132
structure length
132
Chain Sequence
VKFACRAITRGRAEGEALVTKEYISFLGGIDKETGIVKEDCEIKGESVAGRILVFPGGKGSTVGSYVLLNLRKNGVAPKAIINKKTETIIAVGAAMAEIPLVEVRDEKFFEAVKTGDRVVVNADEGYVELIE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS10 (127-131)S1 (2-4)TI2 (123-126)S2 (6-7)S8 (101-103)S3 (12-19)TIV6 (122-125)TII2 (48-51)O1 (20-22)TIV3 (41-44)O2 (22-24)TIV4 (58-61)TI1 (31-34)TIV2 (32-35)S4 (36-37)AH1 (66-74)TII1 (43-46)S5 (46-47)TVIII1 (61-64)AH2 (88-97)S7 (80-83)TVIII2 (83-86)AH3 (107-112)S9 (117-122)TIV5 (114-117)TIV1 (26-29)S6 (52-55)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Archaeoglobus fulgidus
publication title Solution NMR structure of UPF0107 protein AF_0055, Northeast Structural Genomics Consortium Target GR101 (CASP Target)
rcsb
molecule keywords UPF0107 protein AF0055
total genus 36
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2006-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01989 DUF126 Aconitase X swivel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.10 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Phosphohistidine domain 2hi6A00
2EZCA 1ZYMA 3EZAA 3T0TA 1DIKA 2EZBA 3EZBA 2HROA 1KC7A 1EZAA 3T05A 1VBHA 2EZAA 2FM4A 2E28A 1EZBA 2MP0A 3EZEA 2OLSA 2X0SA 2R82A 1JDEA 5JVLA 1GGOA 1KBLA 2HWGA 2HI6A 3T07A 1VBGA 2DIKA
chains in the Genus database with same CATH superfamily
2EZCA 4CDJA 5D29A 2XEGA 1T36B 3D7HA 3D7GA 1ZYMA 3KASA 3BI0A 4JZ0A 3IIBA 4NGRA 3EZBA 2HROA 1CX8A 4TJVA 3U1BA 3T05A 3G23A 2YJVA 2E28A 4JYWA 2MP0A 2OLSA 3EIFA 2X0SA 5F1YA 3TLEA 4C8FA 4P4BA 2C5QA 5F09A 5IB9A 1JDEA 2GP4A 2XEJA 2HWGA 4P4FA 2HI6A 4MJXA 1BXRB 3D7DA 2D0PA 3T07A 3TLYA 1DE4C 4M8DA 2PVVA 4H1HA 1C3OB 3SR3A 4P44A 2C6PA 5IR2A 2JBKA 4OC2A 1CE8B 2OR4A 3T0TA 2CIJA 3FEEA 5FD8A 3KRVA 2AUNA 1EZAA 3TLCA 4C9EA 1KC7A 1ZL0A 3I6SA 4TWEA 1C30B 3SJGA 4KNGE 5K99A 4COGA 1EZBA 4C8AA 1ZRSA 1NXJA 2EK8A 4NGTA 4OC3A 3TYXA 2R82A 1NBWA 4OC0A 3C8OA 3IWWA 3K4IA 1GGOA 4E94A 4NGSA 2OOTA 3I74A 4CDKA 2YJTA 4P4JA 4C84A 3FECA 4NGMA 4NGPA 4C8UA 3BI1A 1Y9ZA 3SJXA 4MCRA 4OC4A 4MI1A 4IIYA 4MCSA 5F5XA 3RBUA 5JYBA 3EZAA 4JVOA 1CS0B 2EZBA 4CO9A 3S9NA 3S9MA 4P45A 1VBHA 2EZAA 2FM4A 4J0NA 4TJXA 3BXMA 3EZEA 1Z8LA 4X3RA 4C99A 4OMEA 4C9AA 5JVLA 1KEEB 3VTAA 2AUMA 2PVWA 4C8CA 3D7FA 3ICUA 4P4DA 3TLAA 1VBGA 1A9XB 1M6VB 2JBJA 3TLGA 1V6CA 1WVMA 4IIXA 3TLGB 1KBLA 4C9UA 2D0OA 5ELYA 3T5MA 1R61A 4NGQA 4P4IA 2PCNA 4C9VA 2EK9A 2XEIA 4E5SA 1DIKA 3K9TA 4OC1A 4W9YA 3TLZA 4C9RA 4C85A 3SJFA 1J3LA 4P4EA 1XF1A 2C6GA 3TLBA 4C86A 4INJA 3BHXA 1VI4A 3NOJA 5F9MA 4MCQA 3GJZA 1Q5XA 4C8TA 4COBA 1JDBC 3FEDA 3FF3A 4MCPA 4OC5A 4YN3A 4CZ1A 2DIKA 2C6CA 4EYSA 2XEFA 2B0AA 4LQGA 4C8PA 3SJEA 3S9LA 4NGNA
chains in the Genus database with same CATH topology
