4C84A

Zebrafish znrf3 ectodomain crystal form i
Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
151
structure length
143
Chain Sequence
DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGLCNEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (112-122)S1 (32-42)S2 (48-59)AH1 (77-81)S3 (68-74)TI2 (60-63)S4 (94-99)3H1 (103-105)EMPTYS5 (124-130)TI3 (131-134)TI1 (43-46)AH3 (135-142)Updating...
connected with : NaN
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
molecule tags Ligase
source organism Danio rerio
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
total genus 37
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c84A00
3FEDA 3FEEA 4TWEA 4OMEA 5IB9A 1Z8LA 4W9YA 4P4DA 4C8PA 2OOTA 3IIBA 4JZ0A 2JBKA 4X3RA 4NGMA 2XEJA 4JYWA 4LQGA 2C6PA 4P44A 3D7DA 3BHXA 2PVWA 2C6CA 3FECA 4OC4A 3I6SA 4C9VA 3BXMA 4P4BA 4P45A 3S9MA 4P4IA 4NGQA 4C8TA 4C99A 4C8AA 3BI1A 4KNGE 4MCRA 4C9AA 1CX8A 3KASA 4OC0A 4NGNA 3SJGA 2OR4A 4C84A 1WVMA 4MCSA 3D7FA 4OC5A 5ELYA 2EK8A 2JBJA 4NGRA 4YN3A 4NGSA 4C9RA 4P4JA 4C85A 5F09A 3BI0A 4CDJA 3SJEA 3S9LA 2PVVA 4TJVA 4C9UA 4NGPA 4MCPA 2CIJA 3VTAA 4OC2A 2C6GA 1DE4C 1XF1A 4OC1A 3EIFA 4P4FA 4P4EA 5D29A 3SJXA 3D7GA 4C9EA 4C8CA 4MCQA 2XEFA 2XEIA 3IWWA 2EK9A 4TJXA 3S9NA 3ICUA 4C8FA 3I74A 3SJFA 3FF3A 4OC3A 3D7HA 4C8UA 2XEGA 1Y9ZA 4NGTA 4CDKA 3RBUA 1V6CA 4C86A
chains in the Genus database with same CATH superfamily
3FEDA 3FEEA 5K99A 2X0SA 1BXRB 4TWEA 4OMEA 1ZRSA 4E94A 5IB9A 1Z8LA 3TLGB 1J3LA 2B0AA 1VBHA 4W9YA 4P4DA 4C8PA 1CS0B 2AUNA 5JVLA 2FM4A 2OOTA 3TLGA 3IIBA 4JZ0A 2JBKA 4X3RA 3TYXA 4NGMA 2XEJA 4INJA 4JYWA 4LQGA 3GJZA 2C6PA 4P44A 3D7DA 4CO9A 3SR3A 3BHXA 2R82A 2OLSA 2GP4A 2PVWA 3C8OA 2C6CA 3EZEA 3FECA 4OC4A 3I6SA 4C9VA 3BXMA 2YJTA 1EZAA 3TLZA 4P4BA 4P45A 2EZAA 3S9MA 4P4IA 4NGQA 1C3OB 5F9MA 4C8TA 1NXJA 3EZBA 4C99A 5F5XA 4C8AA 4E5SA 5JYBA 3BI1A 1VBGA 1KC7A 4MJXA 4KNGE 4MCRA 4JVOA 2EZCA 3T05A 4C9AA 3U1BA 4EYSA 1CX8A 3KASA 4OC0A 4NGNA 1C30B 3SJGA 1GGOA 1EZBA 1A9XB 3TLAA 2OR4A 5F1YA 4COBA 4J0NA 2EZBA 4C84A 1WVMA 2DIKA 1T36B 2HI6A 4MCSA 3D7FA 4OC5A 5ELYA 2EK8A 2JBJA 4NGRA 2MP0A 4YN3A 2PCNA 4NGSA 3G23A 4P4JA 3T0TA 3TLBA 3BI0A 1ZYMA 1ZL0A 4C9RA 4C85A 3TLEA 1JDBC 4CDJA 3SJEA 3K4IA 3S9LA 3TLYA 4CZ1A 2PVVA 4TJVA 4C9UA 4H1HA 1JDEA 4NGPA 2HWGA 4MCPA 4IIYA 2CIJA 3K9TA 2E28A 3VTAA 4OC2A 2C6GA 1R61A 1NBWA 1DE4C 3EZAA 1XF1A 2D0PA 4M8DA 4OC1A 3EIFA 2D0OA 4MI1A 4P4FA 4P4EA 1VI4A 2AUMA 1M6VB 5D29A 1KEEB 3D7GA 5FD8A 3SJXA 4C9EA 4COGA 4C8CA 1DIKA 4MCQA 4IIXA 2XEFA 2XEIA 3IWWA 2EK9A 3T5MA 4TJXA 3S9NA 3ICUA 4C8FA 3I74A 3SJFA 3NOJA 3FF3A 3TLCA 3T07A 4OC3A 2HROA 3D7HA 1Q5XA 4C8UA 2XEGA 1Y9ZA 4NGTA 4CDKA 5F09A 3KRVA 3RBUA 2C5QA 5IR2A 1V6CA 4C86A 1KBLA 1CE8B 2YJVA
