2PCNA

Crystal structure of s-adenosylmethionine: 2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus hta426
Total Genus 45
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
161
structure length
161
Chain Sequence
MKTADLCDQFLDELQVCELPFQSYGGKRMFSGPIATVDVFEDNVLVREALETVPPGTVLVVDGKGSRRVALLGDRLAQIACERGLAGVIIHGCIRDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGGVRWEPGAYVYADADGVVVANKDLLAKNG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of S-adenosylmethionine:2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426
rcsb
molecule tags Transferase
source organism Geobacillus kaustophilus
molecule keywords S-adenosylmethionine:2-demethylmenaquinone methyltransferase
total genus 45
structure length 161
sequence length 161
ec nomenclature ec 2.1.1.-:
pdb deposition date 2007-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 2pcnA00
3C8OA 1Q5XA 3NOJA 3K4IA 2YJVA 1VI4A 1NXJA 1J3LA 2PCNA 2YJTA
chains in the Genus database with same CATH superfamily
2EK8A 3C8OA 2AUNA 4JYWA 4MCSA 4P4IA 2XEFA 2OOTA 1VBHA 4COBA 4P45A 3FEEA 4X3RA 3EZEA 3TLZA 1ZL0A 4P4BA 4NGPA 4OC1A 3FEDA 4NGRA 1CS0B 4COGA 3SR3A 5K99A 2EZAA 5IB9A 5F5XA 4MCRA 2MP0A 4C9UA 2FM4A 1VBGA 4E94A 1A9XB 2PVVA 1DIKA 2XEIA 4OC2A 3VTAA 2C6PA 1ZYMA 2YJVA 4E5SA 3RBUA 2JBKA 2XEJA 1Y9ZA 2AUMA 2CIJA 4C9EA 4C8CA 3IWWA 1NBWA 3BI1A 3K4IA 5F09A 2C5QA 4H1HA 1EZBA 1XF1A 1JDBC 4P4FA 4C9AA 5JVLA 1KBLA 4P4DA 3SJEA 1T36B 3K9TA 3D7HA 1NXJA 4OC3A 4JVOA 3BXMA 4NGNA 4TJVA 4IIXA 4C99A 4EYSA 4MI1A 3T07A 5JYBA 2EK9A 5IR2A 1GGOA 4TWEA 3S9LA 2DIKA 3SJFA 1ZRSA 4CDKA 1BXRB 4C8PA 3TLGB 4P4EA 3KASA 4P44A 2C6GA 3TLAA 3D7DA 5FD8A 3FECA 1DE4C 3SJXA 2R82A 1Q5XA 3T5MA 3U1BA 3EZAA 4C9VA 2HROA 2D0PA 4YN3A 2HWGA 5F1YA 4NGSA 3S9NA 4NGTA 1V6CA 1Z8LA 3T0TA 2B0AA 2PVWA 4CZ1A 3IIBA 2C6CA 1M6VB 4C8AA 4W9YA 4JZ0A 2YJTA 2EZCA 4M8DA 4C9RA 3NOJA 2D0OA 1KEEB 5D29A 4C8UA 4OC5A 4MCPA 4CDJA 1J3LA 1R61A 2JBJA 4MJXA 1KC7A 3D7GA 2OLSA 1C30B 3TLCA 3TYXA 4P4JA 4TJXA 3SJGA 1CX8A 4NGMA 3TLYA 1WVMA 3I6SA 4LQGA 3FF3A 2HI6A 4KNGE 4MCQA 4J0NA 3G23A 1EZAA 3BI0A 4C8FA 3ICUA 4OMEA 3S9MA 2EZBA 3KRVA 3T05A 4C85A 3TLEA 4NGQA 4CO9A 3I74A 5ELYA 3BHXA 3D7FA 3EZBA 4C84A 4C8TA 4OC4A 4IIYA 2OR4A 1VI4A 4INJA 3GJZA 1C3OB 3TLGA 3EIFA 2E28A 2X0SA 4OC0A 4C86A 2XEGA 1CE8B 1JDEA 2GP4A 5F9MA 3TLBA 2PCNA
chains in the Genus database with same CATH topology
