4C8FA

Mouse znrf3 ectodomain crystal form iv
Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
151
structure length
137
Chain Sequence
ETAFVEVVLFESSPSGDYTTHTTGLTGRFSRAGAMLSAEGEIVQMYEYGWVGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVARARIQH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (55-65)S3 (91-98)TIV1 (66-69)3H1 (126-128)S4 (117-122)TVIII1 (129-132)AH1 (136-146)TIV2 (132-135)S2 (71-82)TI1 (83-86)Updating...
connected with : NaN
molecule tags Ligase
source organism Mus musculus
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
total genus 32
structure length 137
sequence length 151
chains with identical sequence B, C, D
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c8fA00
4JZ0A 4OC3A 4OC2A 4P44A 3RBUA 2C6CA 4C9UA 4NGNA 4P4FA 2PVWA 5ELYA 4P4DA 3S9LA 4OC0A 4P4BA 4C99A 4C9AA 2C6PA 4W9YA 3D7HA 3SJGA 4C8AA 2XEFA 4NGPA 4C85A 3I74A 1DE4C 3S9NA 2XEIA 3SJEA 2PVVA 1V6CA 1WVMA 3BI0A 4KNGE 3D7DA 5F09A 4MCSA 3FEDA 4C8UA 4NGMA 3D7FA 2XEGA 2EK9A 1Z8LA 4LQGA 3SJXA 4P4IA 5D29A 4NGRA 2XEJA 4NGTA 4TJXA 3FEEA 3IWWA 3EIFA 4TWEA 4P45A 4C9VA 4C84A 2OOTA 3FECA 1CX8A 4CDKA 4C8PA 3D7GA 4NGSA 4C8CA 3SJFA 4C9EA 4CDJA 3FF3A 5IB9A 3BXMA 4C9RA 2C6GA 3I6SA 3VTAA 4P4JA 4MCRA 4JYWA 3KASA 3S9MA 2OR4A 4OC5A 4C8TA 4MCPA 4TJVA 4X3RA 1Y9ZA 2JBKA 4MCQA 4OC1A 4C86A 4NGQA 4P4EA 2JBJA 3IIBA 2EK8A 4OMEA 3BI1A 3BHXA 2CIJA 4OC4A 3ICUA 4C8FA 4YN3A 1XF1A
chains in the Genus database with same CATH superfamily
4JZ0A 2YJVA 5F9MA 3TLYA 1VBHA 4COGA 4OC3A 4OC2A 4P44A 3RBUA 2C6CA 4C9UA 3EZEA 4INJA 3TLGB 4NGNA 1R61A 2DIKA 1A9XB 2E28A 5JVLA 2X0SA 4P4FA 2PVWA 5ELYA 3G23A 4CZ1A 4P4DA 2B0AA 1NXJA 5JYBA 3S9LA 4OC0A 4IIXA 2EZBA 3T05A 4P4BA 2FM4A 1CS0B 1VBGA 4C99A 2OLSA 4C9AA 3TLCA 2C6PA 4W9YA 3D7HA 3SJGA 4C8AA 2XEFA 4NGPA 4C85A 2GP4A 1DE4C 3I74A 3TLGA 3K9TA 4E5SA 4E94A 3S9NA 2XEIA 3SJEA 1NBWA 2PVVA 1V6CA 1WVMA 3BI0A 4KNGE 3D7DA 5F09A 1VI4A 4MCSA 1M6VB 3TLBA 4J0NA 3FEDA 1ZL0A 2AUNA 1ZYMA 2HI6A 4C8UA 4NGMA 3KRVA 2D0PA 2PCNA 3TLZA 3D7FA 2XEGA 2EK9A 1Q5XA 1Z8LA 4CO9A 4EYSA 4LQGA 3SJXA 4P4IA 5D29A 4NGRA 1DIKA 2XEJA 2MP0A 4NGTA 1CE8B 2C5QA 4TJXA 2D0OA 3FEEA 3K4IA 3IWWA 3EIFA 4COBA 4TWEA 4P45A 4C9VA 3SR3A 4C84A 1C3OB 4H1HA 1JDBC 3TLAA 2EZCA 5IR2A 3FECA 2OOTA 1CX8A 3U1BA 4CDKA 4C8PA 3EZAA 3D7GA 4NGSA 4C8CA 3SJFA 4C9EA 4CDJA 1GGOA 3FF3A 5IB9A 3TYXA 3BXMA 4C9RA 5FD8A 3T5MA 2C6GA 3T07A 4IIYA 3I6SA 3VTAA 4P4JA 4MCRA 1BXRB 4JYWA 3KASA 5F1YA 3S9MA 1KBLA 3T0TA 2OR4A 2HROA 3GJZA 5K99A 4OC5A 2HWGA 3C8OA 4C8TA 1KEEB 1JDEA 4MCPA 3TLEA 4TJVA 4X3RA 4M8DA 1Y9ZA 4MI1A 2JBKA 1EZBA 2EZAA 4MCQA 1EZAA 2R82A 4OC1A 4C86A 1J3LA 4NGQA 4P4EA 2JBJA 3IIBA 2EK8A 2AUMA 2YJTA 4OMEA 3BI1A 3BHXA 3EZBA 4MJXA 4JVOA 2CIJA 1KC7A 4OC4A 3ICUA 5F5XA 1ZRSA 4C8FA 4YN3A 1XF1A 1T36B 3NOJA 1C30B
