4CDJA

Structure of znrf3 ectodomain
Total Genus 40
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
153
structure length
153
Chain Sequence
KETAFVEVVLFESSPSGDYTTHTTGLTGRFSRAGAMLSAEGEIVQMHPLGLCNNNDEEDLYEYGWVGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVARARIQHL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (132-135)S3 (94-100)TI1 (69-72)S2 (74-85)3H1 (103-106)TIV1 (108-111)TII1 (117-120)AH1 (139-149)S5 (151-157)S4 (120-125)TVIII1 (135-138)3H2 (129-131)S1 (58-68)TI2 (86-89)Updating...
connected with : NaN
molecule tags Ligase
source organism Mus musculus
publication title Structures of Wnt-Antagonist Znrf3 and its Complex with R-Spondin 1 and Implications for Signaling.
pubmed doi rcsb
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
total genus 40
structure length 153
sequence length 153
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4cdjA00
2XEJA 2C6CA 4YN3A 4TJVA 4P45A 4P4DA 3S9LA 4P4JA 1XF1A 3BHXA 4W9YA 4C9EA 3SJFA 1DE4C 4C9VA 4C9AA 3FF3A 4KNGE 2CIJA 4MCRA 4MCSA 5IB9A 4C9UA 3S9NA 3I74A 4P4BA 5F09A 4NGPA 4NGMA 4NGQA 3SJXA 4C8FA 4C9RA 4TJXA 3KASA 2XEIA 2EK9A 4OMEA 4JYWA 4X3RA 1WVMA 4LQGA 5D29A 1CX8A 4MCPA 4OC3A 4C8TA 4C8UA 3ICUA 2JBKA 3D7FA 3IWWA 4NGNA 4OC2A 3S9MA 3D7GA 1V6CA 4C86A 4C85A 4CDJA 4C8CA 3D7HA 3SJEA 4P4IA 4JZ0A 2C6GA 4P4EA 4C99A 4NGSA 1Y9ZA 3FEEA 2C6PA 4P4FA 3BXMA 2XEGA 2OR4A 2PVVA 2PVWA 3BI0A 3SJGA 5ELYA 3FEDA 4OC4A 4P44A 4C8PA 1Z8LA 3EIFA 4MCQA 4OC0A 2OOTA 3I6SA 4OC5A 3BI1A 3FECA 4NGRA 3IIBA 4C8AA 4NGTA 4OC1A 2EK8A 4TWEA 2XEFA 3RBUA 4C84A 3VTAA 2JBJA 3D7DA 4CDKA
chains in the Genus database with same CATH superfamily
2XEJA 2C6CA 4J0NA 4YN3A 3TLBA 1C30B 2AUNA 2GP4A 2R82A 4P4DA 4P45A 4TJVA 3S9LA 4P4JA 1XF1A 3SR3A 3BHXA 4W9YA 4M8DA 4C9EA 3SJFA 1DE4C 1R61A 5F1YA 4C9AA 4C9VA 3TLCA 2X0SA 3FF3A 5IR2A 3T05A 1ZL0A 3EZBA 2CIJA 4KNGE 4MCRA 2HWGA 4MCSA 5IB9A 2OLSA 1T36B 4C9UA 1BXRB 3S9NA 3I74A 4COBA 4P4BA 1GGOA 5F09A 4NGPA 4E5SA 4MI1A 4NGMA 2AUMA 4NGQA 1CS0B 3SJXA 4C8FA 4C9RA 2E28A 4TJXA 3EZAA 3KASA 2PCNA 2XEIA 4CZ1A 2EK9A 4OMEA 1VBHA 4JYWA 4X3RA 1WVMA 4LQGA 3TLGA 2B0AA 5D29A 4E94A 1CX8A 2EZBA 3TLYA 1KEEB 5K99A 4MCPA 3T0TA 1JDBC 4OC3A 4C8TA 5FD8A 4C8UA 2C5QA 3ICUA 2JBKA 2EZAA 3D7FA 3IWWA 3NOJA 4NGNA 4OC2A 3S9MA 3T5MA 5F5XA 3U1BA 5F9MA 5JVLA 3D7GA 1V6CA 4C86A 4MJXA 4JVOA 4C85A 4CDJA 2D0PA 2FM4A 3TLEA 4IIXA 4C8CA 4CO9A 1Q5XA 4EYSA 3GJZA 3D7HA 3SJEA 1CE8B 4INJA 4P4IA 4JZ0A 2C6GA 1M6VB 2MP0A 4P4EA 4C99A 4NGSA 1Y9ZA 3FEEA 2EZCA 4CDKA 2C6PA 1NXJA 4P4FA 1A9XB 1EZBA 3BXMA 2DIKA 2XEGA 1ZRSA 2OR4A 2PVVA 2PVWA 1C3OB 3BI0A 3SJGA 5JYBA 1KBLA 2YJTA 5ELYA 3FEDA 2D0OA 4OC4A 4P44A 4C8PA 1Z8LA 3TLGB 3EIFA 4MCQA 4OC0A 1KC7A 2OOTA 3C8OA 3G23A 3I6SA 1ZYMA 4OC5A 3TYXA 3BI1A 1DIKA 1EZAA 3FECA 3KRVA 3TLAA 4NGRA 3IIBA 4C8AA 3K9TA 2HI6A 3EZEA 4NGTA 3T07A 2YJVA 2HROA 4OC1A 1JDEA 1VBGA 2EK8A 4TWEA 2XEFA 4H1HA 3RBUA 4C84A 4COGA 3VTAA 1J3LA 2JBJA 3D7DA 3K4IA 1VI4A 3TLZA 4IIYA 1NBWA
