2YJTA

Crystal structure of e. coli dead-box protein srmb bound to regulator of ribonuclease activity a (rraa)
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
158
structure length
158
Chain Sequence
KYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor/hydrolase
source organism Escherichia coli
publication title Potential Regulatory Interactions of Escherichia Coli Rraa Protein with Dead-Box Helicases.
pubmed doi rcsb
molecule keywords REGULATOR OF RIBONUCLEASE ACTIVITY A
total genus 45
structure length 158
sequence length 158
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 2yjtA00
1Q5XA 3C8OA 1NXJA 2PCNA 2YJVA 2YJTA 1J3LA 3K4IA 1VI4A 3NOJA
chains in the Genus database with same CATH superfamily
5D29A 3TLBA 4X3RA 3BI1A 1NBWA 4P4DA 5F5XA 3T07A 4MCRA 4C8CA 3D7GA 1Y9ZA 3K9TA 2CIJA 4OC2A 1JDEA 2YJVA 4TJXA 3KASA 4OC5A 3TLEA 2B0AA 1DE4C 2EK8A 2PCNA 4INJA 4E5SA 3I6SA 3S9LA 1Q5XA 1EZAA 4P44A 3VTAA 3TLGA 4OC4A 2AUNA 3FEEA 4P4EA 4CDJA 2XEJA 4IIXA 3ICUA 3S9NA 4OC3A 2E28A 3GJZA 5JVLA 4EYSA 4JZ0A 1EZBA 2MP0A 4NGMA 2C6PA 4NGQA 4MJXA 3SJXA 1BXRB 4MCPA 3D7HA 1C3OB 3KRVA 2GP4A 3TLCA 2HWGA 3IWWA 4C8UA 4C99A 3SR3A 4NGPA 4NGSA 3TLGB 5F09A 4C9EA 1A9XB 1DIKA 3IIBA 2OLSA 2FM4A 1JDBC 2OR4A 1T36B 2XEFA 1V6CA 4P4BA 4P4FA 4YN3A 3T0TA 4NGNA 1KC7A 3BXMA 3EZAA 3T05A 1VI4A 5K99A 3BHXA 4KNGE 5JYBA 3C8OA 4TWEA 3EIFA 3FECA 4OC1A 5IR2A 1KEEB 3EZBA 1C30B 4MCSA 5F9MA 4MI1A 2EZCA 1ZL0A 2XEIA 4C9UA 2JBKA 4CO9A 3FEDA 2EK9A 3TYXA 4H1HA 4C84A 2C5QA 3SJGA 4C8FA 2EZBA 1VBHA 4C85A 4LQGA 2D0PA 1GGOA 4NGTA 4P45A 1R61A 4COGA 3RBUA 3T5MA 1ZRSA 3I74A 1WVMA 4W9YA 2XEGA 4P4IA 4COBA 4C8AA 4CDKA 3TLAA 5F1YA 2OOTA 4IIYA 3BI0A 4OC0A 5FD8A 5ELYA 3SJFA 4J0NA 2AUMA 3G23A 3D7DA 2HI6A 1CS0B 4C8PA 2DIKA 4OMEA 3TLZA 4CZ1A 2YJTA 1KBLA 3K4IA 4NGRA 3U1BA 4M8DA 4MCQA 2X0SA 3TLYA 1NXJA 2HROA 1M6VB 1CE8B 1Z8LA 3NOJA 4JVOA 3D7FA 2C6CA 2D0OA 4C9RA 4P4JA 2PVVA 1VBGA 5IB9A 2JBJA 2PVWA 4JYWA 4C86A 4C9VA 3SJEA 3FF3A 1XF1A 4TJVA 4E94A 3S9MA 1ZYMA 4C9AA 4C8TA 1CX8A 2R82A 3EZEA 1J3LA 2EZAA 2C6GA
chains in the Genus database with same CATH topology
1Q5XA 3C8OA 1NXJA 2PCNA 2YJVA 2YJTA 1J3LA 3K4IA 1VI4A 3NOJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q5X A;  3C8O A;  1NXJ A;  2PCN A;  2YJV A;  2YJT A;  1J3L A;  3K4I A;  1VI4 A;  3NOJ A; 