chains in the Genus database with same CATH topology
4JZ0A 4OC3A 4OC2A 4P44A 3RBUA 2C6CA 4C9UA 4NGNA 4P4FA 2PVWA 5ELYA 4P4DA 3S9LA 4OC0A 4P4BA 4C99A 4C9AA 2C6PA 4W9YA 3D7HA 3SJGA 4C8AA 2XEFA 4NGPA 4C85A 2GP4A 3I74A 1DE4C 3K9TA 3S9NA 2XEIA 3SJEA 2PVVA 1V6CA 1WVMA 3BI0A 4KNGE 3D7DA 5F09A 4MCSA 3FEDA 4C8UA 4NGMA 3D7FA 2XEGA 2EK9A 1Z8LA 4LQGA 3SJXA 4P4IA 5D29A 4NGRA 2XEJA 4NGTA 2C5QA 4TJXA 3FEEA 3IWWA 3EIFA 4TWEA 4P45A 4C9VA 4C84A 5IR2A 2OOTA 3FECA 1CX8A 4CDKA 4C8PA 3D7GA 4NGSA 4C8CA 3SJFA 4C9EA 4CDJA 3FF3A 5IB9A 3BXMA 4C9RA 2C6GA 3I6SA 3VTAA 4P4JA 4MCRA 4JYWA 3KASA 3S9MA 2OR4A 4OC5A 4C8TA 4MCPA 4TJVA 4X3RA 1Y9ZA 2JBKA 4MCQA 4OC1A 4C86A 4NGQA 4P4EA 2JBJA 3IIBA 2EK8A 4OMEA 3BI1A 3BHXA 2CIJA 4OC4A 3ICUA 4C8FA 4YN3A 1XF1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JZ0 A;  4OC3 A;  4OC2 A;  4P44 A;  3RBU A;  2C6C A;  4C9U A;  4NGN A;  4P4F A;  2PVW A;  5ELY A;  4P4D A;  3S9L A;  4OC0 A;  4P4B A;  4C99 A;  4C9A A;  2C6P A;  4W9Y A;  3D7H A;  3SJG A;  4C8A A;  2XEF A;  4NGP A;  4C85 A;  3I74 A;  1DE4 C;  3S9N A;  2XEI A;  3SJE A;  2PVV A;  1V6C A;  1WVM A;  3BI0 A;  4KNG E;  3D7D A;  5F09 A;  4MCS A;  3FED A;  4C8U A;  4NGM A;  3D7F A;  2XEG A;  2EK9 A;  1Z8L A;  4LQG A;  3SJX A;  4P4I A;  5D29 A;  4NGR A;  2XEJ A;  4NGT A;  4TJX A;  3FEE A;  3IWW A;  3EIF A;  4TWE A;  4P45 A;  4C9V A;  4C84 A;  2OOT A;  3FEC A;  1CX8 A;  4CDK A;  4C8P A;  3D7G A;  4NGS A;  4C8C A;  3SJF A;  4C9E A;  4CDJ A;  3FF3 A;  5IB9 A;  3BXM A;  4C9R A;  2C6G A;  3I6S A;  3VTA A;  4P4J A;  4MCR A;  4JYW A;  3KAS A;  3S9M A;  2OR4 A;  4OC5 A;  4C8T A;  4MCP A;  4TJV A;  4X3R A;  1Y9Z A;  2JBK A;  4MCQ A;  4OC1 A;  4C86 A;  4NGQ A;  4P4E A;  2JBJ A;  3IIB A;  2EK8 A;  4OME A;  3BI1 A;  3BHX A;  2CIJ A;  4OC4 A;  3ICU A;  4C8F A;  4YN3 A;  1XF1 A; 
#chains in the Genus database with same CATH topology
 4JZ0 A;  2YJV A;  5F9M A;  3TLY A;  1VBH A;  4COG A;  4OC3 A;  4OC2 A;  4P44 A;  3RBU A;  2C6C A;  4C9U A;  3EZE A;  4INJ A;  3TLG B;  4NGN A;  1R61 A;  2DIK A;  1A9X B;  2E28 A;  5JVL A;  2X0S A;  4P4F A;  2PVW A;  5ELY A;  3G23 A;  4CZ1 A;  4P4D A;  2B0A A;  1NXJ A;  5JYB A;  3S9L A;  4OC0 A;  4IIX A;  2EZB A;  3T05 A;  4P4B A;  2FM4 A;  1CS0 B;  1VBG A;  4C99 A;  2OLS A;  4C9A A;  3TLC A;  2C6P A;  4W9Y A;  3D7H A;  3SJG A;  4C8A A;  2XEF A;  4NGP A;  4C85 A;  2GP4 A;  1DE4 C;  3I74 A;  3TLG A;  3K9T A;  4E5S A;  4E94 A;  3S9N