4COBA

Crystal structure kynurenine formamidase from pseudomonas aeruginosa
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
206
structure length
206
Chain Sequence
RYWDISPALDPNTPTWPGDTPFQQEWAARLDEQCPVNVGRITLSPHTGAHVDGPLHYRADGLPIGQVPLDVYMGPCRVIHCIGANPLVTPEHLAGQLDDLPSRVLLRTFERVPANWPEGFCAIAPATIECLAERGVRLVGIDTPSLDPQHSKTLDAHHAVGRHGMAILEGVVLDDVPAGDYELLALPLKFTHLDASPVRAVLRALP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Pseudomonas aeruginosa
publication title Structure of Bacterial Kynurenine Formamidase Reveals a Crowded Binuclear-Zinc Catalytic Site Primed to Generate a Potent Nucleophile.
pubmed doi rcsb
molecule keywords KYNURENINE FORMAMIDASE
total genus 53
structure length 206
sequence length 206
chains with identical sequence B
ec nomenclature ec 3.5.1.9: Arylformamidase.
pdb deposition date 2014-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 4cobA00
4CZ1A 4COGA 2B0AA 4J0NA 3KRVA 1R61A 4M8DA 4CO9A 4COBA
chains in the Genus database with same CATH superfamily
4MCRA 3TLAA 1CX8A 2XEIA 4C8PA 2HROA 2C6CA 3D7FA 1KC7A 4INJA 4TJVA 2C6PA 1Y9ZA 4YN3A 1VBHA 3BHXA 2XEJA 3K9TA 4NGQA 5JYBA 1EZAA 1Q5XA 4IIXA 2CIJA 5K99A 4W9YA 3FECA 1C30B 4TWEA 2AUNA 2XEGA 2AUMA 4C8TA 4C99A 3S9NA 3BI0A 1KEEB 1CE8B 3I6SA 1JDBC 1C3OB 1KBLA 1J3LA 1DIKA 4C9UA 4MCQA 2EK9A 3EIFA 3C8OA 4C8FA 2D0OA 4NGTA 4J0NA 4CDJA 4MCPA 2PVWA 3GJZA 3S9MA 3TLYA 5IB9A 2JBKA 3TLCA 3EZBA 4NGSA 3SJEA 4C8AA 3T5MA 3FEDA 2GP4A 4C9AA 2XEFA 3ICUA 4C8UA 3BXMA 2OLSA 2OR4A 2EZAA 2HWGA 3D7HA 4E94A 1V6CA 3NOJA 4OC0A 4C8CA 3T0TA 4CZ1A 3TLGA 3S9LA 4C85A 4M8DA 2HI6A 4CO9A 3TLZA 4P4IA 4JZ0A 5IR2A 2YJTA 3D7GA 4P4EA 1GGOA 1WVMA 4C86A 4NGNA 4TJXA 5JVLA 4C84A 3KRVA 3SJXA 4MJXA 4OMEA 5F9MA 1ZL0A 3TLGB 4IIYA 2D0PA 3FEEA 4OC4A 3VTAA 3T07A 3D7DA 2PVVA 1EZBA 4NGMA 4P4BA 2EZCA 2C5QA 4MI1A 4JVOA 1CS0B 4NGRA 2JBJA 4C9VA 4MCSA 3U1BA 2EK8A 3IWWA 4CDKA 4P4DA 4P4JA 3EZAA 3SJGA 2C6GA 2MP0A 3G23A 4X3RA 3TLEA 2DIKA 1T36B 1ZRSA 4OC2A 5F1YA 1NBWA 1DE4C 1VBGA 5ELYA 2B0AA 2PCNA 1BXRB 1R61A 4JYWA 4OC3A 1Z8LA 4E5SA 2R82A 4KNGE 1A9XB 5F5XA 1NXJA 4P45A 4COGA 5FD8A 3K4IA 2E28A 1JDEA 3KASA 4LQGA 4EYSA 4NGPA 3IIBA 4P4FA 2EZBA 2X0SA 4OC5A 4P44A 3T05A 3I74A 2OOTA 3SR3A 5D29A 4OC1A 5F09A 1M6VB 2YJVA 3RBUA 4C9EA 1XF1A 4H1HA 3SJFA 3EZEA 1ZYMA 3TYXA 2FM4A 4C9RA 3BI1A 1VI4A 3TLBA 4COBA 3FF3A
chains in the Genus database with same CATH topology