#chains in the Genus database with same CATH topology
 5D29 A;  3TLB A;  4X3R A;  3BI1 A;  1NBW A;  4P4D A;  5F5X A;  3T07 A;  4MCR A;  4C8C A;  3D7G A;  1Y9Z A;  3K9T A;  2CIJ A;  4OC2 A;  1JDE A;  2YJV A;  4TJX A;  3KAS A;  4OC5 A;  3TLE A;  2B0A A;  1DE4 C;  2EK8 A;  2PCN A;  4INJ A;  4E5S A;  3I6S A;  3S9L A;  1Q5X A;  1EZA A;  4P44 A;  3VTA A;  3TLG A;  4OC4 A;  2AUN A;  3FEE A;  4P4E A;  4CDJ A;  2XEJ A;  4IIX A;  3ICU A;  3S9N A;  4OC3 A;  2E28 A;  3GJZ A;  5JVL A;  4EYS A;  4JZ0 A;  1EZB A;  2MP0 A;  4NGM A;  2C6P A;  4NGQ A;  4MJX A;  3SJX A;  1BXR B;  4MCP A;  3D7H A;  1C3O B;  3KRV A;  2GP4 A;  3TLC A;  2HWG A;  3IWW A;  4C8U A;  4C99 A;  3SR3 A;  4NGP A;  4NGS A;  3TLG B;  5F09 A;  4C9E A;  1A9X B;  1DIK A;  3IIB A;  2OLS A;  2FM4 A;  1JDB C;  2OR4 A;  1T36 B;  2XEF A;  1V6C A;  4P4B A;  4P4F A;  4YN3 A;  3T0T A;  4NGN A;  1KC7 A;  3BXM A;  3EZA A;  3T05 A;  1VI4 A;  5K99 A;  3BHX A;  4KNG E;  5JYB A;  3C8O A;  4TWE A;  3EIF A;  3FEC A;  4OC1 A;  5IR2 A;  1KEE B;  3EZB A;  1C30 B;  4MCS A;  5F9M A;  4MI1 A;  2EZC A;  1ZL0 A;  2XEI A;  4C9U A;  2JBK A;  4CO9 A;  3FED A;  2EK9 A;  3TYX A;  4H1H A;  4C84 A;  2C5Q A;  3SJG A;  4C8F A;  2EZB A;  1VBH A;  4C85 A;  4LQG A;  2D0P A;  1GGO A;  4NGT A;  4P45 A;  1R61 A;  4COG A;  3RBU A;  3T5M A;  1ZRS A;  3I74 A;  1WVM A;  4W9Y A;  2XEG A;  4P4I A;  4COB A;  4C8A A;  4CDK A;  3TLA A;  5F1Y A;  2OOT A;  4IIY A;  3BI0 A;  4OC0 A;  5FD8 A;  5ELY A;  3SJF A;  4J0N A;  2AUM A;  3G23 A;  3D7D A;  2HI6 A;  1CS0 B;  4C8P A;  2DIK A;  4OME A;  3TLZ A;  4CZ1 A;  2YJT A;  1KBL A;  3K4I A;  4NGR A;  3U1B A;  4M8D A;  4MCQ A;  2X0S A;  3TLY A;  1NXJ A;  2HRO A;  1M6V B;  1CE8 B;  1Z8L A;  3NOJ A;  4JVO A;  3D7F A;  2C6C A;  2D0O A;  4C9R A;  4P4J A;  2PVV A;  1VBG A;  5IB9 A;  2JBJ A;  2PVW A;  4JYW A;  4C86 A;  4C9V A;  3SJE A;  3FF3 A;  1XF1 A;  4TJV A;  4E94 A;  3S9M A;  1ZYM A;  4C9A A;  4C8T A;  1CX8 A;  2R82 A;  3EZE A;  1J3L A;  2EZA A;  2C6G A; 
#chains in the Genus database with same CATH homology
 1Q5X A;  3C8O A;  1NXJ A;  2PCN A;  2YJV A;  2YJT A;  1J3L A;  3K4I A;  1VI4 A;  3NOJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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