4C85A

Zebrafish znrf3 ectodomain crystal form ii
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
151
structure length
143
Chain Sequence
DTAFVEVVLFESSPNGDYTTYTTGLQGRFSRAGATISAEGEIVQMHPLGDLYEYGWVGVVKLEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQVSEDPLKRPVVYVKGADAVKLMNIVNKQKVARARIQHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
molecule tags Ligase
source organism Danio rerio
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
total genus 36
structure length 143
sequence length 151
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c85A00
4P4DA 2EK9A 4CDJA 2XEFA 4NGMA 3BXMA 3I6SA 5ELYA 3S9NA 4TJXA 2XEGA 4C8UA 2CIJA 3D7HA 2OOTA 3IWWA 4C8FA 4P4IA 4OC0A 4TWEA 4NGRA 4NGTA 4OC1A 3FEDA 2XEIA 3KASA 3FECA 4P44A 4NGSA 2JBJA 3FEEA 3IIBA 4OC5A 4C8AA 3SJEA 3SJFA 3SJGA 1DE4C 3BI1A 4OMEA 4C86A 3FF3A 2XEJA 3D7FA 4JYWA 4CDKA 1WVMA 4W9YA 1CX8A 4C8CA 2JBKA 4C85A 4C9RA 3S9LA 4C8PA 4LQGA 2OR4A 4NGPA 3BI0A 1XF1A 4C99A 3D7DA 3I74A 2C6GA 4P4FA 4OC4A 2C6CA 4C9EA 1V6CA 4MCQA 4YN3A 5IB9A 4JZ0A 4MCPA 4P4JA 4P4EA 5F09A 4C9UA 4C9AA 3EIFA 4MCSA 3VTAA 2PVVA 4C84A 4KNGE 2C6PA 4NGQA 3D7GA 4P45A 4MCRA 4P4BA 3S9MA 3RBUA 2PVWA 1Y9ZA 4TJVA 4X3RA 4C9VA 4NGNA 4C8TA 5D29A 1Z8LA 2EK8A 3SJXA 4OC3A 3BHXA 4OC2A 3ICUA
chains in the Genus database with same CATH superfamily
2DIKA 3C8OA 4P4DA 2EK9A 3T5MA 3TYXA 4CDJA 2MP0A 2YJTA 3TLYA 2XEFA 4NGMA 4COBA 5IR2A 3BXMA 3I6SA 3KRVA 5ELYA 3S9NA 1R61A 4JVOA 2XEGA 4TJXA 4C8UA 2CIJA 2AUMA 3D7HA 2OOTA 3IWWA 3TLCA 1NBWA 4C8FA 5FD8A 4P4IA 5F1YA 4OC0A 1J3LA 4TWEA 1M6VB 4NGRA 4IIXA 4EYSA 4NGTA 4OC1A 3FEDA 1A9XB 2XEIA 1DIKA 3EZEA 3KASA 3FECA 3T05A 4P44A 1KBLA 4NGSA 2JBJA 3FEEA 3IIBA 4OC5A 4C8AA 4MI1A 1ZYMA 1EZAA 1KC7A 3SJEA 3TLAA 4E5SA 3SJFA 2X0SA 3SJGA 1NXJA 1C30B 1VI4A 1DE4C 3BI1A 3K9TA 4M8DA 4OMEA 5K99A 4C86A 2GP4A 3TLGA 3FF3A 2XEJA 3D7FA 3NOJA 4JYWA 4CDKA 1WVMA 1CX8A 1ZRSA 4W9YA 4CZ1A 2D0OA 1JDBC 1EZBA 4C8CA 3K4IA 2JBKA 4C85A 4COGA 4C9RA 3S9LA 4C8PA 5JVLA 4LQGA 2OR4A 2AUNA 4NGPA 3BI0A 2OLSA 2HWGA 1XF1A 2EZBA 4C99A 3D7DA 3I74A 3U1BA 2C6GA 4J0NA 4P4FA 3TLBA 4OC4A 2C6CA 3TLGB 4C9EA 1V6CA 4INJA 4MCQA 4YN3A 2HI6A 4MJXA 2D0PA 5IB9A 4E94A 4JZ0A 4MCPA 4P4JA 4P4EA 5F09A 4C9UA 4C9AA 5JYBA 1Q5XA 3GJZA 3EIFA 1GGOA 4MCSA 3VTAA 1CE8B 1VBHA 1ZL0A 2PVVA 1CS0B 3EZAA 4C84A 4KNGE 2C6PA 2FM4A 4NGQA 2EZAA 1C3OB 3D7GA 4IIYA 3TLZA 3TLEA 4P45A 4MCRA 2B0AA 4P4BA 5F5XA 3S9MA 4CO9A 3RBUA 2PVWA 1KEEB 2R82A 1Y9ZA 4TJVA 2YJVA 3T0TA 3EZBA 4X3RA 3T07A 4C9VA 1JDEA 3SR3A 4NGNA 3G23A 4C8TA 2HROA 4H1HA 1VBGA 1Z8LA 5D29A 2E28A 2PCNA 2EK8A 3SJXA 4OC3A 3BHXA 5F9MA 1BXRB 4OC2A 2EZCA 3ICUA 1T36B 2C5QA
