2YJTA

Crystal structure of e. coli dead-box protein srmb bound to regulator of ribonuclease activity a (rraa)
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
158
structure length
158
Chain Sequence
KYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor/hydrolase
source organism Escherichia coli
publication title Potential Regulatory Interactions of Escherichia Coli Rraa Protein with Dead-Box Helicases.
pubmed doi rcsb
molecule keywords REGULATOR OF RIBONUCLEASE ACTIVITY A
total genus 45
structure length 158
sequence length 158
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 2yjtA00
1J3LA 1NXJA 3C8OA 3K4IA 2PCNA 3NOJA 1VI4A 2YJTA 2YJVA 1Q5XA
chains in the Genus database with same CATH superfamily
3KRVA 3RBUA 2EZBA 4COBA 1ZL0A 1JDEA 3FECA 3TLAA 4C9EA 3EZAA 4E94A 2AUNA 5IR2A 1C30B 1CE8B 2CIJA 3K4IA 3G23A 4MCRA 4IIYA 4E5SA 1WVMA 2C5QA 4JVOA 3SJXA 3TLBA 1EZAA 2E28A 4NGSA 1T36B 2XEGA 2GP4A 2HI6A 2X0SA 3IWWA 4P4EA 5F9MA 3T07A 1ZYMA 4OC3A 2PVVA 4M8DA 1C3OB 4W9YA 1XF1A 1VBHA 3VTAA 4C9VA 1DE4C 3S9NA 2D0OA 3TLCA 1GGOA 2AUMA 3BI0A 4NGTA 4TWEA 2B0AA 2OR4A 3SJEA 4CZ1A 2DIKA 1Y9ZA 3S9MA 4C8FA 4JYWA 2HWGA 2XEIA 3I74A 3SJGA 3TYXA 4P4IA 5JYBA 4CDKA 1NXJA 4MJXA 3I6SA 1VI4A 4OC5A 2JBJA 4TJXA 1Q5XA 3EZBA 3T05A 4C8UA 1CS0B 5F09A 2YJTA 4P4DA 3BXMA 2C6CA 2C6GA 4P4JA 5K99A 4C99A 5ELYA 4X3RA 1J3LA 5D29A 3T5MA 4C8AA 3C8OA 4NGMA 2PCNA 4C9UA 2EK9A 3D7HA 3EIFA 3U1BA 4OC4A 3IIBA 1BXRB 1KBLA 4NGRA 1KC7A 3FEDA 4MCQA 1M6VB 4EYSA 1A9XB 5F5XA 3BI1A 4MCSA 4C8PA 2OOTA 3SJFA 3SR3A 4C85A 2D0PA 5IB9A 2EZAA 4P4BA 2C6PA 4P44A 2MP0A 3TLGA 4JZ0A 5F1YA 4MCPA 1JDBC 1Z8LA 1CX8A 3ICUA 4C84A 3D7DA 2EZCA 4NGPA 4P4FA 2XEJA 2EK8A 4NGQA 1DIKA 3NOJA 1NBWA 4C8TA 2PVWA 4OC2A 5JVLA 3KASA 3BHXA 4C8CA 2YJVA 3T0TA 3TLGB 2FM4A 3TLZA 1V6CA 4OMEA 2HROA 2R82A 4INJA 4C9AA 1R61A 1VBGA 3D7GA 3FF3A 3K9TA 4C86A 3TLEA 3S9LA 4P45A 4OC1A 4KNGE 4COGA 3GJZA 4YN3A 1ZRSA 1KEEB 4OC0A 3TLYA 4CO9A 4J0NA 4TJVA 4H1HA 3EZEA 2JBKA 2XEFA 4MI1A 5FD8A 2OLSA 1EZBA 3FEEA 4IIXA 4LQGA 4NGNA 4C9RA 4CDJA 3D7FA
chains in the Genus database with same CATH topology
1J3LA 1NXJA 3C8OA 3K4IA 2PCNA 3NOJA 1VI4A 2YJTA 2YJVA 1Q5XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J3L A;  1NXJ A;  3C8O A;  3K4I A;  2PCN A;  3NOJ A;  1VI4 A;  2YJT A;  2YJV A;  1Q5X A; 
