4TJVA

Crystal structure of protease-associated domain of arabidopsis vacuolar sorting receptor 1
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
165
structure length
165
Chain Sequence
GSRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPHP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
source organism Arabidopsis thaliana
publication title How vacuolar sorting receptor proteins interact with their cargo proteins: crystal structures of apo and cargo-bound forms of the protease-associated domain from an Arabidopsis vacuolar sorting receptor.
pubmed doi rcsb
molecule keywords Vacuolar-sorting receptor 1
total genus 47
structure length 165
sequence length 165
ec nomenclature
pdb deposition date 2014-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02225 PA PA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4tjvA00
4C86A 2OR4A 3IWWA 4C9UA 3RBUA 3VTAA 4P44A 2JBKA 4P4BA 5F09A 4C9EA 1Y9ZA 3BI0A 3BXMA 3I74A 4C9AA 2XEJA 3FEDA 2XEFA 3ICUA 4C8CA 3EIFA 4X3RA 3SJEA 3S9NA 4C8UA 4YN3A 3IIBA 4C84A 4C9VA 4NGPA 4OC1A 4NGMA 2PVVA 4P4JA 5ELYA 2XEGA 4OMEA 3SJFA 1DE4C 4NGQA 4C9RA 4P4FA 3S9MA 2PVWA 2C6GA 3KASA 4P45A 4C8TA 1V6CA 2EK8A 1XF1A 4OC0A 2CIJA 3BHXA 3FECA 4NGNA 4CDJA 4P4IA 4NGTA 3SJXA 4MCPA 3SJGA 5D29A 1Z8LA 4TWEA 3D7GA 4NGSA 2C6CA 4KNGE 4C8AA 4MCSA 3D7DA 3I6SA 4JYWA 4C8PA 4TJVA 2XEIA 3FEEA 4OC2A 3D7HA 4OC4A 4CDKA 3FF3A 3S9LA 5IB9A 4MCQA 4OC5A 2EK9A 3BI1A 2JBJA 1CX8A 4C99A 2C6PA 3D7FA 4W9YA 4C85A 4OC3A 4P4EA 4MCRA 4NGRA 4LQGA 4C8FA 2OOTA 4TJXA 4P4DA 1WVMA 4JZ0A
chains in the Genus database with same CATH superfamily
1DIKA 4C86A 2OR4A 1Q5XA 3IWWA 4C9UA 2R82A 3RBUA 3K9TA 5F1YA 3VTAA 1NBWA 1ZYMA 4P44A 4CZ1A 2JBKA 4P4BA 5F09A 4C9EA 1Y9ZA 1JDEA 3BI0A 1CE8B 3BXMA 3I74A 3GJZA 4C9AA 2PCNA 3TYXA 3U1BA 2XEJA 3FEDA 2XEFA 3ICUA 4C8CA 4CO9A 3EIFA 4X3RA 2AUNA 4MJXA 3SJEA 3S9NA 4C8UA 4EYSA 4YN3A 4E94A 4J0NA 4C84A 4C9VA 1ZRSA 1C30B 1A9XB 4NGPA 4OC1A 4COGA 4COBA 1VI4A 2X0SA 3TLYA 4NGMA 3TLZA 1R61A 2PVVA 2OOTA 1BXRB 1J3LA 4P4JA 5ELYA 2XEGA 4OMEA 3SJFA 5JVLA 1DE4C 2D0OA 4NGQA 4C9RA 4P4FA 3S9MA 2DIKA 2PVWA 4IIYA 3TLGB 2C6GA 3EZEA 3KASA 1KEEB 4P45A 5FD8A 4C8TA 1M6VB 2E28A 1V6CA 1VBGA 2HROA 4M8DA 2EZAA 4E5SA 5JYBA 2AUMA 2HI6A 2EK8A 1XF1A 4JVOA 4OC0A 2CIJA 3BHXA 3TLGA 3FECA 3SR3A 4NGNA 3EZBA 4IIXA 1NXJA 2MP0A 4CDJA 4P4IA 4NGTA 5F5XA 4JZ0A 4MI1A 3SJXA 2HWGA 4MCPA 3SJGA 3EZAA 1T36B 1C3OB 1EZAA 5D29A 3C8OA 1CS0B 1Z8LA 1KC7A 4TWEA 3T05A 2GP4A 1GGOA 1VBHA 1ZL0A 2FM4A 3D7GA 4NGSA 5K99A 2B0AA 2C6CA 4KNGE 4C8AA 2OLSA 1JDBC 4MCSA 3D7DA 5F9MA 3I6SA 2D0PA 3NOJA 3T5MA 4JYWA 1KBLA 4C8PA 3K4IA 4TJVA 2XEIA 3FEEA 4OC2A 5IR2A 2C5QA 3D7HA 3KRVA 4INJA 3TLEA 4OC4A 4CDKA 3FF3A 3S9LA 5IB9A 3TLBA 4MCQA 4OC5A 3T0TA 3TLAA 2EZCA 2EK9A 2YJVA 3BI1A 2JBJA 1CX8A 4C99A 2C6PA 3D7FA 4W9YA 3T07A 4C85A 4OC3A 3TLCA 4P4EA 2YJTA 1EZBA 4MCRA 2EZBA 4NGRA 3G23A 4LQGA 4C8FA 4H1HA 4TJXA 4P4DA 1WVMA 3IIBA
