3KRVA

The structure of potential metal-dependent hydrolase with cyclase activity
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
204
structure length
201
Chain Sequence
AMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVETFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure Of Potential Metal-Dependent Hydrolase With Cyclase Activity
rcsb
molecule tags Hydrolase
source organism Geobacillus stearothermophilus
molecule keywords Hydrolase
total genus 56
structure length 201
sequence length 204
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 3krvA00
4J0NA 4COGA 4CZ1A 4M8DA 1R61A 3KRVA 2B0AA 4COBA 4CO9A
chains in the Genus database with same CATH superfamily
4C86A 4NGMA 4TJXA 3TLCA 4KNGE 3D7HA 4P4BA 3BHXA 3FEEA 3SJFA 5IR2A 4CO9A 3EZAA 4J0NA 3T0TA 3EIFA 2PCNA 2B0AA 1Q5XA 3KRVA 2XEJA 3K4IA 2FM4A 5F1YA 1NXJA 4IIYA 4C8FA 4E94A 2C6PA 3S9LA 2R82A 4M8DA 1C3OB 4OC5A 4X3RA 4IIXA 4OC0A 1KEEB 4JYWA 3NOJA 3TLAA 3BXMA 3D7GA 5F5XA 2HROA 2CIJA 2X0SA 4NGQA 3TLYA 4C8UA 4C9VA 1R61A 1ZRSA 3SJXA 2MP0A 1EZBA 4JVOA 4OC2A 4MI1A 3T07A 3K9TA 4C85A 2XEGA 4TJVA 2XEFA 4MCSA 4E5SA 4C8PA 3C8OA 1VBHA 5JYBA 2C6GA 3EZBA 3G23A 4OMEA 3FEDA 1V6CA 2HWGA 1BXRB 3SJGA 3D7DA 2HI6A 2E28A 4P44A 2EZBA 1M6VB 1DE4C 2OR4A 3T5MA 2YJVA 3BI1A 3TYXA 3I74A 3TLBA 4P4EA 4INJA 1A9XB 5K99A 4OC3A 5JVLA 1ZL0A 5F9MA 1KBLA 3S9MA 2YJTA 2AUMA 3FF3A 4P4JA 4NGPA 3U1BA 3I6SA 2DIKA 5IB9A 4P45A 1WVMA 2PVVA 4C8CA 2JBJA 4C9EA 4NGNA 2AUNA 3KASA 4NGTA 3VTAA 1Y9ZA 5D29A 2OLSA 3S9NA 2EZAA 2C6CA 3SR3A 3EZEA 4TWEA 1DIKA 4COGA 4C9AA 4MJXA 1NBWA 4W9YA 4C8TA 1JDBC 4NGRA 4CDKA 4NGSA 4COBA 1JDEA 3ICUA 1CX8A 3T05A 3TLGA 4C9RA 3IWWA 1CS0B 4OC1A 3TLGB 1VI4A 1T36B 1ZYMA 3BI0A 4C84A 4CZ1A 1EZAA 1J3LA 3IIBA 1XF1A 4C9UA 3SJEA 3GJZA 2EK8A 4OC4A 2PVWA 1CE8B 2D0PA 4P4FA 3D7FA 3TLZA 2XEIA 5FD8A 4CDJA 2EZCA 4MCQA 2OOTA 2EK9A 4C99A 4EYSA 5ELYA 3RBUA 4YN3A 3FECA 2C5QA 1KC7A 2JBKA 2GP4A 4LQGA 1Z8LA 1C30B 4P4IA 3TLEA 1GGOA 5F09A 2D0OA 4C8AA 4MCPA 1VBGA 4JZ0A 4H1HA 4P4DA 4MCRA
chains in the Genus database with same CATH topology
4J0NA 4COGA 4CZ1A 4M8DA 1R61A 3KRVA 2B0AA 4COBA 4CO9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J0N A;  4COG A;  4CZ1 A;  4M8D A;  1R61 A;  3KRV A;  2B0A A;  4COB A;  4CO9 A; 