chains in the Genus database with same CATH topology
2XEJA 2C6CA 4YN3A 4TJVA 2GP4A 4P4DA 4P45A 3S9LA 4P4JA 1XF1A 3BHXA 4W9YA 4C9EA 3SJFA 1DE4C 4C9VA 4C9AA 3FF3A 5IR2A 4KNGE 2CIJA 4MCRA 4MCSA 5IB9A 4C9UA 3S9NA 3I74A 4P4BA 5F09A 4NGPA 4NGMA 4NGQA 3SJXA 4C8FA 4C9RA 4TJXA 3KASA 2XEIA 2EK9A 4OMEA 4JYWA 4X3RA 1WVMA 4LQGA 5D29A 1CX8A 4MCPA 4OC3A 4C8TA 4C8UA 2C5QA 3ICUA 2JBKA 3D7FA 3IWWA 4NGNA 4OC2A 3S9MA 3D7GA 1V6CA 4C86A 4C85A 4CDJA 4C8CA 3D7HA 3SJEA 4P4IA 4JZ0A 2C6GA 4P4EA 4C99A 4NGSA 1Y9ZA 3FEEA 2C6PA 4P4FA 3BXMA 2XEGA 2OR4A 2PVVA 2PVWA 3BI0A 3SJGA 5ELYA 3FEDA 4OC4A 4P44A 4C8PA 1Z8LA 3EIFA 4MCQA 4OC0A 2OOTA 3I6SA 4OC5A 3BI1A 3FECA 4NGRA 3IIBA 4C8AA 3K9TA 4NGTA 4OC1A 2EK8A 4TWEA 2XEFA 3RBUA 4C84A 3VTAA 2JBJA 3D7DA 4CDKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XEJ A;  2C6C A;  4YN3 A;  4TJV A;  4P45 A;  4P4D A;  3S9L A;  4P4J A;  1XF1 A;  3BHX A;  4W9Y A;  4C9E A;  3SJF A;  1DE4 C;  4C9V A;  4C9A A;  3FF3 A;  4KNG E;  2CIJ A;  4MCR A;  4MCS A;  5IB9 A;  4C9U A;  3S9N A;  3I74 A;  4P4B A;  5F09 A;  4NGP A;  4NGM A;  4NGQ A;  3SJX A;  4C8F A;  4C9R A;  4TJX A;  3KAS A;  2XEI A;  2EK9 A;  4OME A;  4JYW A;  4X3R A;  1WVM A;  4LQG A;  5D29 A;  1CX8 A;  4MCP A;  4OC3 A;  4C8T A;  4C8U A;  3ICU A;  2JBK A;  3D7F A;  3IWW A;  4NGN A;  4OC2 A;  3S9M A;  3D7G A;  1V6C A;  4C86 A;  4C85 A;  4CDJ A;  4C8C A;  3D7H A;  3SJE A;  4P4I A;  4JZ0 A;  2C6G A;  4P4E A;  4C99 A;  4NGS A;  1Y9Z A;  3FEE A;  2C6P A;  4P4F A;  3BXM A;  2XEG A;  2OR4 A;  2PVV A;  2PVW A;  3BI0 A;  3SJG A;  5ELY A;  3FED A;  4OC4 A;  4P44 A;  4C8P A;  1Z8L A;  3EIF A;  4MCQ A;  4OC0 A;  2OOT A;  3I6S A;  4OC5 A;  3BI1 A;  3FEC A;  4NGR A;  3IIB A;  4C8A A;  4NGT A;  4OC1 A;  2EK8 A;  4TWE A;  2XEF A;  3RBU A;  4C84 A;  3VTA A;  2JBJ A;  3D7D A;  4CDK A; 
#chains in the Genus database with same CATH topology
 2XEJ A;  2C6C A;  4J0N A;  4YN3 A;  3TLB A;  1C30 B;  2AUN A;  2GP4 A;  2R82 A;  4P4D A;  4P45 A;  4TJV A;  3S9L A;  4P4J A;  1XF1 A;  3SR3 A;  3BHX A;  4W9Y A;  4M8D A;  4C9E A;  3SJF A;  1DE4 C;  1R61 A;  5F1Y A;  4C9A A;  4C9V A;  3TLC A;  2X0S A;  3FF3 A;  5IR2 A;  3T05 A;  1ZL0 A;  3EZB A;  2CIJ A;  4KNG E;  4MCR A;  2HWG A;  4MCS A;  5IB9 A;  2OLS A;  1T36 B;  4C9U A;  1BXR B;  3S9N A;  3I74 A;  4COB A;  4P4B A;  1GGO A;  5F09 A;  4NGP A;  4E5S A;  4MI1 A;  4NGM A;  