3C8OA 1Q5XA 3NOJA 3K4IA 2YJVA 1VI4A 1NXJA 1J3LA 2PCNA 2YJTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C8O A;  1Q5X A;  3NOJ A;  3K4I A;  2YJV A;  1VI4 A;  1NXJ A;  1J3L A;  2PCN A;  2YJT A; 
#chains in the Genus database with same CATH topology
 2EK8 A;  3C8O A;  2AUN A;  4JYW A;  4MCS A;  4P4I A;  2XEF A;  2OOT A;  1VBH A;  4COB A;  4P45 A;  3FEE A;  4X3R A;  3EZE A;  3TLZ A;  1ZL0 A;  4P4B A;  4NGP A;  4OC1 A;  3FED A;  4NGR A;  1CS0 B;  4COG A;  3SR3 A;  5K99 A;  2EZA A;  5IB9 A;  5F5X A;  4MCR A;  2MP0 A;  4C9U A;  2FM4 A;  1VBG A;  4E94 A;  1A9X B;  2PVV A;  1DIK A;  2XEI A;  4OC2 A;  3VTA A;  2C6P A;  1ZYM A;  2YJV A;  4E5S A;  3RBU A;  2JBK A;  2XEJ A;  1Y9Z A;  2AUM A;  2CIJ A;  4C9E A;  4C8C A;  3IWW A;  1NBW A;  3BI1 A;  3K4I A;  5F09 A;  2C5Q A;  4H1H A;  1EZB A;  1XF1 A;  1JDB C;  4P4F A;  4C9A A;  5JVL A;  1KBL A;  4P4D A;  3SJE A;  1T36 B;  3K9T A;  3D7H A;  1NXJ A;  4OC3 A;  4JVO A;  3BXM A;  4NGN A;  4TJV A;  4IIX A;  4C99 A;  4EYS A;  4MI1 A;  3T07 A;  5JYB A;  2EK9 A;  5IR2 A;  1GGO A;  4TWE A;  3S9L A;  2DIK A;  3SJF A;  1ZRS A;  4CDK A;  1BXR B;  4C8P A;  3TLG B;  4P4E A;  3KAS A;  4P44 A;  2C6G A;  3TLA A;  3D7D A;  5FD8 A;  3FEC A;  1DE4 C;  3SJX A;  2R82 A;  1Q5X A;  3T5M A;  3U1B A;  3EZA A;  4C9V A;  2HRO A;  2D0P A;  4YN3 A;  2HWG A;  5F1Y A;  4NGS A;  3S9N A;  4NGT A;  1V6C A;  1Z8L A;  3T0T A;  2B0A A;  2PVW A;  4CZ1 A;  3IIB A;  2C6C A;  1M6V B;  4C8A A;  4W9Y A;  4JZ0 A;  2YJT A;  2EZC A;  4M8D A;  4C9R A;  3NOJ A;  2D0O A;  1KEE B;  5D29 A;  4C8U A;  4OC5 A;  4MCP A;  4CDJ A;  1J3L A;  1R61 A;  2JBJ A;  4MJX A;  1KC7 A;  3D7G A;  2OLS A;  1C30 B;  3TLC A;  3TYX A;  4P4J A;  4TJX A;  3SJG A;  1CX8 A;  4NGM A;  3TLY A;  1WVM A;  3I6S A;  4LQG A;  3FF3 A;  2HI6 A;  4KNG E;  4MCQ A;  4J0N A;  3G23 A;  1EZA A;  3BI0 A;  4C8F A;  3ICU A;  4OME A;  3S9M A;  2EZB A;  3KRV A;  3T05 A;  4C85 A;  3TLE A;  4NGQ A;  4CO9 A;  3I74 A;  5ELY A;  3BHX A;  3D7F A;  3EZB A;  4C84 A;  4C8T A;  4OC4 A;  4IIY A;  2OR4 A;  1VI4 A;  4INJ A;  3GJZ A;  1C3O B;  3TLG A;  3EIF A;  2E28 A;  2X0S A;  4OC0 A;  4C86 A;  2XEG A;  1CE8 B;  1JDE A;  2GP4 A;  5F9M A;  3TLB A;  2PCN A; 
#chains in the Genus database with same CATH homology
 3C8O A;  1Q5X A;  3NOJ A;  3K4I A;  2YJV A;  1VI4 A;  1NXJ A;  1J3L A;  2PCN A;  2YJT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...