chains in the Genus database with same CATH topology
3FEDA 3FEEA 4TWEA 4OMEA 5IB9A 1Z8LA 4W9YA 4P4DA 4C8PA 2OOTA 3IIBA 4JZ0A 2JBKA 4X3RA 4NGMA 2XEJA 4JYWA 4LQGA 2C6PA 4P44A 3D7DA 3BHXA 2GP4A 2PVWA 2C6CA 3FECA 4OC4A 3I6SA 4C9VA 3BXMA 4P4BA 4P45A 3S9MA 4P4IA 4NGQA 4C8TA 4C99A 4C8AA 3BI1A 4KNGE 4MCRA 4C9AA 1CX8A 3KASA 4OC0A 4NGNA 3SJGA 2OR4A 4C84A 1WVMA 4MCSA 3D7FA 4OC5A 5ELYA 2EK8A 2JBJA 4NGRA 4YN3A 4NGSA 4C9RA 4P4JA 4C85A 5F09A 3BI0A 4CDJA 3SJEA 3S9LA 2PVVA 4TJVA 4C9UA 4NGPA 4MCPA 2CIJA 3K9TA 3VTAA 4OC2A 2C6GA 1DE4C 1XF1A 4OC1A 3EIFA 4P4FA 4P4EA 5D29A 3SJXA 3D7GA 4C9EA 4C8CA 4MCQA 2XEFA 2XEIA 3IWWA 2EK9A 4TJXA 3S9NA 3ICUA 4C8FA 3I74A 3SJFA 3FF3A 4OC3A 3D7HA 4C8UA 2XEGA 1Y9ZA 4NGTA 4CDKA 3RBUA 2C5QA 5IR2A 1V6CA 4C86A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FED A;  3FEE A;  4TWE A;  4OME A;  5IB9 A;  1Z8L A;  4W9Y A;  4P4D A;  4C8P A;  2OOT A;  3IIB A;  4JZ0 A;  2JBK A;  4X3R A;  4NGM A;  2XEJ A;  4JYW A;  4LQG A;  2C6P A;  4P44 A;  3D7D A;  3BHX A;  2PVW A;  2C6C A;  3FEC A;  4OC4 A;  3I6S A;  4C9V A;  3BXM A;  4P4B A;  4P45 A;  3S9M A;  4P4I A;  4NGQ A;  4C8T A;  4C99 A;  4C8A A;  3BI1 A;  4KNG E;  4MCR A;  4C9A A;  1CX8 A;  3KAS A;  4OC0 A;  4NGN A;  3SJG A;  2OR4 A;  4C84 A;  1WVM A;  4MCS A;  3D7F A;  4OC5 A;  5ELY A;  2EK8 A;  2JBJ A;  4NGR A;  4YN3 A;  4NGS A;  4C9R A;  4P4J A;  4C85 A;  5F09 A;  3BI0 A;  4CDJ A;  3SJE A;  3S9L A;  2PVV A;  4TJV A;  4C9U A;  4NGP A;  4MCP A;  2CIJ A;  3VTA A;  4OC2 A;  2C6G A;  1DE4 C;  1XF1 A;  4OC1 A;  3EIF A;  4P4F A;  4P4E A;  5D29 A;  3SJX A;  3D7G A;  4C9E A;  4C8C A;  4MCQ A;  2XEF A;  2XEI A;  3IWW A;  2EK9 A;  4TJX A;  3S9N A;  3ICU A;  4C8F A;  3I74 A;  3SJF A;  3FF3 A;  4OC3 A;  3D7H A;  4C8U A;  2XEG A;  1Y9Z A;  4NGT A;  4CDK A;  3RBU A;  1V6C A;  4C86 A; 
#chains in the Genus database with same CATH topology
 3FED A;  3FEE A;  5K99 A;  2X0S A;  1BXR B;  4TWE A;  4OME A;  1ZRS A;  4E94 A;  5IB9 A;  1Z8L A;  3TLG B;  1J3L A;  2B0A A;  1VBH A;  4W9Y A;  4P4D A;  4C8P A;  1CS0 B;  2AUN A;  5JVL A;  2FM4 A;  2OOT A;  3TLG A;  3IIB A;  4JZ0 A;  2JBK A;  4X3R A;  3TYX A;  4NGM A;  2XEJ A;  4INJ A;  4JYW A;  4LQG A;  3GJZ A;  2C6P A;  4P44 A;  3D7D A;  4CO9 A;  3SR3 A;  3BHX A;  2R82 A;  2OLS A;  2GP4 A;  2PVW A;  3C8O A;  2C6C A;  3EZE A;  3FEC A;  4OC4 A;  3I6S A;  4C9V A;  3BXM A;  2YJT A;  1EZA A;  3TLZ A;  4P4B A;  4P45 A;  2EZA A;  3S9M A;  4P4I A;  4NGQ A;  1C3O B;  5F9M A;  4C8T A;  1NXJ A;  3EZB A;  4C99 A;  5F5X A;  4C8A A;  4E5S A;  5JYB A;  3BI1 A;  1VBG A;  1KC7 A;  4MJX A;  4KNG E;  4MCR A;  4JVO A;  2EZC A;  3T05 A;  4C9A A;  3U1B A;  4EYS A;  1CX8 A;  3KAS A;  4OC0 A;  4NGN A;  1C30 B;  3SJG A;  1GGO A;  1EZB A;  1A9X B;  3TLA A;  2OR4 A;  5F1Y A;  4COB A;  4J0N A;  2EZB A;  4C84 A;  1WVM A;  2DIK A;  1T36 B;  2HI6 A;  4MCS A;  3D7F A;  4OC5 A;  5ELY A;  2EK8 A;  2JBJ A;  4NGR A;  2MP0 A;  4YN3 A;  2PCN A;  4NGS A;  3G23 A;  4P4J A;  3T0T A;  3TLB A;  3BI0 A;  1ZYM A;  1ZL0 A;  4C9R A;  4C85 A;  3TLE A;  1JDB C;  4CDJ A;  3SJE A;  3K4I A;  3S9L A;  3TLY A;  4CZ1 A;  2PVV A;  4TJV A;  4C9U A;  4H1H A;  1JDE A;  4NGP A;  2HWG A;  4MCP A;  4IIY A;  2CIJ A;  3K9T A;  2E28 A;  3VTA A;  4OC2 A;  2C6G A;  1R61 A;  1NBW A;  1DE4 C;  3EZA A;  1XF1 A;  2D0P A;  4M8D A;  4OC1 A;  3EIF A;  2D0O A;  4MI1 A;  4P4F A;  4P4E A;  1VI4 A;  2AUM A;  1M6V B;  5D29 A;  1KEE B;  3D7G A;  5FD8 A;  3SJX A;  4C9E A;  4COG A;  4C8C A;  1DIK A;  4MCQ A;  4IIX A;  2XEF A;  2XEI A;  3IWW A;  2EK9 A;  3T5M A;  4TJX A;  3S9N A;  3ICU A;  4C8F A;  3I74 A;  3SJF A;  3NOJ A;  3FF3 A;  3TLC A;  3T07 A;  4OC3 A;  2HRO A;  3D7H A;  1Q5X A;  4C8U A;  2XEG A;  1Y9Z A;  4NGT A;  4CDK A;  5F09 A;  3KRV A;  3RBU A;  2C5Q A;  5IR2 A;  1V6C A;  4C86 A;  1KBL A;  1CE8 B;  2YJV A; 
#chains in the Genus database with same CATH homology
 3FED A;  3FEE A;  4TWE A;  4OME A;  5IB9 A;  1Z8L A;  4W9Y A;  4P4D A;  4C8P A;  2OOT A;  3IIB A;  4JZ0 A;  2JBK A;  4X3R A;  4NGM A;  2XEJ A;  4JYW A;  4LQG A;  2C6P A;  4P44 A;  3D7D A;  3BHX A;  2GP4 A;  2PVW A;  2C6C A;  3FEC A;  4OC4 A;  3I6S A;  4C9V A;  3BXM A;  4P4B A;  4P45 A;  3S9M A;  4P4I A;  4NGQ A;  4C8T A;  4C99 A;  4C8A A;  3BI1 A;  4KNG E;  4MCR A;  4C9A A;  1CX8 A;  3KAS A;  4OC0 A;  4NGN A;  3SJG A;  2OR4 A;  4C84 A;  1WVM A;  4MCS A;  3D7F A;  4OC5 A;  5ELY A;  2EK8 A;  2JBJ A;  4NGR A;  4YN3 A;  4NGS A;  4C9R A;  4P4J A;  4C85 A;  5F09 A;  3BI0 A;  4CDJ A;  3SJE A;  3S9L A;  2PVV A;  4TJV A;  4C9U A;  4NGP A;  4MCP A;  2CIJ A;  3K9T A;  3VTA A;  4OC2 A;  2C6G A;  1DE4 C;  1XF1 A;  4OC1 A;  3EIF A;  4P4F A;  4P4E A;  5D29 A;  3SJX A;  3D7G A;  4C9E A;  4C8C A;  4MCQ A;  2XEF A;  2XEI A;  3IWW A;  2EK9 A;  4TJX A;  3S9N A;  3ICU A;  4C8F A;  3I74 A;  3SJF A;  3FF3 A;  4OC3 A;  3D7H A;  4C8U A;  2XEG A;  1Y9Z A;  4NGT A;  4CDK A;  3RBU A;  2C5Q A;  5IR2 A;  1V6C A;  4C86 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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