chains in the Genus database with same CATH topology
4C86A 2OR4A 3IWWA 4C9UA 3RBUA 3K9TA 3VTAA 4P44A 2JBKA 4P4BA 5F09A 4C9EA 1Y9ZA 3BI0A 3BXMA 3I74A 4C9AA 2XEJA 3FEDA 2XEFA 3ICUA 4C8CA 3EIFA 4X3RA 3SJEA 3S9NA 4C8UA 4YN3A 3IIBA 4C84A 4C9VA 4NGPA 4OC1A 4NGMA 2PVVA 4P4JA 5ELYA 2XEGA 4OMEA 3SJFA 1DE4C 4NGQA 4C9RA 4P4FA 3S9MA 2PVWA 2C6GA 3KASA 4P45A 4C8TA 1V6CA 2EK8A 1XF1A 4OC0A 2CIJA 3BHXA 3FECA 4NGNA 4CDJA 4P4IA 4NGTA 3SJXA 4MCPA 3SJGA 5D29A 1Z8LA 4TWEA 2GP4A 3D7GA 4NGSA 2C6CA 4KNGE 4C8AA 4MCSA 3D7DA 3I6SA 4JYWA 4C8PA 4TJVA 2XEIA 3FEEA 4OC2A 5IR2A 2C5QA 3D7HA 4OC4A 4CDKA 3FF3A 3S9LA 5IB9A 4MCQA 4OC5A 2EK9A 3BI1A 2JBJA 1CX8A 4C99A 2C6PA 3D7FA 4W9YA 4C85A 4OC3A 4P4EA 4MCRA 4NGRA 4LQGA 4C8FA 2OOTA 4TJXA 4P4DA 1WVMA 4JZ0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C86 A;  2OR4 A;  3IWW A;  4C9U A;  3RBU A;  3VTA A;  4P44 A;  2JBK A;  4P4B A;  5F09 A;  4C9E A;  1Y9Z A;  3BI0 A;  3BXM A;  3I74 A;  4C9A A;  2XEJ A;  3FED A;  2XEF A;  3ICU A;  4C8C A;  3EIF A;  4X3R A;  3SJE A;  3S9N A;  4C8U A;  4YN3 A;  3IIB A;  4C84 A;  4C9V A;  4NGP A;  4OC1 A;  4NGM A;  2PVV A;  4P4J A;  5ELY A;  2XEG A;  4OME A;  3SJF A;  1DE4 C;  4NGQ A;  4C9R A;  4P4F A;  3S9M A;  2PVW A;  2C6G A;  3KAS A;  4P45 A;  4C8T A;  1V6C A;  2EK8 A;  1XF1 A;  4OC0 A;  2CIJ A;  3BHX A;  3FEC A;  4NGN A;  4CDJ A;  4P4I A;  4NGT A;  3SJX A;  4MCP A;  3SJG A;  5D29 A;  1Z8L A;  4TWE A;  3D7G A;  4NGS A;  2C6C A;  4KNG E;  4C8A A;  4MCS A;  3D7D A;  3I6S A;  4JYW A;  4C8P A;  4TJV A;  2XEI A;  3FEE A;  4OC2 A;  3D7H A;  4OC4 A;  4CDK A;  3FF3 A;  3S9L A;  5IB9 A;  4MCQ A;  4OC5 A;  2EK9 A;  3BI1 A;  2JBJ A;  1CX8 A;  4C99 A;  2C6P A;  3D7F A;  4W9Y A;  4C85 A;  4OC3 A;  4P4E A;  4MCR A;  4NGR A;  4LQG A;  4C8F A;  2OOT A;  4TJX A;  4P4D A;  1WVM A;  4JZ0 A; 
#chains in the Genus database with same CATH topology
 1DIK A;  4C86 A;  2OR4 A;  1Q5X A;  3IWW A;  4C9U A;  2R82 A;  3RBU A;  3K9T A;  5F1Y A;  3VTA A;  1NBW A;  1ZYM A;  4P44 A;  4CZ1 A;  2JBK A;  4P4B A;  5F09 A;  4C9E A;  1Y9Z A;  1JDE A;  3BI0 A;  1CE8 B;  3BXM A;  3I74 A;  3GJZ A;  4C9A A;  2PCN A;  3TYX A;  3U1B A;  2XEJ A;  3FED A;  2XEF A;  3ICU A;  4C8C A;  4CO9 A;  3EIF A;  4X3R A;  2AUN A;  4MJX A;  3SJE A;  3S9N A;  4C8U A;  4EYS A;  4YN3 A;  4E94 A;  4J0N A;  4C84 A;  4C9V A;  1ZRS A;  1C30 B;  1A9X B;  4NGP A;  4OC1 A;  4COG A;  4COB A;  1VI4 A;  2X0S A;  3TLY A;  4NGM A;  3TLZ A;  1R61 A;  2PVV A;  2OOT A;  1BXR B;  1J3L A;  4P4J A;  5ELY A;  2XEG A;  4OME A;  3SJF A;  5JVL A;  1DE4 C;  2D0O A;  4NGQ A;  4C9R A;  4P4F A;  3S9M A;  2DIK A;  2PVW A;  4IIY A;  3TLG B;  2C6G A;  3EZE A;  3KAS A;  1KEE B;  4P45 A;  5FD8 A;  4C8T A;  1M6V B;  2E28 A;  1V6C A;  1VBG A;  2HRO A;  4M8D A;  2EZA A;  4E5S A;  5JYB A;  2AUM A;  2HI6 A;  2EK8 A;  1XF1 A;  4JVO A;  4OC0 A;  2CIJ A;  3BHX A;  3TLG A;  3FEC A;  3SR3 A;  4NGN A;  3EZB A;  4IIX A;  1NXJ A;  2MP0 A;  4CDJ A;  4P4I A;  4NGT A;  5F5X A;  4JZ0 A;  4MI1 A;  3SJX A;  2HWG A;  4MCP A;  3SJG A;  3EZA A;  1T36 B;  1C3O B;  1EZA A;  5D29 A;  3C8O A;  1CS0 B;  1Z8L A;  1KC7 A;  4TWE A;  3T05 A;  2GP4 A;  1GGO A;  1VBH A;  1ZL0 A;  2FM4 A;  3D7G A;  4NGS A;  5K99 A;  2B0A A;  2C6C A;  4KNG E;  4C8A A;  2OLS A;  1JDB C;  4MCS A;  3D7D A;  5F9M A;  3I6S A;  2D0P A;  3NOJ A;  3T5M A;  4JYW A;  1KBL A;  4C8P A;  3K4I A;  4TJV A;  2XEI A;  3FEE A;  4OC2 A;  5IR2 A;  2C5Q A;  3D7H A;  3KRV A;  4INJ A;  3TLE A;  4OC4 A;  4CDK A;  3FF3 A;  3S9L A;  5IB9 A;  3TLB A;  4MCQ A;  4OC5 A;  3T0T A;  3TLA A;  2EZC A;  2EK9 A;  2YJV A;  3BI1 A;  2JBJ A;  1CX8 A;  4C99 A;  2C6P A;  3D7F A;  4W9Y A;  3T07 A;  4C85 A;  4OC3 A;  3TLC A;  4P4E A;  2YJT A;  1EZB A;  4MCR A;  2EZB A;  4NGR A;  3G23 A;  4LQG A;  4C8F A;  4H1H A;  4TJX A;  4P4D A;  1WVM A;  3IIB A; 
#chains in the Genus database with same CATH homology
 4C86 A;  2OR4 A;  3IWW A;  4C9U A;  3RBU A;  3K9T A;  3VTA A;  4P44 A;  2JBK A;  4P4B A;  5F09 A;  4C9E A;  1Y9Z A;  3BI0 A;  3BXM A;  3I74 A;  4C9A A;  2XEJ A;  3FED A;  2XEF A;  3ICU A;  4C8C A;  3EIF A;  4X3R A;  3SJE A;  3S9N A;  4C8U A;  4YN3 A;  3IIB A;  4C84 A;  4C9V A;  4NGP A;  4OC1 A;  4NGM A;  2PVV A;  4P4J A;  5ELY A;  2XEG A;  4OME A;  3SJF A;  1DE4 C;  4NGQ A;  4C9R A;  4P4F A;  3S9M A;  2PVW A;  2C6G A;  3KAS A;  4P45 A;  4C8T A;  1V6C A;  2EK8 A;  1XF1 A;  4OC0 A;  2CIJ A;  3BHX A;  3FEC A;  4NGN A;  4CDJ A;  4P4I A;  4NGT A;  3SJX A;  4MCP A;  3SJG A;  5D29 A;  1Z8L A;  4TWE A;  2GP4 A;  3D7G A;  4NGS A;  2C6C A;  4KNG E;  4C8A A;  4MCS A;  3D7D A;  3I6S A;  4JYW A;  4C8P A;  4TJV A;  2XEI A;  3FEE A;  4OC2 A;  5IR2 A;  2C5Q A;  3D7H A;  4OC4 A;  4CDK A;  3FF3 A;  3S9L A;  5IB9 A;  4MCQ A;  4OC5 A;  2EK9 A;  3BI1 A;  2JBJ A;  1CX8 A;  4C99 A;  2C6P A;  3D7F A;  4W9Y A;  4C85 A;  4OC3 A;  4P4E A;  4MCR A;  4NGR A;  4LQG A;  4C8F A;  2OOT A;  4TJX A;  4P4D A;  1WVM A;  4JZ0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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