#chains in the Genus database with same CATH topology
 3KRV A;  3RBU A;  2EZB A;  4COB A;  1ZL0 A;  1JDE A;  3FEC A;  3TLA A;  4C9E A;  3EZA A;  4E94 A;  2AUN A;  5IR2 A;  1C30 B;  1CE8 B;  2CIJ A;  3K4I A;  3G23 A;  4MCR A;  4IIY A;  4E5S A;  1WVM A;  2C5Q A;  4JVO A;  3SJX A;  3TLB A;  1EZA A;  2E28 A;  4NGS A;  1T36 B;  2XEG A;  2GP4 A;  2HI6 A;  2X0S A;  3IWW A;  4P4E A;  5F9M A;  3T07 A;  1ZYM A;  4OC3 A;  2PVV A;  4M8D A;  1C3O B;  4W9Y A;  1XF1 A;  1VBH A;  3VTA A;  4C9V A;  1DE4 C;  3S9N A;  2D0O A;  3TLC A;  1GGO A;  2AUM A;  3BI0 A;  4NGT A;  4TWE A;  2B0A A;  2OR4 A;  3SJE A;  4CZ1 A;  2DIK A;  1Y9Z A;  3S9M A;  4C8F A;  4JYW A;  2HWG A;  2XEI A;  3I74 A;  3SJG A;  3TYX A;  4P4I A;  5JYB A;  4CDK A;  1NXJ A;  4MJX A;  3I6S A;  1VI4 A;  4OC5 A;  2JBJ A;  4TJX A;  1Q5X A;  3EZB A;  3T05 A;  4C8U A;  1CS0 B;  5F09 A;  2YJT A;  4P4D A;  3BXM A;  2C6C A;  2C6G A;  4P4J A;  5K99 A;  4C99 A;  5ELY A;  4X3R A;  1J3L A;  5D29 A;  3T5M A;  4C8A A;  3C8O A;  4NGM A;  2PCN A;  4C9U A;  2EK9 A;  3D7H A;  3EIF A;  3U1B A;  4OC4 A;  3IIB A;  1BXR B;  1KBL A;  4NGR A;  1KC7 A;  3FED A;  4MCQ A;  1M6V B;  4EYS A;  1A9X B;  5F5X A;  3BI1 A;  4MCS A;  4C8P A;  2OOT A;  3SJF A;  3SR3 A;  4C85 A;  2D0P A;  5IB9 A;  2EZA A;  4P4B A;  2C6P A;  4P44 A;  2MP0 A;  3TLG A;  4JZ0 A;  5F1Y A;  4MCP A;  1JDB C;  1Z8L A;  1CX8 A;  3ICU A;  4C84 A;  3D7D A;  2EZC A;  4NGP A;  4P4F A;  2XEJ A;  2EK8 A;  4NGQ A;  1DIK A;  3NOJ A;  1NBW A;  4C8T A;  2PVW A;  4OC2 A;  5JVL A;  3KAS A;  3BHX A;  4C8C A;  2YJV A;  3T0T A;  3TLG B;  2FM4 A;  3TLZ A;  1V6C A;  4OME A;  2HRO A;  2R82 A;  4INJ A;  4C9A A;  1R61 A;  1VBG A;  3D7G A;  3FF3 A;  3K9T A;  4C86 A;  3TLE A;  3S9L A;  4P45 A;  4OC1 A;  4KNG E;  4COG A;  3GJZ A;  4YN3 A;  1ZRS A;  1KEE B;  4OC0 A;  3TLY A;  4CO9 A;  4J0N A;  4TJV A;  4H1H A;  3EZE A;  2JBK A;  2XEF A;  4MI1 A;  5FD8 A;  2OLS A;  1EZB A;  3FEE A;  4IIX A;  4LQG A;  4NGN A;  4C9R A;  4CDJ A;  3D7F A; 
#chains in the Genus database with same CATH homology
 1J3L A;  1NXJ A;  3C8O A;  3K4I A;  2PCN A;  3NOJ A;  1VI4 A;  2YJT A;  2YJV A;  1Q5X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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