A;  2XEI A;  3SJE A;  1NBW A;  2PVV A;  1V6C A;  1WVM A;  3BI0 A;  4KNG E;  3D7D A;  5F09 A;  1VI4 A;  4MCS A;  1M6V B;  3TLB A;  4J0N A;  3FED A;  1ZL0 A;  2AUN A;  1ZYM A;  2HI6 A;  4C8U A;  4NGM A;  3KRV A;  2D0P A;  2PCN A;  3TLZ A;  3D7F A;  2XEG A;  2EK9 A;  1Q5X A;  1Z8L A;  4CO9 A;  4EYS A;  4LQG A;  3SJX A;  4P4I A;  5D29 A;  4NGR A;  1DIK A;  2XEJ A;  2MP0 A;  4NGT A;  1CE8 B;  2C5Q A;  4TJX A;  2D0O A;  3FEE A;  3K4I A;  3IWW A;  3EIF A;  4COB A;  4TWE A;  4P45 A;  4C9V A;  3SR3 A;  4C84 A;  1C3O B;  4H1H A;  1JDB C;  3TLA A;  2EZC A;  5IR2 A;  3FEC A;  2OOT A;  1CX8 A;  3U1B A;  4CDK A;  4C8P A;  3EZA A;  3D7G A;  4NGS A;  4C8C A;  3SJF A;  4C9E A;  4CDJ A;  1GGO A;  3FF3 A;  5IB9 A;  3TYX A;  3BXM A;  4C9R A;  5FD8 A;  3T5M A;  2C6G A;  3T07 A;  4IIY A;  3I6S A;  3VTA A;  4P4J A;  4MCR A;  1BXR B;  4JYW A;  3KAS A;  5F1Y A;  3S9M A;  1KBL A;  3T0T A;  2OR4 A;  2HRO A;  3GJZ A;  5K99 A;  4OC5 A;  2HWG A;  3C8O A;  4C8T A;  1KEE B;  1JDE A;  4MCP A;  3TLE A;  4TJV A;  4X3R A;  4M8D A;  1Y9Z A;  4MI1 A;  2JBK A;  1EZB A;  2EZA A;  4MCQ A;  1EZA A;  2R82 A;  4OC1 A;  4C86 A;  1J3L A;  4NGQ A;  4P4E A;  2JBJ A;  3IIB A;  2EK8 A;  2AUM A;  2YJT A;  4OME A;  3BI1 A;  3BHX A;  3EZB A;  4MJX A;  4JVO A;  2CIJ A;  1KC7 A;  4OC4 A;  3ICU A;  5F5X A;  1ZRS A;  4C8F A;  4YN3 A;  1XF1 A;  1T36 B;  3NOJ A;  1C30 B; 
#chains in the Genus database with same CATH homology
 4JZ0 A;  4OC3 A;  4OC2 A;  4P44 A;  3RBU A;  2C6C A;  4C9U A;  4NGN A;  4P4F A;  2PVW A;  5ELY A;  4P4D A;  3S9L A;  4OC0 A;  4P4B A;  4C99 A;  4C9A A;  2C6P A;  4W9Y A;  3D7H A;  3SJG A;  4C8A A;  2XEF A;  4NGP A;  4C85 A;  2GP4 A;  3I74 A;  1DE4 C;  3K9T A;  3S9N A;  2XEI A;  3SJE A;  2PVV A;  1V6C A;  1WVM A;  3BI0 A;  4KNG E;  3D7D A;  5F09 A;  4MCS A;  3FED A;  4C8U A;  4NGM A;  3D7F A;  2XEG A;  2EK9 A;  1Z8L A;  4LQG A;  3SJX A;  4P4I A;  5D29 A;  4NGR A;  2XEJ A;  4NGT A;  2C5Q A;  4TJX A;  3FEE A;  3IWW A;  3EIF A;  4TWE A;  4P45 A;  4C9V A;  4C84 A;  5IR2 A;  2OOT A;  3FEC A;  1CX8 A;  4CDK A;  4C8P A;  3D7G A;  4NGS A;  4C8C A;  3SJF A;  4C9E A;  4CDJ A;  3FF3 A;  5IB9 A;  3BXM A;  4C9R A;  2C6G A;  3I6S A;  3VTA A;  4P4J A;  4MCR A;  4JYW A;  3KAS A;  3S9M A;  2OR4 A;  4OC5 A;  4C8T A;  4MCP A;  4TJV A;  4X3R A;  1Y9Z A;  2JBK A;  4MCQ A;  4OC1 A;  4C86 A;  4NGQ A;  4P4E A;  2JBJ A;  3IIB A;  2EK8 A;  4OME A;  3BI1 A;  3BHX A;  2CIJ A;  4OC4 A;  3ICU A;  4C8F A;  4YN3 A;  1XF1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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