chains in the Genus database with same CATH topology
4P4DA 2EK9A 4CDJA 2XEFA 4NGMA 5IR2A 3BXMA 3I6SA 5ELYA 3S9NA 4TJXA 2XEGA 4C8UA 2CIJA 3D7HA 2OOTA 3IWWA 4C8FA 4P4IA 4OC0A 4TWEA 4NGRA 4NGTA 4OC1A 3FEDA 2XEIA 3KASA 3FECA 4P44A 4NGSA 2JBJA 3FEEA 3IIBA 4OC5A 4C8AA 3SJEA 3SJFA 3SJGA 1DE4C 3BI1A 3K9TA 4OMEA 4C86A 2GP4A 3FF3A 2XEJA 3D7FA 4JYWA 4CDKA 1WVMA 1CX8A 4W9YA 4C8CA 2JBKA 4C85A 4C9RA 3S9LA 4C8PA 4LQGA 2OR4A 4NGPA 3BI0A 1XF1A 4C99A 3D7DA 3I74A 2C6GA 4P4FA 4OC4A 2C6CA 4C9EA 1V6CA 4MCQA 4YN3A 5IB9A 4JZ0A 4MCPA 4P4JA 4P4EA 5F09A 4C9UA 4C9AA 3EIFA 4MCSA 3VTAA 2PVVA 4C84A 4KNGE 2C6PA 4NGQA 3D7GA 4P45A 4MCRA 4P4BA 3S9MA 3RBUA 2PVWA 1Y9ZA 4TJVA 4X3RA 4C9VA 4NGNA 4C8TA 1Z8LA 5D29A 2EK8A 3SJXA 4OC3A 3BHXA 4OC2A 3ICUA 2C5QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P4D A;  2EK9 A;  4CDJ A;  2XEF A;  4NGM A;  3BXM A;  3I6S A;  5ELY A;  3S9N A;  4TJX A;  2XEG A;  4C8U A;  2CIJ A;  3D7H A;  2OOT A;  3IWW A;  4C8F A;  4P4I A;  4OC0 A;  4TWE A;  4NGR A;  4NGT A;  4OC1 A;  3FED A;  2XEI A;  3KAS A;  3FEC A;  4P44 A;  4NGS A;  2JBJ A;  3FEE A;  3IIB A;  4OC5 A;  4C8A A;  3SJE A;  3SJF A;  3SJG A;  1DE4 C;  3BI1 A;  4OME A;  4C86 A;  3FF3 A;  2XEJ A;  3D7F A;  4JYW A;  4CDK A;  1WVM A;  4W9Y A;  1CX8 A;  4C8C A;  2JBK A;  4C85 A;  4C9R A;  3S9L A;  4C8P A;  4LQG A;  2OR4 A;  4NGP A;  3BI0 A;  1XF1 A;  4C99 A;  3D7D A;  3I74 A;  2C6G A;  4P4F A;  4OC4 A;  2C6C A;  4C9E A;  1V6C A;  4MCQ A;  4YN3 A;  5IB9 A;  4JZ0 A;  4MCP A;  4P4J A;  4P4E A;  5F09 A;  4C9U A;  4C9A A;  3EIF A;  4MCS A;  3VTA A;  2PVV A;  4C84 A;  4KNG E;  2C6P A;  4NGQ A;  3D7G A;  4P45 A;  4MCR A;  4P4B A;  3S9M A;  3RBU A;  2PVW A;  1Y9Z A;  4TJV A;  4X3R A;  4C9V A;  4NGN A;  4C8T A;  5D29 A;  1Z8L A;  2EK8 A;  3SJX A;  4OC3 A;  3BHX A;  4OC2 A;  3ICU A; 
#chains in the Genus database with same CATH topology
 2DIK A;  3C8O A;  4P4D A;  2EK9 A;  3T5M A;  3TYX A;  4CDJ A;  2MP0 A;  2YJT A;  3TLY A;  2XEF A;  4NGM A;  4COB A;  5IR2 A;  3BXM A;  3I6S A;  3KRV A;  5ELY A;  3S9N A;  1R61 A;  4JVO A;  2XEG A;  4TJX A;  4C8U A;  2CIJ A;  2AUM A;  3D7H A;  2OOT A;  3IWW A;  3TLC A;  1NBW A;  4C8F A;  5FD8 A;  4P4I A;  5F1Y A;  4OC0 A;  1J3L A;  4TWE A;  1M6V B;  4NGR A;  4IIX A;  4EYS A;  4NGT A;  4OC1 A;  3FED A;  1A9X B;  2XEI A;  1DIK A;  3EZE A;  3KAS A;  3FEC A;  3T05 A;  4P44 A;  1KBL A;  4NGS A;  2JBJ A;  3FEE A;  3IIB A;  4OC5 A;  4C8A A;  4MI1 A;  1ZYM A;  1EZA A;  1KC7 A;  3SJE