4CZ1A 4COGA 2B0AA 4J0NA 3KRVA 1R61A 4M8DA 4CO9A 4COBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CZ1 A;  4COG A;  2B0A A;  4J0N A;  3KRV A;  1R61 A;  4M8D A;  4CO9 A;  4COB A; 
#chains in the Genus database with same CATH topology
 4MCR A;  3TLA A;  1CX8 A;  2XEI A;  4C8P A;  2HRO A;  2C6C A;  3D7F A;  1KC7 A;  4INJ A;  4TJV A;  2C6P A;  1Y9Z A;  4YN3 A;  1VBH A;  3BHX A;  2XEJ A;  3K9T A;  4NGQ A;  5JYB A;  1EZA A;  1Q5X A;  4IIX A;  2CIJ A;  5K99 A;  4W9Y A;  3FEC A;  1C30 B;  4TWE A;  2AUN A;  2XEG A;  2AUM A;  4C8T A;  4C99 A;  3S9N A;  3BI0 A;  1KEE B;  1CE8 B;  3I6S A;  1JDB C;  1C3O B;  1KBL A;  1J3L A;  1DIK A;  4C9U A;  4MCQ A;  2EK9 A;  3EIF A;  3C8O A;  4C8F A;  2D0O A;  4NGT A;  4J0N A;  4CDJ A;  4MCP A;  2PVW A;  3GJZ A;  3S9M A;  3TLY A;  5IB9 A;  2JBK A;  3TLC A;  3EZB A;  4NGS A;  3SJE A;  4C8A A;  3T5M A;  3FED A;  2GP4 A;  4C9A A;  2XEF A;  3ICU A;  4C8U A;  3BXM A;  2OLS A;  2OR4 A;  2EZA A;  2HWG A;  3D7H A;  4E94 A;  1V6C A;  3NOJ A;  4OC0 A;  4C8C A;  3T0T A;  4CZ1 A;  3TLG A;  3S9L A;  4C85 A;  4M8D A;  2HI6 A;  4CO9 A;  3TLZ A;  4P4I A;  4JZ0 A;  5IR2 A;  2YJT A;  3D7G A;  4P4E A;  1GGO A;  1WVM A;  4C86 A;  4NGN A;  4TJX A;  5JVL A;  4C84 A;  3KRV A;  3SJX A;  4MJX A;  4OME A;  5F9M A;  1ZL0 A;  3TLG B;  4IIY A;  2D0P A;  3FEE A;  4OC4 A;  3VTA A;  3T07 A;  3D7D A;  2PVV A;  1EZB A;  4NGM A;  4P4B A;  2EZC A;  2C5Q A;  4MI1 A;  4JVO A;  1CS0 B;  4NGR A;  2JBJ A;  4C9V A;  4MCS A;  3U1B A;  2EK8 A;  3IWW A;  4CDK A;  4P4D A;  4P4J A;  3EZA A;  3SJG A;  2C6G A;  2MP0 A;  3G23 A;  4X3R A;  3TLE A;  2DIK A;  1T36 B;  1ZRS A;  4OC2 A;  5F1Y A;  1NBW A;  1DE4 C;  1VBG A;  5ELY A;  2B0A A;  2PCN A;  1BXR B;  1R61 A;  4JYW A;  4OC3 A;  1Z8L A;  4E5S A;  2R82 A;  4KNG E;  1A9X B;  5F5X A;  1NXJ A;  4P45 A;  4COG A;  5FD8 A;  3K4I A;  2E28 A;  1JDE A;  3KAS A;  4LQG A;  4EYS A;  4NGP A;  3IIB A;  4P4F A;  2EZB A;  2X0S A;  4OC5 A;  4P44 A;  3T05 A;  3I74 A;  2OOT A;  3SR3 A;  5D29 A;  4OC1 A;  5F09 A;  1M6V B;  2YJV A;  3RBU A;  4C9E A;  1XF1 A;  4H1H A;  3SJF A;  3EZE A;  1ZYM A;  3TYX A;  2FM4 A;  4C9R A;  3BI1 A;  1VI4 A;  3TLB A;  4COB A;  3FF3 A; 
#chains in the Genus database with same CATH homology
 4CZ1 A;  4COG A;  2B0A A;  4J0N A;  3KRV A;  1R61 A;  4M8D A;  4CO9 A;  4COB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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