2EZCA 1ZYMA 3EZAA 3T0TA 1DIKA 2EZBA 3EZBA 2HROA 1KC7A 1EZAA 3T05A 1VBHA 2EZAA 2FM4A 2E28A 1EZBA 2MP0A 3EZEA 2OLSA 2X0SA 2R82A 1JDEA 5JVLA 1GGOA 1KBLA 2HWGA 2HI6A 3T07A 1VBGA 2DIKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EZC A;  1ZYM A;  3EZA A;  3T0T A;  1DIK A;  2EZB A;  3EZB A;  2HRO A;  1KC7 A;  1EZA A;  3T05 A;  1VBH A;  2EZA A;  2FM4 A;  2E28 A;  1EZB A;  2MP0 A;  3EZE A;  2OLS A;  2X0S A;  2R82 A;  1JDE A;  5JVL A;  1GGO A;  1KBL A;  2HWG A;  2HI6 A;  3T07 A;  1VBG A;  2DIK A; 
#chains in the Genus database with same CATH topology
 2EZC A;  4CDJ A;  5D29 A;  2XEG A;  1T36 B;  3D7H A;  3D7G A;  1ZYM A;  3KAS A;  3BI0 A;  4JZ0 A;  3IIB A;  4NGR A;  3EZB A;  2HRO A;  1CX8 A;  4TJV A;  3U1B A;  3T05 A;  3G23 A;  2YJV A;  2E28 A;  4JYW A;  2MP0 A;  2OLS A;  3EIF A;  2X0S A;  5F1Y A;  3TLE A;  4C8F A;  4P4B A;  2C5Q A;  5F09 A;  5IB9 A;  1JDE A;  2GP4 A;  2XEJ A;  2HWG A;  4P4F A;  2HI6 A;  4MJX A;  1BXR B;  3D7D A;  2D0P A;  3T07 A;  3TLY A;  1DE4 C;  4M8D A;  2PVV A;  4H1H A;  1C3O B;  3SR3 A;  4P44 A;  2C6P A;  5IR2 A;  2JBK A;  4OC2 A;  1CE8 B;  2OR4 A;  3T0T A;  2CIJ A;  3FEE A;  5FD8 A;  3KRV A;  2AUN A;  1EZA A;  3TLC A;  4C9E A;  1KC7 A;  1ZL0 A;  3I6S A;  4TWE A;  1C30 B;  3SJG A;  4KNG E;  5K99 A;  4COG A;  1EZB A;  4C8A A;  1ZRS A;  1NXJ A;  2EK8 A;  4NGT A;  4OC3 A;  3TYX A;  2R82 A;  1NBW A;  4OC0 A;  3C8O A;  3IWW A;  3K4I A;  1GGO A;  4E94 A;  4NGS A;  2OOT A;  3I74 A;  4CDK A;  2YJT A;  4P4J A;  4C84 A;  3FEC A;  4NGM A;  4NGP A;  4C8U A;  3BI1 A;  1Y9Z A;  3SJX A;  4MCR A;  4OC4 A;  4MI1 A;  4IIY A;  4MCS A;  5F5X A;  3RBU A;  5JYB A;  3EZA A;  4JVO A;  1CS0 B;  2EZB A;  4CO9 A;  3S9N A;  3S9M A;  4P45 A;  1VBH A;  2EZA A;  2FM4 A;  4J0N A;  4TJX A;  3BXM A;  3EZE A;  1Z8L A;  4X3R A;  4C99 A;  4OME A;  4C9A A;  5JVL A;  1KEE B;  3VTA A;  2AUM A;  2PVW A;  4C8C A;  3D7F A;  3ICU A;  4P4D A;  3TLA A;  1VBG A;  1A9X B;  1M6V B;  2JBJ A;  3TLG A;  1V6C A;  1WVM A;  4IIX A;  3TLG B;  1KBL A;  4C9U A;  2D0O A;  5ELY A;  3T5M A;  1R61 A;  4NGQ A;  4P4I A;  2PCN A;  4C9V A;  2EK9 A;  2XEI A;  4E5S A;  1DIK A;  3K9T A;  4OC1 A;  4W9Y A;  3TLZ A;  4C9R A;  4C85 A;  3SJF A;  1J3L A;  4P4E A;  1XF1 A;  2C6G A;  3TLB A;  4C86 A;  4INJ A;  3BHX A;  1VI4 A;  3NOJ A;  5F9M A;  4MCQ A;  3GJZ A;  1Q5X A;  4C8T A;  4COB A;  1JDB C;  3FED A;  3FF3 A;  4MCP A;  4OC5 A;  4YN3 A;  4CZ1 A;  2DIK A;  2C6C A;  4EYS A;  2XEF A;  2B0A A;  4LQG A;  4C8P A;  3SJE A;  3S9L A;  4NGN A; 
#chains in the Genus database with same CATH homology
 2EZC A;  1ZYM A;  3EZA A;  3T0T A;  1DIK A;  2EZB A;  3EZB A;  2HRO A;  1KC7 A;  1EZA A;  3T05 A;  1VBH A;  2EZA A;  2FM4 A;  2E28 A;  1EZB A;  2MP0 A;  3EZE A;  2OLS A;  2X0S A;  2R82 A;  1JDE A;  5JVL A;  1GGO A;  1KBL A;  2HWG A;  2HI6 A;  3T07 A;  1VBG A;  2DIK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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