2AUM A;  4NGQ A;  1CS0 B;  3SJX A;  4C8F A;  4C9R A;  2E28 A;  4TJX A;  3EZA A;  3KAS A;  2PCN A;  2XEI A;  4CZ1 A;  2EK9 A;  4OME A;  1VBH A;  4JYW A;  4X3R A;  1WVM A;  4LQG A;  3TLG A;  2B0A A;  5D29 A;  4E94 A;  1CX8 A;  2EZB A;  3TLY A;  1KEE B;  5K99 A;  4MCP A;  3T0T A;  1JDB C;  4OC3 A;  4C8T A;  5FD8 A;  4C8U A;  2C5Q A;  3ICU A;  2JBK A;  2EZA A;  3D7F A;  3IWW A;  3NOJ A;  4NGN A;  4OC2 A;  3S9M A;  3T5M A;  5F5X A;  3U1B A;  5F9M A;  5JVL A;  3D7G A;  1V6C A;  4C86 A;  4MJX A;  4JVO A;  4C85 A;  4CDJ A;  2D0P A;  2FM4 A;  3TLE A;  4IIX A;  4C8C A;  4CO9 A;  1Q5X A;  4EYS A;  3GJZ A;  3D7H A;  3SJE A;  1CE8 B;  4INJ A;  4P4I A;  4JZ0 A;  2C6G A;  1M6V B;  2MP0 A;  4P4E A;  4C99 A;  4NGS A;  1Y9Z A;  3FEE A;  2EZC A;  4CDK A;  2C6P A;  1NXJ A;  4P4F A;  1A9X B;  1EZB A;  3BXM A;  2DIK A;  2XEG A;  1ZRS A;  2OR4 A;  2PVV A;  2PVW A;  1C3O B;  3BI0 A;  3SJG A;  5JYB A;  1KBL A;  2YJT A;  5ELY A;  3FED A;  2D0O A;  4OC4 A;  4P44 A;  4C8P A;  1Z8L A;  3TLG B;  3EIF A;  4MCQ A;  4OC0 A;  1KC7 A;  2OOT A;  3C8O A;  3G23 A;  3I6S A;  1ZYM A;  4OC5 A;  3TYX A;  3BI1 A;  1DIK A;  1EZA A;  3FEC A;  3KRV A;  3TLA A;  4NGR A;  3IIB A;  4C8A A;  3K9T A;  2HI6 A;  3EZE A;  4NGT A;  3T07 A;  2YJV A;  2HRO A;  4OC1 A;  1JDE A;  1VBG A;  2EK8 A;  4TWE A;  2XEF A;  4H1H A;  3RBU A;  4C84 A;  4COG A;  3VTA A;  1J3L A;  2JBJ A;  3D7D A;  3K4I A;  1VI4 A;  3TLZ A;  4IIY A;  1NBW A; 
#chains in the Genus database with same CATH homology
 2XEJ A;  2C6C A;  4YN3 A;  4TJV A;  2GP4 A;  4P4D A;  4P45 A;  3S9L A;  4P4J A;  1XF1 A;  3BHX A;  4W9Y A;  4C9E A;  3SJF A;  1DE4 C;  4C9V A;  4C9A A;  3FF3 A;  5IR2 A;  4KNG E;  2CIJ A;  4MCR A;  4MCS A;  5IB9 A;  4C9U A;  3S9N A;  3I74 A;  4P4B A;  5F09 A;  4NGP A;  4NGM A;  4NGQ A;  3SJX A;  4C8F A;  4C9R A;  4TJX A;  3KAS A;  2XEI A;  2EK9 A;  4OME A;  4JYW A;  4X3R A;  1WVM A;  4LQG A;  5D29 A;  1CX8 A;  4MCP A;  4OC3 A;  4C8T A;  4C8U A;  2C5Q A;  3ICU A;  2JBK A;  3D7F A;  3IWW A;  4NGN A;  4OC2 A;  3S9M A;  3D7G A;  1V6C A;  4C86 A;  4C85 A;  4CDJ A;  4C8C A;  3D7H A;  3SJE A;  4P4I A;  4JZ0 A;  2C6G A;  4P4E A;  4C99 A;  4NGS A;  1Y9Z A;  3FEE A;  2C6P A;  4P4F A;  3BXM A;  2XEG A;  2OR4 A;  2PVV A;  2PVW A;  3BI0 A;  3SJG A;  5ELY A;  3FED A;  4OC4 A;  4P44 A;  4C8P A;  1Z8L A;  3EIF A;  4MCQ A;  4OC0 A;  2OOT A;  3I6S A;  4OC5 A;  3BI1 A;  3FEC A;  4NGR A;  3IIB A;  4C8A A;  3K9T A;  4NGT A;  4OC1 A;  2EK8 A;  4TWE A;  2XEF A;  3RBU A;  4C84 A;  3VTA A;  2JBJ A;  3D7D A;  4CDK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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