A;  3TLA A;  4E5S A;  3SJF A;  2X0S A;  3SJG A;  1NXJ A;  1C30 B;  1VI4 A;  1DE4 C;  3BI1 A;  3K9T A;  4M8D A;  4OME A;  5K99 A;  4C86 A;  2GP4 A;  3TLG A;  3FF3 A;  2XEJ A;  3D7F A;  3NOJ A;  4JYW A;  4CDK A;  1WVM A;  1CX8 A;  1ZRS A;  4W9Y A;  4CZ1 A;  2D0O A;  1JDB C;  1EZB A;  4C8C A;  3K4I A;  2JBK A;  4C85 A;  4COG A;  4C9R A;  3S9L A;  4C8P A;  5JVL A;  4LQG A;  2OR4 A;  2AUN A;  4NGP A;  3BI0 A;  2OLS A;  2HWG A;  1XF1 A;  2EZB A;  4C99 A;  3D7D A;  3I74 A;  3U1B A;  2C6G A;  4J0N A;  4P4F A;  3TLB A;  4OC4 A;  2C6C A;  3TLG B;  4C9E A;  1V6C A;  4INJ A;  4MCQ A;  4YN3 A;  2HI6 A;  4MJX A;  2D0P A;  5IB9 A;  4E94 A;  4JZ0 A;  4MCP A;  4P4J A;  4P4E A;  5F09 A;  4C9U A;  4C9A A;  5JYB A;  1Q5X A;  3GJZ A;  3EIF A;  1GGO A;  4MCS A;  3VTA A;  1CE8 B;  1VBH A;  1ZL0 A;  2PVV A;  1CS0 B;  3EZA A;  4C84 A;  4KNG E;  2C6P A;  2FM4 A;  4NGQ A;  2EZA A;  1C3O B;  3D7G A;  4IIY A;  3TLZ A;  3TLE A;  4P45 A;  4MCR A;  2B0A A;  4P4B A;  5F5X A;  3S9M A;  4CO9 A;  3RBU A;  2PVW A;  1KEE B;  2R82 A;  1Y9Z A;  4TJV A;  2YJV A;  3T0T A;  3EZB A;  4X3R A;  3T07 A;  4C9V A;  1JDE A;  3SR3 A;  4NGN A;  3G23 A;  4C8T A;  2HRO A;  4H1H A;  1VBG A;  1Z8L A;  5D29 A;  2E28 A;  2PCN A;  2EK8 A;  3SJX A;  4OC3 A;  3BHX A;  5F9M A;  1BXR B;  4OC2 A;  2EZC A;  3ICU A;  1T36 B;  2C5Q A; 
#chains in the Genus database with same CATH homology
 4P4D A;  2EK9 A;  4CDJ A;  2XEF A;  4NGM A;  5IR2 A;  3BXM A;  3I6S A;  5ELY A;  3S9N A;  4TJX A;  2XEG A;  4C8U A;  2CIJ A;  3D7H A;  2OOT A;  3IWW A;  4C8F A;  4P4I A;  4OC0 A;  4TWE A;  4NGR A;  4NGT A;  4OC1 A;  3FED A;  2XEI A;  3KAS A;  3FEC A;  4P44 A;  4NGS A;  2JBJ A;  3FEE A;  3IIB A;  4OC5 A;  4C8A A;  3SJE A;  3SJF A;  3SJG A;  1DE4 C;  3BI1 A;  3K9T A;  4OME A;  4C86 A;  2GP4 A;  3FF3 A;  2XEJ A;  3D7F A;  4JYW A;  4CDK A;  1WVM A;  1CX8 A;  4W9Y A;  4C8C A;  2JBK A;  4C85 A;  4C9R A;  3S9L A;  4C8P A;  4LQG A;  2OR4 A;  4NGP A;  3BI0 A;  1XF1 A;  4C99 A;  3D7D A;  3I74 A;  2C6G A;  4P4F A;  4OC4 A;  2C6C A;  4C9E A;  1V6C A;  4MCQ A;  4YN3 A;  5IB9 A;  4JZ0 A;  4MCP A;  4P4J A;  4P4E A;  5F09 A;  4C9U A;  4C9A A;  3EIF A;  4MCS A;  3VTA A;  2PVV A;  4C84 A;  4KNG E;  2C6P A;  4NGQ A;  3D7G A;  4P45 A;  4MCR A;  4P4B A;  3S9M A;  3RBU A;  2PVW A;  1Y9Z A;  4TJV A;  4X3R A;  4C9V A;  4NGN A;  4C8T A;  1Z8L A;  5D29 A;  2EK8 A;  3SJX A;  4OC3 A;  3BHX A;  4OC2 A;  3ICU A;  2C5Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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