#chains in the Genus database with same CATH topology
 4C86 A;  4NGM A;  4TJX A;  3TLC A;  4KNG E;  3D7H A;  4P4B A;  3BHX A;  3FEE A;  3SJF A;  5IR2 A;  4CO9 A;  3EZA A;  4J0N A;  3T0T A;  3EIF A;  2PCN A;  2B0A A;  1Q5X A;  3KRV A;  2XEJ A;  3K4I A;  2FM4 A;  5F1Y A;  1NXJ A;  4IIY A;  4C8F A;  4E94 A;  2C6P A;  3S9L A;  2R82 A;  4M8D A;  1C3O B;  4OC5 A;  4X3R A;  4IIX A;  4OC0 A;  1KEE B;  4JYW A;  3NOJ A;  3TLA A;  3BXM A;  3D7G A;  5F5X A;  2HRO A;  2CIJ A;  2X0S A;  4NGQ A;  3TLY A;  4C8U A;  4C9V A;  1R61 A;  1ZRS A;  3SJX A;  2MP0 A;  1EZB A;  4JVO A;  4OC2 A;  4MI1 A;  3T07 A;  3K9T A;  4C85 A;  2XEG A;  4TJV A;  2XEF A;  4MCS A;  4E5S A;  4C8P A;  3C8O A;  1VBH A;  5JYB A;  2C6G A;  3EZB A;  3G23 A;  4OME A;  3FED A;  1V6C A;  2HWG A;  1BXR B;  3SJG A;  3D7D A;  2HI6 A;  2E28 A;  4P44 A;  2EZB A;  1M6V B;  1DE4 C;  2OR4 A;  3T5M A;  2YJV A;  3BI1 A;  3TYX A;  3I74 A;  3TLB A;  4P4E A;  4INJ A;  1A9X B;  5K99 A;  4OC3 A;  5JVL A;  1ZL0 A;  5F9M A;  1KBL A;  3S9M A;  2YJT A;  2AUM A;  3FF3 A;  4P4J A;  4NGP A;  3U1B A;  3I6S A;  2DIK A;  5IB9 A;  4P45 A;  1WVM A;  2PVV A;  4C8C A;  2JBJ A;  4C9E A;  4NGN A;  2AUN A;  3KAS A;  4NGT A;  3VTA A;  1Y9Z A;  5D29 A;  2OLS A;  3S9N A;  2EZA A;  2C6C A;  3SR3 A;  3EZE A;  4TWE A;  1DIK A;  4COG A;  4C9A A;  4MJX A;  1NBW A;  4W9Y A;  4C8T A;  1JDB C;  4NGR A;  4CDK A;  4NGS A;  4COB A;  1JDE A;  3ICU A;  1CX8 A;  3T05 A;  3TLG A;  4C9R A;  3IWW A;  1CS0 B;  4OC1 A;  3TLG B;  1VI4 A;  1T36 B;  1ZYM A;  3BI0 A;  4C84 A;  4CZ1 A;  1EZA A;  1J3L A;  3IIB A;  1XF1 A;  4C9U A;  3SJE A;  3GJZ A;  2EK8 A;  4OC4 A;  2PVW A;  1CE8 B;  2D0P A;  4P4F A;  3D7F A;  3TLZ A;  2XEI A;  5FD8 A;  4CDJ A;  2EZC A;  4MCQ A;  2OOT A;  2EK9 A;  4C99 A;  4EYS A;  5ELY A;  3RBU A;  4YN3 A;  3FEC A;  2C5Q A;  1KC7 A;  2JBK A;  2GP4 A;  4LQG A;  1Z8L A;  1C30 B;  4P4I A;  3TLE A;  1GGO A;  5F09 A;  2D0O A;  4C8A A;  4MCP A;  1VBG A;  4JZ0 A;  4H1H A;  4P4D A;  4MCR A; 
#chains in the Genus database with same CATH homology
 4J0N A;  4COG A;  4CZ1 A;  4M8D A;  1R61 A;  3KRV A;  2B0A A;  4COB A;  4CO9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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